Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 AC121247.2-201ENST00000604776 136 ntBASIC1.12□□□□□ -2.23
CPSF4O95639 AC109347.2-201ENST00000610220 349 ntBASIC1.12□□□□□ -2.23
CPSF4O95639 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
CPSF4O95639 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
CPSF4O95639 SNORD98-201ENST00000636377 67 ntBASIC1.12□□□□□ -2.23
CPSF4O95639 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
CPSF4O95639 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC1.11□□□□□ -2.23
CPSF4O95639 Y_RNA.99-201ENST00000363138 105 ntBASIC1.11□□□□□ -2.23
CPSF4O95639 Y_RNA.159-201ENST00000363674 87 ntBASIC1.11□□□□□ -2.23
CPSF4O95639 SNORA7.1-201ENST00000363750 139 ntBASIC1.11□□□□□ -2.23
CPSF4O95639 RNU6-266P-201ENST00000364225 107 ntBASIC1.11□□□□□ -2.23
CPSF4O95639 RNU6-1141P-201ENST00000364520 107 ntBASIC1.11□□□□□ -2.23
CPSF4O95639 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC1.11□□□□□ -2.23
CPSF4O95639 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.11□□□□□ -2.23
CPSF4O95639 RNU6-903P-201ENST00000391270 109 ntBASIC1.11□□□□□ -2.23
CPSF4O95639 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC1.11□□□□□ -2.23
CPSF4O95639 MTATP6P18-201ENST00000417994 673 ntBASIC1.11□□□□□ -2.23
CPSF4O95639 AC244670.1-201ENST00000436879 112 ntBASIC1.11□□□□□ -2.23
CPSF4O95639 AC009474.2-201ENST00000451383 136 ntBASIC1.11□□□□□ -2.23
CPSF4O95639 SNRPFP3-201ENST00000457792 225 ntBASIC1.11□□□□□ -2.23
CPSF4O95639 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC1.11□□□□□ -2.23
CPSF4O95639 AC022447.4-201ENST00000504053 364 ntBASIC1.11□□□□□ -2.23
CPSF4O95639 ARL2BPP4-201ENST00000506854 471 ntBASIC1.11□□□□□ -2.23
CPSF4O95639 AC105417.1-201ENST00000514691 285 ntBASIC1.11□□□□□ -2.23
CPSF4O95639 Y_RNA.695-201ENST00000516715 107 ntBASIC1.11□□□□□ -2.23
CPSF4O95639 SNORA31.16-201ENST00000516773 139 ntBASIC1.11□□□□□ -2.23
CPSF4O95639 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.11□□□□□ -2.23
CPSF4O95639 AC084364.2-201ENST00000546924 395 ntBASIC1.11□□□□□ -2.23
CPSF4O95639 AC103996.1-201ENST00000555468 102 ntBASIC1.11□□□□□ -2.23
CPSF4O95639 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC1.11□□□□□ -2.23
CPSF4O95639 MIR5583-1-201ENST00000580941 59 ntBASIC1.11□□□□□ -2.23
CPSF4O95639 MTATP6P3-201ENST00000581686 676 ntBASIC1.11□□□□□ -2.23
CPSF4O95639 RSL24D1P11-201ENST00000591045 491 ntBASIC1.11□□□□□ -2.23
CPSF4O95639 AC110760.3-201ENST00000598794 467 ntBASIC1.11□□□□□ -2.23
CPSF4O95639 AC087752.4-201ENST00000605911 462 ntBASIC1.11□□□□□ -2.23
CPSF4O95639 AC025754.2-201ENST00000606491 432 ntBASIC1.11□□□□□ -2.23
CPSF4O95639 AC008536.2-201ENST00000607284 349 ntBASIC1.11□□□□□ -2.23
CPSF4O95639 AL022345.1-201ENST00000607292 135 ntBASIC1.11□□□□□ -2.23
CPSF4O95639 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC1.11□□□□□ -2.23
CPSF4O95639 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.11□□□□□ -2.23
CPSF4O95639 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.1□□□□□ -2.23
CPSF4O95639 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC1.1□□□□□ -2.23
CPSF4O95639 RNU6-552P-201ENST00000362869 119 ntBASIC1.1□□□□□ -2.23
CPSF4O95639 RNU6-1120P-201ENST00000362988 108 ntBASIC1.1□□□□□ -2.23
CPSF4O95639 SNORD32A-201ENST00000364805 84 ntBASIC1.1□□□□□ -2.23
CPSF4O95639 RNU6-827P-201ENST00000365553 106 ntBASIC1.1□□□□□ -2.23
CPSF4O95639 Y_RNA.399-201ENST00000383955 105 ntBASIC1.1□□□□□ -2.23
CPSF4O95639 RNU6-142P-201ENST00000384019 107 ntBASIC1.1□□□□□ -2.23
CPSF4O95639 MIR934-201ENST00000401241 83 ntBASIC1.1□□□□□ -2.23
CPSF4O95639 RPS29P13-201ENST00000402041 169 ntBASIC1.1□□□□□ -2.23
