Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AC091812.1-201ENST00000432235 1948 ntBASIC1.92□□□□□ -2.1
COL4A4P53420 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC1.92□□□□□ -2.1
COL4A4P53420 AC010615.1-201ENST00000594254 1764 ntBASIC1.92□□□□□ -2.1
COL4A4P53420 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC1.92□□□□□ -2.1
COL4A4P53420 RNU6-1252P-201ENST00000363054 104 ntBASIC1.92□□□□□ -2.1
COL4A4P53420 Y_RNA.212-201ENST00000364177 102 ntBASIC1.92□□□□□ -2.1
COL4A4P53420 Y_RNA.455-201ENST00000384230 98 ntBASIC1.92□□□□□ -2.1
COL4A4P53420 RNU6-1156P-201ENST00000410365 100 ntBASIC1.92□□□□□ -2.1
COL4A4P53420 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC1.92□□□□□ -2.1
COL4A4P53420 AL139396.1-201ENST00000421137 167 ntBASIC1.92□□□□□ -2.1
COL4A4P53420 AL669831.1-202ENST00000428504 417 ntBASIC1.92□□□□□ -2.1
COL4A4P53420 AC005094.1-201ENST00000440420 368 ntBASIC1.92□□□□□ -2.1
COL4A4P53420 MTND1P17-201ENST00000448961 204 ntBASIC1.92□□□□□ -2.1
COL4A4P53420 CECR9-201ENST00000453421 199 ntBASIC1.92□□□□□ -2.1
COL4A4P53420 AC092451.1-201ENST00000480211 153 ntBASIC1.92□□□□□ -2.1
COL4A4P53420 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC1.92□□□□□ -2.1
COL4A4P53420 RNU1-40P-201ENST00000516816 164 ntBASIC1.92□□□□□ -2.1
COL4A4P53420 RNU1-97P-201ENST00000516872 164 ntBASIC1.92□□□□□ -2.1
COL4A4P53420 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC1.92□□□□□ -2.1
COL4A4P53420 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC1.92□□□□□ -2.1
COL4A4P53420 AC113195.1-201ENST00000579952 141 ntBASIC1.92□□□□□ -2.1
COL4A4P53420 AC174048.1-201ENST00000603389 144 ntBASIC1.92□□□□□ -2.1
COL4A4P53420 MIR8081-201ENST00000611533 95 ntBASIC1.92□□□□□ -2.1
COL4A4P53420 AL390240.1-201ENST00000612950 384 ntBASIC1.92□□□□□ -2.1
COL4A4P53420 FAM157A-202ENST00000615155 405 ntBASIC1.92□□□□□ -2.1
COL4A4P53420 ZNF519P1-201ENST00000449011 1626 ntBASIC1.92□□□□□ -2.1
COL4A4P53420 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC1.92□□□□□ -2.1
COL4A4P53420 AP001486.2-201ENST00000561652 5113 ntBASIC1.92□□□□□ -2.1
COL4A4P53420 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
COL4A4P53420 RNU6-490P-201ENST00000362985 107 ntBASIC1.91□□□□□ -2.1
COL4A4P53420 Y_RNA.149-201ENST00000363558 117 ntBASIC1.91□□□□□ -2.1
COL4A4P53420 RNU5A-8P-201ENST00000364102 114 ntBASIC1.91□□□□□ -2.1
COL4A4P53420 SNORD115-7-201ENST00000365306 82 ntBASIC1.91□□□□□ -2.1
COL4A4P53420 U3.15-201ENST00000365398 212 ntBASIC1.91□□□□□ -2.1
COL4A4P53420 Y_RNA.354-201ENST00000365448 111 ntBASIC1.91□□□□□ -2.1
COL4A4P53420 RNA5SP167-201ENST00000365461 116 ntBASIC1.91□□□□□ -2.1
COL4A4P53420 SNORA75B-201ENST00000384053 137 ntBASIC1.91□□□□□ -2.1
COL4A4P53420 RNU6-1127P-201ENST00000384580 107 ntBASIC1.91□□□□□ -2.1
COL4A4P53420 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC1.91□□□□□ -2.1
COL4A4P53420 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
COL4A4P53420 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.91□□□□□ -2.1
COL4A4P53420 RPL30P3-201ENST00000424262 333 ntBASIC1.91□□□□□ -2.1
COL4A4P53420 RPL7P37-201ENST00000425095 738 ntBASIC1.91□□□□□ -2.1
COL4A4P53420 OSTCP8-201ENST00000445117 448 ntBASIC1.91□□□□□ -2.1
COL4A4P53420 AL162395.1-201ENST00000457882 422 ntBASIC1.91□□□□□ -2.1
COL4A4P53420 AC005912.1-201ENST00000495392 255 ntBASIC1.91□□□□□ -2.1
COL4A4P53420 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC1.91□□□□□ -2.1
COL4A4P53420 RNU4ATAC10P-201ENST00000516967 122 ntBASIC1.91□□□□□ -2.1
COL4A4P53420 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC1.91□□□□□ -2.1
COL4A4P53420 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC1.91□□□□□ -2.1
