Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AL132822.1-201ENST00000617063 513 ntBASIC1.67□□□□□ -2.14
MSH6P52701 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC1.67□□□□□ -2.14
MSH6P52701 AC009161.2-201ENST00000624626 138 ntBASIC1.67□□□□□ -2.14
MSH6P52701 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC1.66□□□□□ -2.14
MSH6P52701 SNORA40.19-201ENST00000390846 128 ntBASIC1.66□□□□□ -2.14
MSH6P52701 AC133104.1-201ENST00000429100 218 ntBASIC1.66□□□□□ -2.14
MSH6P52701 AL591043.1-201ENST00000432461 424 ntBASIC1.66□□□□□ -2.14
MSH6P52701 TRBV25OR9-2-201ENST00000438417 374 ntBASIC1.66□□□□□ -2.14
MSH6P52701 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC1.66□□□□□ -2.14
MSH6P52701 AC132479.1-201ENST00000449160 144 ntBASIC1.66□□□□□ -2.14
MSH6P52701 AC022364.2-201ENST00000457963 554 ntBASIC1.66□□□□□ -2.14
MSH6P52701 RNU6-667P-201ENST00000517186 102 ntBASIC1.66□□□□□ -2.14
MSH6P52701 RN7SKP256-201ENST00000517201 314 ntBASIC1.66□□□□□ -2.14
MSH6P52701 CYCSP27-201ENST00000527643 293 ntBASIC1.66□□□□□ -2.14
MSH6P52701 MIR4295-201ENST00000585286 85 ntBASIC1.66□□□□□ -2.14
MSH6P52701 AL590229.1-201ENST00000603497 542 ntBASIC1.66□□□□□ -2.14
MSH6P52701 AC099842.1-201ENST00000619919 596 ntBASIC1.66□□□□□ -2.14
MSH6P52701 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC1.66□□□□□ -2.14
MSH6P52701 RNU6-212P-201ENST00000362642 104 ntBASIC1.65□□□□□ -2.15
MSH6P52701 U3.13-201ENST00000364804 214 ntBASIC1.65□□□□□ -2.15
MSH6P52701 RNU1-133P-201ENST00000364867 167 ntBASIC1.65□□□□□ -2.15
MSH6P52701 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC1.65□□□□□ -2.15
MSH6P52701 RNU6-546P-201ENST00000383991 107 ntBASIC1.65□□□□□ -2.15
MSH6P52701 RNU6-611P-201ENST00000384276 104 ntBASIC1.65□□□□□ -2.15
MSH6P52701 RNU6-456P-201ENST00000384493 107 ntBASIC1.65□□□□□ -2.15
MSH6P52701 MIR518A2-201ENST00000384966 87 ntBASIC1.65□□□□□ -2.15
MSH6P52701 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC1.65□□□□□ -2.15
MSH6P52701 AC096920.1-201ENST00000423991 241 ntBASIC1.65□□□□□ -2.15
MSH6P52701 RPL39P29-201ENST00000447779 157 ntBASIC1.65□□□□□ -2.15
MSH6P52701 MTCO2P6-201ENST00000463134 685 ntBASIC1.65□□□□□ -2.15
MSH6P52701 BET1P1-201ENST00000482276 359 ntBASIC1.65□□□□□ -2.15
MSH6P52701 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC1.65□□□□□ -2.15
MSH6P52701 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.65□□□□□ -2.15
MSH6P52701 AC096745.1-201ENST00000509945 370 ntBASIC1.65□□□□□ -2.15
MSH6P52701 MTCO3P7-201ENST00000510008 774 ntBASIC1.65□□□□□ -2.15
MSH6P52701 RNA5SP503-201ENST00000517047 117 ntBASIC1.65□□□□□ -2.15
MSH6P52701 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC1.65□□□□□ -2.15
MSH6P52701 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC1.65□□□□□ -2.15
MSH6P52701 AC018630.3-201ENST00000542637 96 ntBASIC1.65□□□□□ -2.15
MSH6P52701 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC1.65□□□□□ -2.15
MSH6P52701 MIR3913-1-201ENST00000577744 102 ntBASIC1.65□□□□□ -2.15
MSH6P52701 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC1.65□□□□□ -2.15
MSH6P52701 AC072046.2-201ENST00000618366 268 ntBASIC1.65□□□□□ -2.15
MSH6P52701 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC1.65□□□□□ -2.15
MSH6P52701 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC1.65□□□□□ -2.15
MSH6P52701 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC1.64□□□□□ -2.15
MSH6P52701 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.64□□□□□ -2.15
MSH6P52701 RNU6-527P-201ENST00000363425 104 ntBASIC1.64□□□□□ -2.15
MSH6P52701 RNU6-944P-201ENST00000364023 107 ntBASIC1.64□□□□□ -2.15
MSH6P52701 Y_RNA.201-201ENST00000364052 96 ntBASIC1.64□□□□□ -2.15
