Protein–RNA interactions for Protein: P43246

MSH2, DNA mismatch repair protein Msh2, humanhuman

Predictions only

Length 934 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2P43246 SNORD114-30-201ENST00000364448 72 ntBASIC2.43□□□□□ -2.02
MSH2P43246 Y_RNA.510-201ENST00000384511 114 ntBASIC2.43□□□□□ -2.02
MSH2P43246 AL139396.1-201ENST00000421137 167 ntBASIC2.43□□□□□ -2.02
MSH2P43246 WARS2P1-201ENST00000429678 537 ntBASIC2.43□□□□□ -2.02
MSH2P43246 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC2.43□□□□□ -2.02
MSH2P43246 AC244670.1-201ENST00000436879 112 ntBASIC2.43□□□□□ -2.02
MSH2P43246 PCMTD1P1-201ENST00000455560 355 ntBASIC2.43□□□□□ -2.02
MSH2P43246 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC2.43□□□□□ -2.02
MSH2P43246 HMGN1P12-201ENST00000499125 195 ntBASIC2.43□□□□□ -2.02
MSH2P43246 RN7SKP24-201ENST00000515888 284 ntBASIC2.43□□□□□ -2.02
MSH2P43246 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC2.43□□□□□ -2.02
MSH2P43246 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC2.43□□□□□ -2.02
MSH2P43246 MIR4790-201ENST00000577799 79 ntBASIC2.43□□□□□ -2.02
MSH2P43246 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC2.43□□□□□ -2.02
MSH2P43246 MIR6895-201ENST00000613497 78 ntBASIC2.43□□□□□ -2.02
MSH2P43246 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC2.43□□□□□ -2.02
MSH2P43246 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
MSH2P43246 AC069528.2-201ENST00000624849 1991 ntBASIC2.42□□□□□ -2.02
MSH2P43246 SNORA72.1-201ENST00000363485 129 ntBASIC2.42□□□□□ -2.02
MSH2P43246 SNORA25B-201ENST00000365507 128 ntBASIC2.42□□□□□ -2.02
MSH2P43246 MIR521-1-201ENST00000384902 87 ntBASIC2.42□□□□□ -2.02
MSH2P43246 MIR517A-201ENST00000385001 87 ntBASIC2.42□□□□□ -2.02
MSH2P43246 MIR548K-201ENST00000408406 116 ntBASIC2.42□□□□□ -2.02
MSH2P43246 EDDM3CP-201ENST00000415977 425 ntBASIC2.42□□□□□ -2.02
MSH2P43246 AL109933.2-201ENST00000452651 260 ntBASIC2.42□□□□□ -2.02
MSH2P43246 AL353752.1-201ENST00000454946 260 ntBASIC2.42□□□□□ -2.02
MSH2P43246 MTND5P5-201ENST00000503764 376 ntBASIC2.42□□□□□ -2.02
MSH2P43246 AC016632.1-201ENST00000503994 196 ntBASIC2.42□□□□□ -2.02
MSH2P43246 AC022447.4-201ENST00000504053 364 ntBASIC2.42□□□□□ -2.02
MSH2P43246 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC2.42□□□□□ -2.02
MSH2P43246 IMMP1LP2-201ENST00000552954 492 ntBASIC2.42□□□□□ -2.02
MSH2P43246 MIR548S-201ENST00000581352 82 ntBASIC2.42□□□□□ -2.02
MSH2P43246 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC2.42□□□□□ -2.02
MSH2P43246 AC078795.3-201ENST00000602913 472 ntBASIC2.42□□□□□ -2.02
MSH2P43246 AC006023.1-201ENST00000603944 259 ntBASIC2.42□□□□□ -2.02
MSH2P43246 AC018889.1-201ENST00000605372 397 ntBASIC2.42□□□□□ -2.02
MSH2P43246 MIR3976-201ENST00000606807 139 ntBASIC2.42□□□□□ -2.02
MSH2P43246 AC067747.1-201ENST00000608026 250 ntBASIC2.42□□□□□ -2.02
MSH2P43246 AC019193.3-201ENST00000609144 554 ntBASIC2.42□□□□□ -2.02
MSH2P43246 MIR8076-201ENST00000611401 83 ntBASIC2.42□□□□□ -2.02
MSH2P43246 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC2.42□□□□□ -2.02
MSH2P43246 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC2.41□□□□□ -2.02
MSH2P43246 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
MSH2P43246 AC092268.1-201ENST00000342691 405 ntBASIC2.41□□□□□ -2.02
MSH2P43246 Y_RNA.184-201ENST00000363884 108 ntBASIC2.41□□□□□ -2.02
MSH2P43246 SNORD81.2-201ENST00000365153 76 ntBASIC2.41□□□□□ -2.02
MSH2P43246 RNU6-790P-201ENST00000384479 105 ntBASIC2.41□□□□□ -2.02
MSH2P43246 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC2.41□□□□□ -2.02
MSH2P43246 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC2.41□□□□□ -2.02