COL4A4P53420 AC023157.2-201ENST00000540596 141 ntBASIC1.91□□□□□ -2.1
COL4A4P53420 AP000763.2-201ENST00000540641 163 ntBASIC1.91□□□□□ -2.1
COL4A4P53420 MDM2-233ENST00000545204 398 ntTSL 5 BASIC1.91□□□□□ -2.1
COL4A4P53420 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC1.91□□□□□ -2.1
COL4A4P53420 AC005899.2-201ENST00000584353 90 ntBASIC1.91□□□□□ -2.1
COL4A4P53420 AC092747.3-201ENST00000603769 301 ntBASIC1.91□□□□□ -2.1
COL4A4P53420 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC1.91□□□□□ -2.1
COL4A4P53420 MIR6128-201ENST00000615528 109 ntBASIC1.91□□□□□ -2.1
COL4A4P53420 AL136313.1-201ENST00000624804 202 ntBASIC1.91□□□□□ -2.1
COL4A4P53420 MPP6-209ENST00000625307 126 ntTSL 5 BASIC1.91□□□□□ -2.1
COL4A4P53420 KPNA2P1-201ENST00000458289 1591 ntBASIC1.91□□□□□ -2.1
COL4A4P53420 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC1.91□□□□□ -2.1
COL4A4P53420 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC1.9□□□□□ -2.1
COL4A4P53420 AC011978.2-201ENST00000569835 2054 ntBASIC1.9□□□□□ -2.1
COL4A4P53420 Y_RNA.424-201ENST00000384063 103 ntBASIC1.9□□□□□ -2.1
COL4A4P53420 Y_RNA.428-201ENST00000384078 102 ntBASIC1.9□□□□□ -2.1
COL4A4P53420 RNU6-432P-201ENST00000384196 109 ntBASIC1.9□□□□□ -2.1
COL4A4P53420 SNORA24.1-201ENST00000384401 135 ntBASIC1.9□□□□□ -2.1
COL4A4P53420 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC1.9□□□□□ -2.1
COL4A4P53420 AL603908.1-201ENST00000406098 201 ntBASIC1.9□□□□□ -2.1
COL4A4P53420 RN7SKP158-201ENST00000410453 326 ntBASIC1.9□□□□□ -2.1
COL4A4P53420 RNU2-15P-201ENST00000410692 191 ntBASIC1.9□□□□□ -2.1
COL4A4P53420 RAC1P6-201ENST00000423911 575 ntBASIC1.9□□□□□ -2.1
COL4A4P53420 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC1.9□□□□□ -2.1
COL4A4P53420 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC1.9□□□□□ -2.1
COL4A4P53420 snoU13.7-201ENST00000459220 104 ntBASIC1.9□□□□□ -2.1
COL4A4P53420 SNORD108-201ENST00000459332 71 ntBASIC1.9□□□□□ -2.1
COL4A4P53420 MTATP8P1-201ENST00000467115 207 ntBASIC1.9□□□□□ -2.1
COL4A4P53420 OARD1-209ENST00000471367 401 ntTSL 2 BASIC1.9□□□□□ -2.1
COL4A4P53420 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC1.9□□□□□ -2.1
COL4A4P53420 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC1.9□□□□□ -2.1
COL4A4P53420 AC008526.1-201ENST00000509149 338 ntBASIC1.9□□□□□ -2.1
COL4A4P53420 SNORA14.1-201ENST00000516113 141 ntBASIC1.9□□□□□ -2.1
COL4A4P53420 RNU6-189P-201ENST00000516120 101 ntBASIC1.9□□□□□ -2.1
COL4A4P53420 RNA5SP220-201ENST00000516298 104 ntBASIC1.9□□□□□ -2.1
COL4A4P53420 Y_RNA.721-201ENST00000517207 102 ntBASIC1.9□□□□□ -2.1
COL4A4P53420 AC109635.4-202ENST00000531666 412 ntBASIC1.9□□□□□ -2.1
COL4A4P53420 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.9□□□□□ -2.1
COL4A4P53420 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC1.9□□□□□ -2.1
COL4A4P53420 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC1.9□□□□□ -2.1
COL4A4P53420 MIR4293-201ENST00000584305 78 ntBASIC1.9□□□□□ -2.1
COL4A4P53420 AC008521.1-201ENST00000587471 187 ntBASIC1.9□□□□□ -2.1
COL4A4P53420 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC1.9□□□□□ -2.1
COL4A4P53420 AC018462.2-201ENST00000605375 395 ntBASIC1.9□□□□□ -2.1
COL4A4P53420 RPL23AP88-201ENST00000605759 454 ntBASIC1.9□□□□□ -2.1
COL4A4P53420 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC1.9□□□□□ -2.1
COL4A4P53420 SNORD58B-201ENST00000607313 66 ntBASIC1.9□□□□□ -2.1
COL4A4P53420 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC1.9□□□□□ -2.1
COL4A4P53420 AL138726.1-201ENST00000614873 333 ntBASIC1.9□□□□□ -2.1
COL4A4P53420 U2.1-201ENST00000618978 145 ntBASIC1.9□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 113.7 ms