Protein–RNA interactions for Protein: Q8CEC0

Nup88, Nuclear pore complex protein Nup88, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88Q8CEC0 Otp-201ENSMUST00000022195 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Nup88Q8CEC0 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Nup88Q8CEC0 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Nup88Q8CEC0 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Nup88Q8CEC0 Wnt10b-204ENSMUST00000226655 1807 ntBASIC19.03■□□□□ 0.64
Nup88Q8CEC0 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Nup88Q8CEC0 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Nup88Q8CEC0 0610025J13Rik-203ENSMUST00000180374 713 ntTSL 5 BASIC19.03■□□□□ 0.64
Nup88Q8CEC0 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Nup88Q8CEC0 Gm38973-201ENSMUST00000206810 878 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Nup88Q8CEC0 Umpk-ps-201ENSMUST00000211897 827 ntBASIC19.03■□□□□ 0.64
Nup88Q8CEC0 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Nup88Q8CEC0 Ephb4-201ENSMUST00000061244 4340 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
Nup88Q8CEC0 Tapt1-201ENSMUST00000055128 3513 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
Nup88Q8CEC0 Alox12-202ENSMUST00000108574 2314 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Nup88Q8CEC0 Bcap29-201ENSMUST00000020979 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Nup88Q8CEC0 Anapc7-203ENSMUST00000122010 2950 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
Nup88Q8CEC0 Galnt18-201ENSMUST00000049430 2575 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Nup88Q8CEC0 Epor-201ENSMUST00000006397 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Nup88Q8CEC0 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Nup88Q8CEC0 Tmem260-201ENSMUST00000111735 5485 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
Nup88Q8CEC0 Cyp46a1-201ENSMUST00000021684 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Nup88Q8CEC0 Btbd1-201ENSMUST00000026093 3001 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Nup88Q8CEC0 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC19.03■□□□□ 0.64
Nup88Q8CEC0 Urgcp-206ENSMUST00000170116 5528 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
Nup88Q8CEC0 Mccc1-201ENSMUST00000029259 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Nup88Q8CEC0 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Nup88Q8CEC0 Tmem229b-206ENSMUST00000174697 3697 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
Nup88Q8CEC0 Map3k7-201ENSMUST00000037607 5773 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Nup88Q8CEC0 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC19.02■□□□□ 0.64
Nup88Q8CEC0 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Nup88Q8CEC0 Bend6-204ENSMUST00000129464 1750 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Nup88Q8CEC0 Gcat-202ENSMUST00000171999 1763 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Nup88Q8CEC0 Gm7153-201ENSMUST00000117092 455 ntBASIC19.02■□□□□ 0.64
Nup88Q8CEC0 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Nup88Q8CEC0 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Nup88Q8CEC0 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Nup88Q8CEC0 Dennd4b-202ENSMUST00000129564 5647 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
Nup88Q8CEC0 Prkag2-203ENSMUST00000114975 2205 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Nup88Q8CEC0 Ptprd-206ENSMUST00000107289 9899 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
Nup88Q8CEC0 Sgsm2-201ENSMUST00000057631 4743 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Nup88Q8CEC0 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC19.02■□□□□ 0.64
Nup88Q8CEC0 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Nup88Q8CEC0 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.63
Nup88Q8CEC0 Taok3-202ENSMUST00000111975 2172 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
Nup88Q8CEC0 Apeh-206ENSMUST00000193254 2518 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Nup88Q8CEC0 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
Nup88Q8CEC0 H2-Q4-201ENSMUST00000081435 1793 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Nup88Q8CEC0 Pias4-201ENSMUST00000005064 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Nup88Q8CEC0 Sh2b1-201ENSMUST00000032978 3393 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