MSH2P43246 AC108938.1-201ENST00000451204 136 ntBASIC2.41□□□□□ -2.02
MSH2P43246 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC2.41□□□□□ -2.02
MSH2P43246 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC2.41□□□□□ -2.02
MSH2P43246 HMGB1P35-201ENST00000503360 598 ntBASIC2.41□□□□□ -2.02
MSH2P43246 RNU4ATAC17P-201ENST00000517272 120 ntBASIC2.41□□□□□ -2.02
MSH2P43246 IGLV3-17-201ENST00000519099 244 ntBASIC2.41□□□□□ -2.02
MSH2P43246 AL121579.1-201ENST00000555129 305 ntBASIC2.41□□□□□ -2.02
MSH2P43246 AC005668.1-201ENST00000571142 476 ntBASIC2.41□□□□□ -2.02
MSH2P43246 AC005730.3-201ENST00000583067 366 ntBASIC2.41□□□□□ -2.02
MSH2P43246 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC2.41□□□□□ -2.02
MSH2P43246 AC124303.1-201ENST00000605703 360 ntBASIC2.41□□□□□ -2.02
MSH2P43246 uc_338.5-201ENST00000611839 155 ntBASIC2.41□□□□□ -2.02
MSH2P43246 AL355073.2-201ENST00000612106 557 ntBASIC2.41□□□□□ -2.02
MSH2P43246 AC022202.1-201ENST00000613515 211 ntBASIC2.41□□□□□ -2.02
MSH2P43246 SNORA43.4-201ENST00000629559 138 ntBASIC2.41□□□□□ -2.02
MSH2P43246 SNORD98-201ENST00000636377 67 ntBASIC2.41□□□□□ -2.02
MSH2P43246 AL136360.1-201ENST00000503377 1900 ntBASIC2.4□□□□□ -2.02
MSH2P43246 MIRLET7G-201ENST00000362280 84 ntBASIC2.4□□□□□ -2.03
MSH2P43246 RNY3P14-201ENST00000384309 102 ntBASIC2.4□□□□□ -2.03
MSH2P43246 Y_RNA.504-201ENST00000384481 104 ntBASIC2.4□□□□□ -2.03
MSH2P43246 SNORA26.3-201ENST00000391119 136 ntBASIC2.4□□□□□ -2.03
MSH2P43246 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC2.4□□□□□ -2.03
MSH2P43246 AL590135.1-201ENST00000422215 156 ntBASIC2.4□□□□□ -2.03
MSH2P43246 AC019205.3-201ENST00000424573 156 ntBASIC2.4□□□□□ -2.03
MSH2P43246 HMGB1P18-201ENST00000438801 619 ntBASIC2.4□□□□□ -2.03
MSH2P43246 KRTAP19-11P-201ENST00000439851 104 ntBASIC2.4□□□□□ -2.03
MSH2P43246 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC2.4□□□□□ -2.03
MSH2P43246 DAP3P1-201ENST00000441522 278 ntBASIC2.4□□□□□ -2.03
MSH2P43246 AC016700.2-201ENST00000446011 156 ntBASIC2.4□□□□□ -2.03
MSH2P43246 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
MSH2P43246 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC2.4□□□□□ -2.03
MSH2P43246 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC2.4□□□□□ -2.03
MSH2P43246 AC104564.1-201ENST00000493028 407 ntBASIC2.4□□□□□ -2.03
MSH2P43246 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC2.4□□□□□ -2.03
MSH2P43246 AC015911.1-201ENST00000495111 156 ntBASIC2.4□□□□□ -2.03
MSH2P43246 AC103851.1-201ENST00000506833 274 ntBASIC2.4□□□□□ -2.03
MSH2P43246 RNA5SP320-201ENST00000516263 124 ntBASIC2.4□□□□□ -2.03
MSH2P43246 SNORA31.16-201ENST00000516773 139 ntBASIC2.4□□□□□ -2.03
MSH2P43246 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC2.4□□□□□ -2.03
MSH2P43246 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC2.4□□□□□ -2.03
MSH2P43246 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC2.4□□□□□ -2.03
MSH2P43246 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC2.4□□□□□ -2.03
MSH2P43246 AC007375.1-201ENST00000554513 578 ntBASIC2.4□□□□□ -2.03
MSH2P43246 MIR3136-201ENST00000583498 78 ntBASIC2.4□□□□□ -2.03
MSH2P43246 AL034555.1-201ENST00000604816 211 ntBASIC2.4□□□□□ -2.03
MSH2P43246 AL450472.1-202ENST00000637286 180 ntBASIC2.4□□□□□ -2.03
MSH2P43246 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.4□□□□□ -2.03
MSH2P43246 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.39□□□□□ -2.03
MSH2P43246 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC2.39□□□□□ -2.03
MSH2P43246 snoU2_19.1-201ENST00000362361 80 ntBASIC2.39□□□□□ -2.03
MSH2P43246 Y_RNA.123-201ENST00000363338 102 ntBASIC2.39□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 132.5 ms