Protein–RNA interactions for Protein: Q62158

Trim27, Zinc finger protein RFP, mousemouse

Predictions only

Length 513 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim27Q62158 Gch1-201ENSMUST00000089959 2775 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Trim27Q62158 Ip6k2-206ENSMUST00000193560 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Trim27Q62158 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Trim27Q62158 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Trim27Q62158 Senp7-211ENSMUST00000202000 3218 ntTSL 2 BASIC19.81■□□□□ 0.76
Trim27Q62158 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim27Q62158 Lrrn2-201ENSMUST00000027706 3428 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim27Q62158 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim27Q62158 9530082P21Rik-202ENSMUST00000181291 1798 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Trim27Q62158 Gabrd-201ENSMUST00000030925 1921 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim27Q62158 Mrps2-201ENSMUST00000038600 2080 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim27Q62158 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC19.81■□□□□ 0.76
Trim27Q62158 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim27Q62158 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim27Q62158 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
Trim27Q62158 E2f7-205ENSMUST00000173634 827 ntTSL 2 BASIC19.81■□□□□ 0.76
Trim27Q62158 Qdpr-208ENSMUST00000197946 1206 ntTSL 5 BASIC19.81■□□□□ 0.76
Trim27Q62158 4933428G20Rik-201ENSMUST00000056955 1425 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim27Q62158 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim27Q62158 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim27Q62158 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim27Q62158 Eda-203ENSMUST00000113776 5105 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Trim27Q62158 Elf2-201ENSMUST00000062009 3353 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim27Q62158 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim27Q62158 Ubl7-201ENSMUST00000163329 1364 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
Trim27Q62158 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim27Q62158 Brpf1-203ENSMUST00000113121 4603 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
Trim27Q62158 Lrrc42-201ENSMUST00000030360 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Trim27Q62158 Taz-201ENSMUST00000069722 1851 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
Trim27Q62158 Ghrhr-201ENSMUST00000063578 1550 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Trim27Q62158 Wbp2-202ENSMUST00000106444 1012 ntTSL 2 BASIC19.8■□□□□ 0.76
Trim27Q62158 Gm13312-201ENSMUST00000119631 718 ntBASIC19.8■□□□□ 0.76
Trim27Q62158 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Trim27Q62158 AC153794.1-201ENSMUST00000169148 126 ntBASIC19.8■□□□□ 0.76
Trim27Q62158 Gm27704-201ENSMUST00000185094 107 ntBASIC19.8■□□□□ 0.76
Trim27Q62158 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC19.8■□□□□ 0.76
Trim27Q62158 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Trim27Q62158 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Trim27Q62158 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
Trim27Q62158 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Trim27Q62158 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC19.8■□□□□ 0.76
Trim27Q62158 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Trim27Q62158 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Trim27Q62158 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
Trim27Q62158 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
Trim27Q62158 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC19.79■□□□□ 0.76
Trim27Q62158 Dgkz-201ENSMUST00000028667 3584 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trim27Q62158 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trim27Q62158 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Trim27Q62158 Jdp2-202ENSMUST00000171754 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trim27Q62158 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trim27Q62158 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC19.79■□□□□ 0.76
Trim27Q62158 9530059O14Rik-202ENSMUST00000181682 2093 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Trim27Q62158 4933436I20Rik-201ENSMUST00000189405 1434 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Trim27Q62158 Gm16675-202ENSMUST00000208508 2586 ntTSL 2 BASIC19.79■□□□□ 0.76
Trim27Q62158 Anks6-201ENSMUST00000084616 3552 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
Trim27Q62158 Cd82-204ENSMUST00000111257 1003 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
Trim27Q62158 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
Trim27Q62158 Celrr-203ENSMUST00000185678 937 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Trim27Q62158 Gm38119-201ENSMUST00000192027 755 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
Trim27Q62158 Gm33142-201ENSMUST00000193913 867 ntBASIC19.79■□□□□ 0.76
Trim27Q62158 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC19.79■□□□□ 0.76
Trim27Q62158 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC19.79■□□□□ 0.76
Trim27Q62158 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trim27Q62158 Ovol2-202ENSMUST00000103171 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trim27Q62158 Ndufv2-203ENSMUST00000143987 1540 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trim27Q62158 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trim27Q62158 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trim27Q62158 Wwox-207ENSMUST00000160862 1715 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Trim27Q62158 Grip1-201ENSMUST00000041962 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Trim27Q62158 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Trim27Q62158 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Trim27Q62158 Synpo-205ENSMUST00000130044 4970 ntAPPRIS P3 TSL 2 BASIC19.78■□□□□ 0.76
Trim27Q62158 Gm38327-201ENSMUST00000195852 1755 ntBASIC19.78■□□□□ 0.76
Trim27Q62158 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
Trim27Q62158 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
Trim27Q62158 Ppp4r3a-201ENSMUST00000048305 4516 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Trim27Q62158 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Trim27Q62158 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC19.78■□□□□ 0.76
Trim27Q62158 Gm7284-201ENSMUST00000131667 944 ntBASIC19.78■□□□□ 0.76
Trim27Q62158 Gm7507-201ENSMUST00000183053 1008 ntBASIC19.78■□□□□ 0.76
Trim27Q62158 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC19.78■□□□□ 0.76
Trim27Q62158 Gm7977-201ENSMUST00000193787 748 ntBASIC19.78■□□□□ 0.76
Trim27Q62158 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Trim27Q62158 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Trim27Q62158 Pqlc1-205ENSMUST00000131780 2080 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
Trim27Q62158 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Trim27Q62158 Adra2c-201ENSMUST00000049545 3445 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
Trim27Q62158 Snx27-202ENSMUST00000107283 3531 ntAPPRIS P4 TSL 1 (best) BASIC19.78■□□□□ 0.76
Trim27Q62158 Tbc1d9b-202ENSMUST00000101270 5213 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
Trim27Q62158 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Trim27Q62158 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Trim27Q62158 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Trim27Q62158 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Trim27Q62158 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Trim27Q62158 Erg-207ENSMUST00000171646 1519 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Trim27Q62158 Klk12-202ENSMUST00000107970 1115 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
Trim27Q62158 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Trim27Q62158 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC19.77■□□□□ 0.76
Trim27Q62158 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC19.77■□□□□ 0.76
Retrieved 100 of 76,532 protein–RNA pairs in 40.7 ms