Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC17.84■□□□□ 0.45
Trim47Q8C0E3 Mir6404-201ENSMUST00000183699 94 ntBASIC17.84■□□□□ 0.45
Trim47Q8C0E3 AC133598.3-202ENSMUST00000224219 531 ntBASIC17.84■□□□□ 0.45
Trim47Q8C0E3 AC159301.1-201ENSMUST00000225130 1182 ntBASIC17.84■□□□□ 0.45
Trim47Q8C0E3 Gm5617-201ENSMUST00000048824 531 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
Trim47Q8C0E3 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim47Q8C0E3 Prr14-201ENSMUST00000033095 2402 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim47Q8C0E3 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim47Q8C0E3 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim47Q8C0E3 Was-201ENSMUST00000033505 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim47Q8C0E3 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Trim47Q8C0E3 Acp7-201ENSMUST00000040112 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim47Q8C0E3 Nox4-202ENSMUST00000068829 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim47Q8C0E3 Sfrp1-201ENSMUST00000033952 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim47Q8C0E3 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Trim47Q8C0E3 Shh-201ENSMUST00000002708 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Trim47Q8C0E3 Plaa-201ENSMUST00000107107 2784 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Trim47Q8C0E3 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
Trim47Q8C0E3 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC17.83■□□□□ 0.45
Trim47Q8C0E3 Pard3-226ENSMUST00000162907 4682 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trim47Q8C0E3 Gm11452-201ENSMUST00000122376 690 ntBASIC17.83■□□□□ 0.44
Trim47Q8C0E3 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trim47Q8C0E3 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
Trim47Q8C0E3 Sumo1-201ENSMUST00000091374 1215 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trim47Q8C0E3 Olfr1272-201ENSMUST00000099750 927 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
Trim47Q8C0E3 Gpr137b-201ENSMUST00000021738 2971 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trim47Q8C0E3 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trim47Q8C0E3 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trim47Q8C0E3 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC17.83■□□□□ 0.44
Trim47Q8C0E3 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Trim47Q8C0E3 Fancg-201ENSMUST00000030165 2771 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trim47Q8C0E3 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC17.83■□□□□ 0.44
Trim47Q8C0E3 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trim47Q8C0E3 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
Trim47Q8C0E3 Gm42743-201ENSMUST00000051089 1511 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Trim47Q8C0E3 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC17.82■□□□□ 0.44
Trim47Q8C0E3 Olah-202ENSMUST00000115087 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim47Q8C0E3 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Trim47Q8C0E3 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim47Q8C0E3 Ch25h-201ENSMUST00000050562 1350 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
Trim47Q8C0E3 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC17.82■□□□□ 0.44
Trim47Q8C0E3 Sox13-201ENSMUST00000094551 1842 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim47Q8C0E3 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC17.82■□□□□ 0.44
Trim47Q8C0E3 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim47Q8C0E3 Naa10-206ENSMUST00000114391 834 ntTSL 5 BASIC17.82■□□□□ 0.44
Trim47Q8C0E3 Vti1a-206ENSMUST00000225529 1244 ntBASIC17.82■□□□□ 0.44
Trim47Q8C0E3 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
Trim47Q8C0E3 Cdc25a-201ENSMUST00000094324 3632 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim47Q8C0E3 Rap1gap-202ENSMUST00000097837 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim47Q8C0E3 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Trim47Q8C0E3 Ankrd10-201ENSMUST00000033905 2285 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim47Q8C0E3 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim47Q8C0E3 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim47Q8C0E3 Prdm12-201ENSMUST00000113470 2471 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
Trim47Q8C0E3 Neu1-201ENSMUST00000007253 2474 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim47Q8C0E3 Sh2b1-202ENSMUST00000205340 3366 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim47Q8C0E3 Smox-203ENSMUST00000110180 1617 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Trim47Q8C0E3 4933405L10Rik-201ENSMUST00000013302 1214 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim47Q8C0E3 Entpd4-205ENSMUST00000184314 989 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Trim47Q8C0E3 Gm6296-201ENSMUST00000222599 943 ntBASIC17.81■□□□□ 0.44
Trim47Q8C0E3 Entpd4b-201ENSMUST00000064846 989 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Trim47Q8C0E3 Ydjc-201ENSMUST00000069064 1297 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim47Q8C0E3 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim47Q8C0E3 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
Trim47Q8C0E3 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
Trim47Q8C0E3 Luc7l2-208ENSMUST00000161538 4253 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Trim47Q8C0E3 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim47Q8C0E3 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
Trim47Q8C0E3 Gid8-201ENSMUST00000029090 1655 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim47Q8C0E3 Gm29455-202ENSMUST00000186697 1369 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Trim47Q8C0E3 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim47Q8C0E3 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim47Q8C0E3 Gm25406-201ENSMUST00000157599 105 ntBASIC17.8■□□□□ 0.44
Trim47Q8C0E3 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC17.8■□□□□ 0.44
Trim47Q8C0E3 Gm44357-201ENSMUST00000195897 142 ntBASIC17.8■□□□□ 0.44
Trim47Q8C0E3 Gm19658-201ENSMUST00000196231 138 ntBASIC17.8■□□□□ 0.44
Trim47Q8C0E3 Gm44367-201ENSMUST00000196836 138 ntBASIC17.8■□□□□ 0.44
Trim47Q8C0E3 Gm44350-201ENSMUST00000197197 138 ntBASIC17.8■□□□□ 0.44
Trim47Q8C0E3 Gm44390-201ENSMUST00000197533 144 ntBASIC17.8■□□□□ 0.44
Trim47Q8C0E3 Gm44313-201ENSMUST00000198018 138 ntBASIC17.8■□□□□ 0.44
Trim47Q8C0E3 Gm44486-201ENSMUST00000198508 138 ntBASIC17.8■□□□□ 0.44
Trim47Q8C0E3 Gm44314-201ENSMUST00000199263 138 ntBASIC17.8■□□□□ 0.44
Trim47Q8C0E3 Gm44394-201ENSMUST00000199558 138 ntBASIC17.8■□□□□ 0.44
Trim47Q8C0E3 Gm44484-201ENSMUST00000199873 138 ntBASIC17.8■□□□□ 0.44
Trim47Q8C0E3 Gm44466-201ENSMUST00000200264 138 ntBASIC17.8■□□□□ 0.44
Trim47Q8C0E3 Gm44359-201ENSMUST00000200671 138 ntBASIC17.8■□□□□ 0.44
Trim47Q8C0E3 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC17.8■□□□□ 0.44
Trim47Q8C0E3 Gpank1-201ENSMUST00000052167 1295 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim47Q8C0E3 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Trim47Q8C0E3 Slc5a10-203ENSMUST00000148584 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim47Q8C0E3 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
Trim47Q8C0E3 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC17.8■□□□□ 0.44
Trim47Q8C0E3 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim47Q8C0E3 Rcc1-203ENSMUST00000105951 2326 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
Trim47Q8C0E3 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Trim47Q8C0E3 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim47Q8C0E3 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC17.79■□□□□ 0.44
Trim47Q8C0E3 Ptbp2-213ENSMUST00000200097 3777 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim47Q8C0E3 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC17.79■□□□□ 0.44
Trim47Q8C0E3 Taf6l-212ENSMUST00000177216 2167 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 57.8 ms