Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Batf-201ENSMUST00000040536 955 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trim28Q62318 Rmnd5b-201ENSMUST00000001081 1946 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trim28Q62318 Psmd14-201ENSMUST00000028278 1541 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trim28Q62318 Dhodh-209ENSMUST00000143900 1455 ntTSL 5 BASIC20.88■□□□□ 0.93
Trim28Q62318 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
Trim28Q62318 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim28Q62318 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim28Q62318 Tead3-201ENSMUST00000114799 2448 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim28Q62318 Anp32e-201ENSMUST00000015893 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim28Q62318 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim28Q62318 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC20.87■□□□□ 0.93
Trim28Q62318 Gm21586-201ENSMUST00000107988 264 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim28Q62318 Gm21953-201ENSMUST00000108002 264 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
Trim28Q62318 Gm14140-201ENSMUST00000119999 995 ntBASIC20.87■□□□□ 0.93
Trim28Q62318 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim28Q62318 Rpl39l-202ENSMUST00000121292 550 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
Trim28Q62318 Gm11467-201ENSMUST00000129407 674 ntTSL 3 BASIC20.87■□□□□ 0.93
Trim28Q62318 A230065H16Rik-201ENSMUST00000150384 670 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim28Q62318 Gm20878-208ENSMUST00000181518 264 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim28Q62318 Gm43935-201ENSMUST00000203569 1050 ntBASIC20.87■□□□□ 0.93
Trim28Q62318 Zfp787-206ENSMUST00000208746 535 ntTSL 2 BASIC20.87■□□□□ 0.93
Trim28Q62318 Gins1-201ENSMUST00000028948 1087 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim28Q62318 Mrpl46-201ENSMUST00000032841 1134 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim28Q62318 Ly6g6f-201ENSMUST00000038507 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim28Q62318 2010003K11Rik-201ENSMUST00000048482 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim28Q62318 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
Trim28Q62318 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim28Q62318 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC20.87■□□□□ 0.93
Trim28Q62318 Arrdc1-202ENSMUST00000102935 1574 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim28Q62318 Gnb2-212ENSMUST00000150063 1569 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim28Q62318 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim28Q62318 Prdm12-201ENSMUST00000113470 2471 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
Trim28Q62318 Cadm1-204ENSMUST00000114548 4482 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Trim28Q62318 Mff-212ENSMUST00000162003 2087 ntTSL 5 BASIC20.87■□□□□ 0.93
Trim28Q62318 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim28Q62318 Gm10532-201ENSMUST00000181913 2301 ntTSL 2 BASIC20.87■□□□□ 0.93
Trim28Q62318 Cul1-201ENSMUST00000031697 3161 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trim28Q62318 Cd151-203ENSMUST00000177840 1708 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
Trim28Q62318 Psmd12-203ENSMUST00000106752 1955 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Trim28Q62318 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
Trim28Q62318 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC20.86■□□□□ 0.93
Trim28Q62318 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trim28Q62318 Nt5c-202ENSMUST00000106530 836 ntTSL 3 BASIC20.86■□□□□ 0.93
Trim28Q62318 Gm13830-202ENSMUST00000144202 381 ntTSL 3 BASIC20.86■□□□□ 0.93
Trim28Q62318 Dusp13-208ENSMUST00000183698 1019 ntTSL 5 BASIC20.86■□□□□ 0.93
Trim28Q62318 Sox2ot-202ENSMUST00000196058 753 ntTSL 3 BASIC20.86■□□□□ 0.93
Trim28Q62318 Gm42670-201ENSMUST00000201816 1292 ntBASIC20.86■□□□□ 0.93
Trim28Q62318 Gm43332-201ENSMUST00000202511 1044 ntBASIC20.86■□□□□ 0.93
Trim28Q62318 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trim28Q62318 Olfr30-201ENSMUST00000055204 1066 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