Nup88Q8CEC0 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC19.01■□□□□ 0.63
Nup88Q8CEC0 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
Nup88Q8CEC0 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC19.01■□□□□ 0.63
Nup88Q8CEC0 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC19.01■□□□□ 0.63
Nup88Q8CEC0 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Nup88Q8CEC0 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Nup88Q8CEC0 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Nup88Q8CEC0 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC19.01■□□□□ 0.63
Nup88Q8CEC0 Ptcra-201ENSMUST00000041012 1283 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Nup88Q8CEC0 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
Nup88Q8CEC0 Olfr1232-201ENSMUST00000099785 936 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
Nup88Q8CEC0 Arhgef2-202ENSMUST00000107510 4390 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Nup88Q8CEC0 Pdcl3-201ENSMUST00000027247 3914 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Nup88Q8CEC0 Usp27x-201ENSMUST00000115744 3240 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
Nup88Q8CEC0 Senp7-211ENSMUST00000202000 3218 ntTSL 2 BASIC19.01■□□□□ 0.63
Nup88Q8CEC0 Vps37a-201ENSMUST00000098817 6379 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Nup88Q8CEC0 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Nup88Q8CEC0 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC19.01■□□□□ 0.63
Nup88Q8CEC0 Tbp-202ENSMUST00000117593 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Nup88Q8CEC0 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC19■□□□□ 0.63
Nup88Q8CEC0 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC19■□□□□ 0.63
Nup88Q8CEC0 Ankrd50-202ENSMUST00000120875 4945 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Nup88Q8CEC0 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Nup88Q8CEC0 Tbcb-201ENSMUST00000006254 1416 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Nup88Q8CEC0 Mios-201ENSMUST00000040017 3710 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Nup88Q8CEC0 Zdhhc6-209ENSMUST00000225495 1711 ntBASIC19■□□□□ 0.63
Nup88Q8CEC0 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC19■□□□□ 0.63
Nup88Q8CEC0 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
Nup88Q8CEC0 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Nup88Q8CEC0 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Nup88Q8CEC0 Gm14964-202ENSMUST00000149574 716 ntTSL 1 (best) BASIC19■□□□□ 0.63
Nup88Q8CEC0 Pyy-201ENSMUST00000017455 555 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
Nup88Q8CEC0 Acaa1a-203ENSMUST00000175743 1219 ntTSL 5 BASIC19■□□□□ 0.63
Nup88Q8CEC0 Acaa1a-207ENSMUST00000176397 996 ntTSL 5 BASIC19■□□□□ 0.63
Nup88Q8CEC0 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC19■□□□□ 0.63
Nup88Q8CEC0 Prima1-201ENSMUST00000074416 909 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Nup88Q8CEC0 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC19■□□□□ 0.63
Nup88Q8CEC0 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC19■□□□□ 0.63
Nup88Q8CEC0 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC19■□□□□ 0.63
Nup88Q8CEC0 Gm26889-201ENSMUST00000181523 2252 ntTSL 5 BASIC19■□□□□ 0.63
Nup88Q8CEC0 Ssfa2-201ENSMUST00000111784 4999 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
Nup88Q8CEC0 Ptprj-204ENSMUST00000168621 7634 ntAPPRIS P4 TSL 1 (best) BASIC19■□□□□ 0.63
Nup88Q8CEC0 Syngap1-204ENSMUST00000194598 6011 ntAPPRIS P2 TSL 5 BASIC19■□□□□ 0.63
Nup88Q8CEC0 Anapc2-201ENSMUST00000028341 3004 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Nup88Q8CEC0 Gm17200-201ENSMUST00000170214 2022 ntTSL 1 (best) BASIC19■□□□□ 0.63
Nup88Q8CEC0 Srpr-201ENSMUST00000034541 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Nup88Q8CEC0 March8-201ENSMUST00000079012 4450 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Nup88Q8CEC0 Sh3yl1-201ENSMUST00000020997 1750 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
Nup88Q8CEC0 Chchd4-201ENSMUST00000040835 3472 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Nup88Q8CEC0 Wdr12-202ENSMUST00000117438 3251 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Retrieved 100 of 76,532 protein–RNA pairs in 34.3 ms