Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC2.6□□□□□ -1.99
HOXC9P31274 MTND5P20-201ENST00000448677 143 ntBASIC2.6□□□□□ -1.99
HOXC9P31274 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.6□□□□□ -1.99
HOXC9P31274 SNORA31.18-201ENST00000517043 134 ntBASIC2.6□□□□□ -1.99
HOXC9P31274 RN7SKP40-201ENST00000517211 242 ntBASIC2.6□□□□□ -1.99
HOXC9P31274 RNA5SP454-201ENST00000517231 127 ntBASIC2.6□□□□□ -1.99
HOXC9P31274 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC2.6□□□□□ -1.99
HOXC9P31274 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.6□□□□□ -1.99
HOXC9P31274 AC090897.2-201ENST00000581715 130 ntBASIC2.6□□□□□ -1.99
HOXC9P31274 MIR3199-1-201ENST00000582434 88 ntBASIC2.6□□□□□ -1.99
HOXC9P31274 UBE2V2P2-201ENST00000587677 504 ntBASIC2.6□□□□□ -1.99
HOXC9P31274 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.6□□□□□ -1.99
HOXC9P31274 uc_338.5-201ENST00000611839 155 ntBASIC2.6□□□□□ -1.99
HOXC9P31274 AL355073.2-201ENST00000612106 557 ntBASIC2.6□□□□□ -1.99
HOXC9P31274 AC092794.2-201ENST00000620933 563 ntBASIC2.6□□□□□ -1.99
HOXC9P31274 MTND4P23-201ENST00000447723 1363 ntBASIC2.6□□□□□ -1.99
HOXC9P31274 MTND4P12-201ENST00000498999 1377 ntBASIC2.6□□□□□ -1.99
HOXC9P31274 HAUS6P2-201ENST00000433254 2404 ntBASIC2.59□□□□□ -1.99
HOXC9P31274 RNU6-212P-201ENST00000362642 104 ntBASIC2.59□□□□□ -1.99
HOXC9P31274 Y_RNA.151-201ENST00000363566 112 ntBASIC2.59□□□□□ -1.99
HOXC9P31274 SNORA68.1-201ENST00000364537 132 ntBASIC2.59□□□□□ -1.99
HOXC9P31274 U3.13-201ENST00000364804 214 ntBASIC2.59□□□□□ -1.99
HOXC9P31274 RNU1-109P-201ENST00000383960 147 ntBASIC2.59□□□□□ -1.99
HOXC9P31274 RNU6-622P-201ENST00000384272 103 ntBASIC2.59□□□□□ -1.99
HOXC9P31274 RNU6-933P-201ENST00000384424 107 ntBASIC2.59□□□□□ -1.99
HOXC9P31274 RNU6-790P-201ENST00000384479 105 ntBASIC2.59□□□□□ -1.99
HOXC9P31274 SNORA17.3-201ENST00000391159 129 ntBASIC2.59□□□□□ -1.99
HOXC9P31274 SNORA26.7-201ENST00000391288 122 ntBASIC2.59□□□□□ -1.99
HOXC9P31274 MIR548F5-201ENST00000408421 86 ntBASIC2.59□□□□□ -1.99
HOXC9P31274 AL030996.1-201ENST00000411430 235 ntBASIC2.59□□□□□ -1.99
HOXC9P31274 AL139396.1-201ENST00000421137 167 ntBASIC2.59□□□□□ -1.99
HOXC9P31274 MTND3P9-201ENST00000429526 346 ntBASIC2.59□□□□□ -1.99
HOXC9P31274 AC243964.1-201ENST00000441814 261 ntBASIC2.59□□□□□ -1.99
HOXC9P31274 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC2.59□□□□□ -1.99
HOXC9P31274 MTND1P11-201ENST00000456661 876 ntBASIC2.59□□□□□ -1.99
HOXC9P31274 RPL9P9-202ENST00000466501 579 ntBASIC2.59□□□□□ -1.99
HOXC9P31274 RPL23AP63-201ENST00000498752 471 ntBASIC2.59□□□□□ -1.99
HOXC9P31274 AC091951.2-201ENST00000500762 203 ntBASIC2.59□□□□□ -1.99
HOXC9P31274 RPPH1-2P-201ENST00000516688 293 ntBASIC2.59□□□□□ -1.99
HOXC9P31274 Y_RNA.702-201ENST00000516843 96 ntBASIC2.59□□□□□ -1.99
HOXC9P31274 COX6CP5-201ENST00000527162 228 ntBASIC2.59□□□□□ -1.99
HOXC9P31274 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC2.59□□□□□ -1.99
HOXC9P31274 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC2.59□□□□□ -1.99
HOXC9P31274 AC243960.4-201ENST00000600532 288 ntBASIC2.59□□□□□ -1.99
HOXC9P31274 AC096772.1-201ENST00000609146 564 ntBASIC2.59□□□□□ -1.99
HOXC9P31274 Y_RNA.804-201ENST00000615262 101 ntBASIC2.59□□□□□ -1.99
HOXC9P31274 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC2.59□□□□□ -1.99
HOXC9P31274 Z75746.1-201ENST00000440243 2080 ntBASIC2.59□□□□□ -2
HOXC9P31274 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.58□□□□□ -2
HOXC9P31274 ZNF720P1-201ENST00000562403 1939 ntBASIC2.58□□□□□ -2