MSH6P52701 RNU6-25P-201ENST00000383873 107 ntBASIC1.64□□□□□ -2.15
MSH6P52701 RNU6-48P-201ENST00000384161 107 ntBASIC1.64□□□□□ -2.15
MSH6P52701 RNU6-16P-201ENST00000384385 107 ntBASIC1.64□□□□□ -2.15
MSH6P52701 RNU6-15P-201ENST00000384534 107 ntBASIC1.64□□□□□ -2.15
MSH6P52701 RNU6-29P-201ENST00000384637 107 ntBASIC1.64□□□□□ -2.15
MSH6P52701 RNU6-606P-201ENST00000384721 111 ntBASIC1.64□□□□□ -2.15
MSH6P52701 RNU4-46P-201ENST00000410818 138 ntBASIC1.64□□□□□ -2.15
MSH6P52701 RPS29P15-201ENST00000458329 171 ntBASIC1.64□□□□□ -2.15
MSH6P52701 GMFBP1-201ENST00000467831 427 ntBASIC1.64□□□□□ -2.15
MSH6P52701 AC006512.1-201ENST00000468816 291 ntBASIC1.64□□□□□ -2.15
MSH6P52701 HMGB1P35-201ENST00000503360 598 ntBASIC1.64□□□□□ -2.15
MSH6P52701 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC1.64□□□□□ -2.15
MSH6P52701 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC1.64□□□□□ -2.15
MSH6P52701 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC1.64□□□□□ -2.15
MSH6P52701 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC1.64□□□□□ -2.15
MSH6P52701 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC1.64□□□□□ -2.15
MSH6P52701 AP003392.2-201ENST00000527269 208 ntBASIC1.64□□□□□ -2.15
MSH6P52701 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC1.64□□□□□ -2.15
MSH6P52701 AC022616.8-201ENST00000533569 253 ntBASIC1.64□□□□□ -2.15
MSH6P52701 AP000763.2-201ENST00000540641 163 ntBASIC1.64□□□□□ -2.15
MSH6P52701 MIR4703-201ENST00000577728 79 ntBASIC1.64□□□□□ -2.15
MSH6P52701 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC1.64□□□□□ -2.15
MSH6P52701 AC121247.2-201ENST00000604776 136 ntBASIC1.64□□□□□ -2.15
MSH6P52701 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC1.64□□□□□ -2.15
MSH6P52701 MIR7974-201ENST00000615835 79 ntBASIC1.64□□□□□ -2.15
MSH6P52701 AC090517.3-201ENST00000625170 141 ntBASIC1.64□□□□□ -2.15
MSH6P52701 ZNF702P-202ENST00000434269 1966 ntBASIC1.64□□□□□ -2.15
MSH6P52701 ICE2P2-201ENST00000483823 2787 ntBASIC1.64□□□□□ -2.15
MSH6P52701 RNU6-393P-201ENST00000384475 107 ntBASIC1.63□□□□□ -2.15
MSH6P52701 RNU6-1222P-201ENST00000384615 107 ntBASIC1.63□□□□□ -2.15
MSH6P52701 MIR544A-201ENST00000384855 91 ntBASIC1.63□□□□□ -2.15
MSH6P52701 MIR216A-201ENST00000385063 110 ntBASIC1.63□□□□□ -2.15
MSH6P52701 AL356432.1-201ENST00000405809 419 ntBASIC1.63□□□□□ -2.15
MSH6P52701 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC1.63□□□□□ -2.15
MSH6P52701 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC1.63□□□□□ -2.15
MSH6P52701 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC1.63□□□□□ -2.15
MSH6P52701 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC1.63□□□□□ -2.15
MSH6P52701 AL122001.1-201ENST00000457027 370 ntBASIC1.63□□□□□ -2.15
MSH6P52701 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC1.63□□□□□ -2.15
MSH6P52701 MIR4299-201ENST00000577899 72 ntBASIC1.63□□□□□ -2.15
MSH6P52701 AC040904.1-201ENST00000590850 223 ntBASIC1.63□□□□□ -2.15
MSH6P52701 AC078795.2-201ENST00000602835 1252 ntBASIC1.63□□□□□ -2.15
MSH6P52701 Z82243.1-201ENST00000609432 473 ntBASIC1.63□□□□□ -2.15
MSH6P52701 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC1.63□□□□□ -2.15
MSH6P52701 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
MSH6P52701 AL390237.1-201ENST00000404226 1415 ntBASIC1.63□□□□□ -2.15
MSH6P52701 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC1.62□□□□□ -2.15
MSH6P52701 snoU2_19.1-201ENST00000362361 80 ntBASIC1.62□□□□□ -2.15
MSH6P52701 RNU6-1285P-201ENST00000363480 105 ntBASIC1.62□□□□□ -2.15
MSH6P52701 RNU6-105P-201ENST00000363909 104 ntBASIC1.62□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms