Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ushbp1Q8R370 Pcsk5-202ENSMUST00000050715 5783 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Ushbp1Q8R370 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ushbp1Q8R370 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ushbp1Q8R370 Tex261-201ENSMUST00000014892 2984 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ushbp1Q8R370 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ushbp1Q8R370 Nfkbid-201ENSMUST00000046177 2039 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ushbp1Q8R370 Ybx2-202ENSMUST00000108601 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ushbp1Q8R370 Ubl7-201ENSMUST00000163329 1364 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
Ushbp1Q8R370 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
Ushbp1Q8R370 Haspin-201ENSMUST00000052140 2810 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
Ushbp1Q8R370 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ushbp1Q8R370 Poglut1-201ENSMUST00000036210 2758 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ushbp1Q8R370 Dars-201ENSMUST00000027602 2175 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ushbp1Q8R370 Zcchc17-202ENSMUST00000134159 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ushbp1Q8R370 Slbp-205ENSMUST00000139518 1191 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
Ushbp1Q8R370 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Ushbp1Q8R370 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC18.06■□□□□ 0.48
Ushbp1Q8R370 A830052D11Rik-201ENSMUST00000181729 1130 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Ushbp1Q8R370 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ushbp1Q8R370 Pacsin2-203ENSMUST00000171436 3693 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
Ushbp1Q8R370 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
Ushbp1Q8R370 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ushbp1Q8R370 Ppp2r2a-204ENSMUST00000225380 1988 ntBASIC18.06■□□□□ 0.48
Ushbp1Q8R370 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ushbp1Q8R370 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ushbp1Q8R370 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Ushbp1Q8R370 Ranbp9-201ENSMUST00000144326 3371 ntAPPRIS P2 TSL 5 BASIC18.05■□□□□ 0.48
Ushbp1Q8R370 Rgs7-203ENSMUST00000192227 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ushbp1Q8R370 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ushbp1Q8R370 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ushbp1Q8R370 Uhmk1-201ENSMUST00000027979 7864 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ushbp1Q8R370 Dand5-201ENSMUST00000065539 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ushbp1Q8R370 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ushbp1Q8R370 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC18.05■□□□□ 0.48
Ushbp1Q8R370 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Ushbp1Q8R370 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Ushbp1Q8R370 Cgrrf1-204ENSMUST00000140114 419 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Ushbp1Q8R370 Gm28577-201ENSMUST00000176106 741 ntTSL 5 BASIC18.05■□□□□ 0.48
Ushbp1Q8R370 Mir8098-201ENSMUST00000184011 137 ntBASIC18.05■□□□□ 0.48
Ushbp1Q8R370 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC18.05■□□□□ 0.48
Ushbp1Q8R370 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC18.05■□□□□ 0.48
Ushbp1Q8R370 Slain1-201ENSMUST00000069443 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ushbp1Q8R370 Ube2j2-213ENSMUST00000166489 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ushbp1Q8R370 Eda-202ENSMUST00000113775 5088 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Ushbp1Q8R370 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ushbp1Q8R370 Ctsd-202ENSMUST00000151120 2127 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ushbp1Q8R370 Gm14634-201ENSMUST00000139163 1662 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Ushbp1Q8R370 Gm32996-201ENSMUST00000199828 1447 ntBASIC18.05■□□□□ 0.48
Ushbp1Q8R370 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Ushbp1Q8R370 Ptpro-203ENSMUST00000167679 5096 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ushbp1Q8R370 Mrpl57-201ENSMUST00000022538 2877 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ushbp1Q8R370 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ushbp1Q8R370 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ushbp1Q8R370 Snap91-204ENSMUST00000098495 4150 ntAPPRIS P4 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ushbp1Q8R370 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ushbp1Q8R370 Aste1-202ENSMUST00000123807 2349 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
Ushbp1Q8R370 Gm13884-201ENSMUST00000118103 829 ntBASIC18.04■□□□□ 0.48
Ushbp1Q8R370 Gm15794-201ENSMUST00000120182 631 ntBASIC18.04■□□□□ 0.48
Ushbp1Q8R370 Uba52-203ENSMUST00000125184 711 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ushbp1Q8R370 Gm27459-201ENSMUST00000184860 107 ntBASIC18.04■□□□□ 0.48
Ushbp1Q8R370 Ptbp2-213ENSMUST00000200097 3777 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ushbp1Q8R370 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ushbp1Q8R370 Trip6-201ENSMUST00000024119 2168 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ushbp1Q8R370 H2-Q4-201ENSMUST00000081435 1793 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ushbp1Q8R370 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ushbp1Q8R370 Gldc-201ENSMUST00000025778 3754 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ushbp1Q8R370 Tssc4-206ENSMUST00000177841 1364 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
Ushbp1Q8R370 Naa50-204ENSMUST00000161326 4487 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ushbp1Q8R370 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Ushbp1Q8R370 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Ushbp1Q8R370 Emc8-201ENSMUST00000034277 4942 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Ushbp1Q8R370 Ell2-201ENSMUST00000001583 4382 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Ushbp1Q8R370 Inpp5f-201ENSMUST00000043138 4734 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Ushbp1Q8R370 Ppfibp1-201ENSMUST00000016631 4851 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
Ushbp1Q8R370 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC18.03■□□□□ 0.48
Ushbp1Q8R370 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC18.03■□□□□ 0.48
Ushbp1Q8R370 Dancr-204ENSMUST00000132389 2347 ntBASIC18.03■□□□□ 0.48
Ushbp1Q8R370 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Ushbp1Q8R370 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC18.03■□□□□ 0.48
Ushbp1Q8R370 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
Ushbp1Q8R370 Gm43347-201ENSMUST00000200226 580 ntBASIC18.03■□□□□ 0.48
Ushbp1Q8R370 AW822252-206ENSMUST00000208904 237 ntBASIC18.03■□□□□ 0.48
Ushbp1Q8R370 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Ushbp1Q8R370 Rpl27-201ENSMUST00000077856 614 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Ushbp1Q8R370 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Ushbp1Q8R370 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Ushbp1Q8R370 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC18.03■□□□□ 0.48
Ushbp1Q8R370 Hs3st2-201ENSMUST00000084628 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Ushbp1Q8R370 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Ushbp1Q8R370 Tfap2b-202ENSMUST00000064976 1946 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Ushbp1Q8R370 Rgs9-201ENSMUST00000020920 2434 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Ushbp1Q8R370 Atxn7l3-202ENSMUST00000107132 3706 ntAPPRIS P4 TSL 5 BASIC18.03■□□□□ 0.48
Ushbp1Q8R370 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
Ushbp1Q8R370 N6amt1-201ENSMUST00000054442 1884 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Ushbp1Q8R370 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Ushbp1Q8R370 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC18.03■□□□□ 0.48
Ushbp1Q8R370 Fam199x-201ENSMUST00000047852 8299 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Ushbp1Q8R370 Dok3-201ENSMUST00000047877 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Ushbp1Q8R370 Tmem50b-201ENSMUST00000023686 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 24.9 ms