HOXC9P31274 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.58□□□□□ -2
HOXC9P31274 SNORD114-19-201ENST00000363072 75 ntBASIC2.58□□□□□ -2
HOXC9P31274 RNU6-487P-201ENST00000365430 104 ntBASIC2.58□□□□□ -2
HOXC9P31274 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC2.58□□□□□ -2
HOXC9P31274 SET-203ENST00000372688 801 ntTSL 2 BASIC2.58□□□□□ -2
HOXC9P31274 RNU6-306P-201ENST00000384617 107 ntBASIC2.58□□□□□ -2
HOXC9P31274 RPS29P13-201ENST00000402041 169 ntBASIC2.58□□□□□ -2
HOXC9P31274 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC2.58□□□□□ -2
HOXC9P31274 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC2.58□□□□□ -2
HOXC9P31274 Z82205.1-201ENST00000428456 297 ntBASIC2.58□□□□□ -2
HOXC9P31274 SNAP23P1-201ENST00000433229 246 ntBASIC2.58□□□□□ -2
HOXC9P31274 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC2.58□□□□□ -2
HOXC9P31274 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC2.58□□□□□ -2
HOXC9P31274 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.58□□□□□ -2
HOXC9P31274 AC007969.2-201ENST00000441891 191 ntBASIC2.58□□□□□ -2
HOXC9P31274 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC2.58□□□□□ -2
HOXC9P31274 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC2.58□□□□□ -2
HOXC9P31274 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC2.58□□□□□ -2
HOXC9P31274 U8.21-201ENST00000459536 136 ntBASIC2.58□□□□□ -2
HOXC9P31274 MTND4P17-201ENST00000470444 350 ntBASIC2.58□□□□□ -2
HOXC9P31274 MTCO1P29-201ENST00000496868 288 ntBASIC2.58□□□□□ -2
HOXC9P31274 SMURF2P1-201ENST00000514992 481 ntBASIC2.58□□□□□ -2
HOXC9P31274 RNU6-612P-201ENST00000516909 102 ntBASIC2.58□□□□□ -2
HOXC9P31274 RNA5SP402-201ENST00000517148 110 ntBASIC2.58□□□□□ -2
HOXC9P31274 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC2.58□□□□□ -2
HOXC9P31274 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC2.58□□□□□ -2
HOXC9P31274 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC2.58□□□□□ -2
HOXC9P31274 BNIP3P16-201ENST00000589779 534 ntBASIC2.58□□□□□ -2
HOXC9P31274 AL022345.1-201ENST00000607292 135 ntBASIC2.58□□□□□ -2
HOXC9P31274 TPTEP1-208ENST00000636884 213 ntBASIC2.58□□□□□ -2
HOXC9P31274 MTND5P30-201ENST00000452896 1731 ntBASIC2.58□□□□□ -2
HOXC9P31274 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
HOXC9P31274 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.58□□□□□ -2
HOXC9P31274 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC2.57□□□□□ -2
HOXC9P31274 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC2.57□□□□□ -2
HOXC9P31274 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC2.57□□□□□ -2
HOXC9P31274 MIRLET7G-201ENST00000362280 84 ntBASIC2.57□□□□□ -2
HOXC9P31274 Y_RNA.70-201ENST00000362886 110 ntBASIC2.57□□□□□ -2
HOXC9P31274 Y_RNA.166-201ENST00000363730 102 ntBASIC2.57□□□□□ -2
HOXC9P31274 MIR521-1-201ENST00000384902 87 ntBASIC2.57□□□□□ -2
HOXC9P31274 MIR9-3-201ENST00000385084 90 ntBASIC2.57□□□□□ -2
HOXC9P31274 AL356432.1-201ENST00000405809 419 ntBASIC2.57□□□□□ -2
HOXC9P31274 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC2.57□□□□□ -2
HOXC9P31274 AL445685.2-201ENST00000422551 342 ntBASIC2.57□□□□□ -2
HOXC9P31274 RPS15AP7-201ENST00000439294 405 ntBASIC2.57□□□□□ -2
HOXC9P31274 RPL39P29-201ENST00000447779 157 ntBASIC2.57□□□□□ -2
HOXC9P31274 RPL22P13-201ENST00000493291 347 ntBASIC2.57□□□□□ -2
HOXC9P31274 RNA5SP112-201ENST00000515937 99 ntBASIC2.57□□□□□ -2
HOXC9P31274 RNU6-875P-201ENST00000516488 106 ntBASIC2.57□□□□□ -2
HOXC9P31274 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC2.57□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 99.8 ms