Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Gm29103-201ENSMUST00000191034 598 ntTSL 5 BASIC19.02■□□□□ 0.64
Trim56Q80VI1 Vti1a-206ENSMUST00000225529 1244 ntBASIC19.02■□□□□ 0.64
Trim56Q80VI1 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Trim56Q80VI1 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Trim56Q80VI1 Nup98-205ENSMUST00000211022 3132 ntTSL 2 BASIC19.02■□□□□ 0.63
Trim56Q80VI1 Prelid3a-201ENSMUST00000025411 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Trim56Q80VI1 Fbxl19-204ENSMUST00000188580 2601 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
Trim56Q80VI1 Prlhr-201ENSMUST00000051277 1572 ntAPPRIS P1 BASIC19.02■□□□□ 0.63
Trim56Q80VI1 Pnpt1-201ENSMUST00000020756 2707 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Trim56Q80VI1 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC19.01■□□□□ 0.63
Trim56Q80VI1 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trim56Q80VI1 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
Trim56Q80VI1 Mier2-203ENSMUST00000165028 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trim56Q80VI1 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trim56Q80VI1 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trim56Q80VI1 Oas1g-201ENSMUST00000086368 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trim56Q80VI1 Txnrd2-215ENSMUST00000206151 2874 ntAPPRIS P2 TSL 5 BASIC19.01■□□□□ 0.63
Trim56Q80VI1 Sytl1-202ENSMUST00000105908 1730 ntTSL 5 BASIC19.01■□□□□ 0.63
Trim56Q80VI1 Pih1d1-202ENSMUST00000107811 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trim56Q80VI1 Entpd4-205ENSMUST00000184314 989 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Trim56Q80VI1 Gm43347-201ENSMUST00000200226 580 ntBASIC19.01■□□□□ 0.63
Trim56Q80VI1 Ten1-201ENSMUST00000021130 902 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trim56Q80VI1 Entpd4b-201ENSMUST00000064846 989 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Trim56Q80VI1 Sumo1-201ENSMUST00000091374 1215 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trim56Q80VI1 Pfkfb4-203ENSMUST00000198140 3488 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trim56Q80VI1 Rmnd5b-201ENSMUST00000001081 1946 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trim56Q80VI1 Fdps-203ENSMUST00000196709 1382 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
Trim56Q80VI1 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trim56Q80VI1 Hap1-201ENSMUST00000103124 2120 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trim56Q80VI1 Zc3h14-204ENSMUST00000110105 3514 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trim56Q80VI1 Apoa5-202ENSMUST00000121598 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trim56Q80VI1 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
Trim56Q80VI1 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC19.01■□□□□ 0.63
Trim56Q80VI1 Chst5-201ENSMUST00000034430 2182 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Trim56Q80VI1 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC19■□□□□ 0.63
Trim56Q80VI1 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC19■□□□□ 0.63
Trim56Q80VI1 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC19■□□□□ 0.63
Trim56Q80VI1 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC19■□□□□ 0.63
Trim56Q80VI1 Tm4sf5-201ENSMUST00000019063 1000 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Trim56Q80VI1 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC19■□□□□ 0.63
Trim56Q80VI1 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Trim56Q80VI1 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC19■□□□□ 0.63
Trim56Q80VI1 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC19■□□□□ 0.63
Trim56Q80VI1 Ahsa1-201ENSMUST00000021425 1377 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Trim56Q80VI1 Akp-ps1-202ENSMUST00000212812 1959 ntTSL 5 BASIC19■□□□□ 0.63
Trim56Q80VI1 Cnih3-201ENSMUST00000027795 2668 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Trim56Q80VI1 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC19■□□□□ 0.63
Trim56Q80VI1 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Trim56Q80VI1 Mettl7a2-202ENSMUST00000176287 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Trim56Q80VI1 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC19■□□□□ 0.63
Trim56Q80VI1 Mettl7a2-201ENSMUST00000088142 1800 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
Trim56Q80VI1 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Trim56Q80VI1 Rab9-202ENSMUST00000112091 1447 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Trim56Q80VI1 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Trim56Q80VI1 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Trim56Q80VI1 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Trim56Q80VI1 Dpys-201ENSMUST00000022915 2466 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Trim56Q80VI1 Add1-204ENSMUST00000114338 4007 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Trim56Q80VI1 Acp7-201ENSMUST00000040112 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Trim56Q80VI1 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Trim56Q80VI1 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Trim56Q80VI1 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
Trim56Q80VI1 Mras-203ENSMUST00000122384 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Trim56Q80VI1 Edf1-201ENSMUST00000015236 722 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Trim56Q80VI1 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC18.99■□□□□ 0.63
Trim56Q80VI1 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Trim56Q80VI1 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
Trim56Q80VI1 Gm10190-201ENSMUST00000086549 324 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
Trim56Q80VI1 Olfr632-201ENSMUST00000098189 954 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
Trim56Q80VI1 Plpp6-201ENSMUST00000045674 2859 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
Trim56Q80VI1 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Trim56Q80VI1 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Trim56Q80VI1 Mesp2-201ENSMUST00000107394 1944 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Trim56Q80VI1 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Trim56Q80VI1 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
Trim56Q80VI1 Rabggta-201ENSMUST00000062861 2338 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Trim56Q80VI1 Ifnar1-202ENSMUST00000117748 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Trim56Q80VI1 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Trim56Q80VI1 Ngly1-201ENSMUST00000022310 2935 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Trim56Q80VI1 Ehmt2-202ENSMUST00000078061 3746 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Trim56Q80VI1 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Trim56Q80VI1 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Trim56Q80VI1 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Trim56Q80VI1 Ch25h-201ENSMUST00000050562 1350 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
Trim56Q80VI1 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Trim56Q80VI1 Dctd-201ENSMUST00000033966 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Trim56Q80VI1 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
Trim56Q80VI1 Naa10-206ENSMUST00000114391 834 ntTSL 5 BASIC18.98■□□□□ 0.63
Trim56Q80VI1 Slc19a2-204ENSMUST00000169394 894 ntTSL 5 BASIC18.98■□□□□ 0.63
Trim56Q80VI1 4931422A03Rik-201ENSMUST00000056170 1037 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Trim56Q80VI1 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
Trim56Q80VI1 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Trim56Q80VI1 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
Trim56Q80VI1 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Trim56Q80VI1 Asb2-204ENSMUST00000149431 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Trim56Q80VI1 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Trim56Q80VI1 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Trim56Q80VI1 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC18.97■□□□□ 0.63
Trim56Q80VI1 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Trim56Q80VI1 Aqp1-201ENSMUST00000004774 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Retrieved 100 of 76,532 protein–RNA pairs in 34.1 ms