CPSF4O95639 MIR1285-1-201ENST00000408593 84 ntBASIC1.1□□□□□ -2.23
CPSF4O95639 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC1.1□□□□□ -2.23
CPSF4O95639 AL590135.1-201ENST00000422215 156 ntBASIC1.1□□□□□ -2.23
CPSF4O95639 MTCYBP8-201ENST00000422855 651 ntBASIC1.1□□□□□ -2.23
CPSF4O95639 AC019205.3-201ENST00000424573 156 ntBASIC1.1□□□□□ -2.23
CPSF4O95639 UBE2V1P4-201ENST00000425374 344 ntBASIC1.1□□□□□ -2.23
CPSF4O95639 CETN4P-201ENST00000432407 469 ntBASIC1.1□□□□□ -2.23
CPSF4O95639 AC016700.2-201ENST00000446011 156 ntBASIC1.1□□□□□ -2.23
CPSF4O95639 AL356010.1-201ENST00000456364 102 ntBASIC1.1□□□□□ -2.23
CPSF4O95639 RNU7-95P-201ENST00000459222 64 ntBASIC1.1□□□□□ -2.23
CPSF4O95639 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC1.1□□□□□ -2.23
CPSF4O95639 AC015911.1-201ENST00000495111 156 ntBASIC1.1□□□□□ -2.23
CPSF4O95639 AC093852.1-201ENST00000503587 266 ntBASIC1.1□□□□□ -2.23
CPSF4O95639 AC021146.2-201ENST00000504736 556 ntBASIC1.1□□□□□ -2.23
CPSF4O95639 AC008834.1-201ENST00000511612 175 ntBASIC1.1□□□□□ -2.23
CPSF4O95639 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC1.1□□□□□ -2.23
CPSF4O95639 COPS8P3-201ENST00000526024 482 ntBASIC1.1□□□□□ -2.23
CPSF4O95639 AL137161.1-201ENST00000532231 390 ntBASIC1.1□□□□□ -2.23
CPSF4O95639 AC007834.2-201ENST00000536310 343 ntBASIC1.1□□□□□ -2.23
CPSF4O95639 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC1.1□□□□□ -2.23
CPSF4O95639 AL160236.1-201ENST00000556317 195 ntBASIC1.1□□□□□ -2.23
CPSF4O95639 AC008269.2-201ENST00000561915 1105 ntBASIC1.1□□□□□ -2.23
CPSF4O95639 AC022254.1-201ENST00000567857 235 ntBASIC1.1□□□□□ -2.23
CPSF4O95639 MIR4713-201ENST00000582691 75 ntBASIC1.1□□□□□ -2.23
CPSF4O95639 MIR3136-201ENST00000583498 78 ntBASIC1.1□□□□□ -2.23
CPSF4O95639 AC023043.2-201ENST00000589678 1026 ntBASIC1.1□□□□□ -2.23
CPSF4O95639 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.1□□□□□ -2.23
CPSF4O95639 VN1R107P-201ENST00000601784 209 ntBASIC1.1□□□□□ -2.23
CPSF4O95639 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.1□□□□□ -2.23
CPSF4O95639 AP000654.2-201ENST00000605633 586 ntBASIC1.1□□□□□ -2.23
CPSF4O95639 AP001596.2-201ENST00000608410 312 ntBASIC1.1□□□□□ -2.23
CPSF4O95639 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC1.1□□□□□ -2.23
CPSF4O95639 AP000560.1-201ENST00000624150 1937 ntBASIC1.1□□□□□ -2.23
CPSF4O95639 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC1.09□□□□□ -2.23
CPSF4O95639 SNORA75-201ENST00000384158 137 ntBASIC1.09□□□□□ -2.23
CPSF4O95639 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC1.09□□□□□ -2.23
CPSF4O95639 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC1.09□□□□□ -2.23
CPSF4O95639 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC1.09□□□□□ -2.23
CPSF4O95639 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC1.09□□□□□ -2.23
CPSF4O95639 EIF4EP2-201ENST00000422816 654 ntBASIC1.09□□□□□ -2.23
CPSF4O95639 SNAP23P1-201ENST00000433229 246 ntBASIC1.09□□□□□ -2.23
CPSF4O95639 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC1.09□□□□□ -2.23
CPSF4O95639 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC1.09□□□□□ -2.23
CPSF4O95639 HMGN2P18-201ENST00000450680 270 ntBASIC1.09□□□□□ -2.23
CPSF4O95639 RNU7-167P-201ENST00000459160 62 ntBASIC1.09□□□□□ -2.23
CPSF4O95639 AK3P2-201ENST00000507976 429 ntBASIC1.09□□□□□ -2.23
CPSF4O95639 RNA5SP490-201ENST00000517141 136 ntBASIC1.09□□□□□ -2.23
CPSF4O95639 OSBPL9P5-201ENST00000542581 171 ntBASIC1.09□□□□□ -2.23
CPSF4O95639 HSPE1P4-201ENST00000550617 308 ntBASIC1.09□□□□□ -2.23
CPSF4O95639 HIF1AP1-201ENST00000553642 175 ntBASIC1.09□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 116.4 ms