Trim28Q62318 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trim28Q62318 Scrt1-202ENSMUST00000164703 3478 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
Trim28Q62318 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trim28Q62318 Sgpp1-201ENSMUST00000021450 3323 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trim28Q62318 Ppp2r1b-211ENSMUST00000176798 2074 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
Trim28Q62318 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC20.85■□□□□ 0.93
Trim28Q62318 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Trim28Q62318 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC20.85■□□□□ 0.93
Trim28Q62318 Tbc1d7-202ENSMUST00000179852 1246 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Trim28Q62318 Gm27002-201ENSMUST00000182789 620 ntTSL 2 BASIC20.85■□□□□ 0.93
Trim28Q62318 AC147366.1-201ENSMUST00000227671 852 ntBASIC20.85■□□□□ 0.93
Trim28Q62318 Nrip2-202ENSMUST00000120405 1468 ntTSL 2 BASIC20.85■□□□□ 0.93
Trim28Q62318 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Trim28Q62318 Ube2i-207ENSMUST00000172868 2755 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Trim28Q62318 Taok3-202ENSMUST00000111975 2172 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Trim28Q62318 Gstt2-201ENSMUST00000038257 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Trim28Q62318 Pcbp3-206ENSMUST00000168465 1748 ntAPPRIS P3 TSL 5 BASIC20.84■□□□□ 0.93
Trim28Q62318 Tuba8-201ENSMUST00000032233 2263 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trim28Q62318 Mis18a-201ENSMUST00000099554 1333 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trim28Q62318 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trim28Q62318 AC122301.2-201ENSMUST00000219020 1474 ntTSL 5 BASIC20.84■□□□□ 0.93
Trim28Q62318 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
Trim28Q62318 Dok1-201ENSMUST00000089651 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trim28Q62318 Izumo1r-203ENSMUST00000117620 1095 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Trim28Q62318 Gm13403-202ENSMUST00000134271 674 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Trim28Q62318 Tmem9-205ENSMUST00000165125 901 ntAPPRIS P1 TSL 3 BASIC20.84■□□□□ 0.93
Trim28Q62318 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trim28Q62318 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trim28Q62318 Tmem81-202ENSMUST00000188789 1751 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
Trim28Q62318 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trim28Q62318 P2rx6-203ENSMUST00000171002 1353 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Trim28Q62318 Mettl7a1-201ENSMUST00000067752 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trim28Q62318 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Trim28Q62318 Slc15a3-201ENSMUST00000025646 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Trim28Q62318 AC122901.1-201ENSMUST00000214203 1790 ntBASIC20.83■□□□□ 0.93
Trim28Q62318 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Trim28Q62318 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Trim28Q62318 Washc1-202ENSMUST00000116556 2887 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Trim28Q62318 Ifrd2-201ENSMUST00000010192 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Trim28Q62318 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC20.83■□□□□ 0.93
Trim28Q62318 Gm20878-206ENSMUST00000153997 903 ntAPPRIS P2 TSL 2 BASIC20.83■□□□□ 0.93
Trim28Q62318 Gm17114-201ENSMUST00000164716 511 ntTSL 3 BASIC20.83■□□□□ 0.93
Trim28Q62318 Gm20680-201ENSMUST00000176881 789 ntTSL 5 BASIC20.83■□□□□ 0.93
Trim28Q62318 Gm38948-201ENSMUST00000210035 688 ntTSL 3 BASIC20.83■□□□□ 0.93
Trim28Q62318 AC127302.2-201ENSMUST00000215212 268 ntBASIC20.83■□□□□ 0.93
Trim28Q62318 BC031181-201ENSMUST00000040284 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Trim28Q62318 Ly6k-201ENSMUST00000060301 791 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Trim28Q62318 Penk-201ENSMUST00000070375 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Trim28Q62318 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Trim28Q62318 Rbpms-203ENSMUST00000053251 2466 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 29.7 ms