Protein–RNA interactions for Protein: P97503

Nkx3-2, Homeobox protein Nkx-3.2, mousemouse

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-2P97503 Cnppd1-208ENSMUST00000190679 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Nkx3-2P97503 Pwwp2a-201ENSMUST00000061070 3277 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Nkx3-2P97503 Kcnk10-203ENSMUST00000221305 1357 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Nkx3-2P97503 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Nkx3-2P97503 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Nkx3-2P97503 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Nkx3-2P97503 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC15.22■□□□□ 0.03
Nkx3-2P97503 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Nkx3-2P97503 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC15.22■□□□□ 0.03
Nkx3-2P97503 Trim8-201ENSMUST00000026008 3230 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Nkx3-2P97503 Arhgap42-201ENSMUST00000093893 6116 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Nkx3-2P97503 Gm13216-201ENSMUST00000117145 591 ntBASIC15.22■□□□□ 0.03
Nkx3-2P97503 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Nkx3-2P97503 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC15.22■□□□□ 0.03
Nkx3-2P97503 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Nkx3-2P97503 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Nkx3-2P97503 Nmu-201ENSMUST00000031146 828 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Nkx3-2P97503 Higd1a-201ENSMUST00000060251 2232 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Nkx3-2P97503 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Nkx3-2P97503 Knl1-201ENSMUST00000028799 5527 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Nkx3-2P97503 Dmgdh-201ENSMUST00000048001 2992 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Nkx3-2P97503 H2afy2-201ENSMUST00000020283 2175 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Nkx3-2P97503 Ppp3cb-206ENSMUST00000161989 2322 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Nkx3-2P97503 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Nkx3-2P97503 Tmem229b-206ENSMUST00000174697 3697 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Nkx3-2P97503 Zkscan3-204ENSMUST00000117721 5788 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Nkx3-2P97503 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Nkx3-2P97503 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Nkx3-2P97503 Phf7-201ENSMUST00000022459 2084 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Nkx3-2P97503 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Nkx3-2P97503 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Nkx3-2P97503 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Nkx3-2P97503 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Nkx3-2P97503 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Nkx3-2P97503 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Nkx3-2P97503 Soga3-201ENSMUST00000092629 4105 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Nkx3-2P97503 App-202ENSMUST00000226232 3120 ntAPPRIS ALT2 BASIC15.21■□□□□ 0.03
Nkx3-2P97503 Gm17112-201ENSMUST00000163194 432 ntTSL 3 BASIC15.21■□□□□ 0.03
Nkx3-2P97503 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC15.21■□□□□ 0.03
Nkx3-2P97503 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Nkx3-2P97503 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Nkx3-2P97503 Olfr571-201ENSMUST00000061738 969 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
Nkx3-2P97503 Carmil2-201ENSMUST00000062574 2526 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Nkx3-2P97503 Gda-201ENSMUST00000087600 5428 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Nkx3-2P97503 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Nkx3-2P97503 Tpm2-202ENSMUST00000107913 2098 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
Nkx3-2P97503 Abhd5-204ENSMUST00000156520 3157 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Nkx3-2P97503 Gm43598-201ENSMUST00000202482 2479 ntBASIC15.21■□□□□ 0.02
Nkx3-2P97503 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Nkx3-2P97503 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Nkx3-2P97503 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
Nkx3-2P97503 Atxn7l3-201ENSMUST00000073234 3688 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Nkx3-2P97503 Dusp14-205ENSMUST00000164891 1454 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Nkx3-2P97503 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Nkx3-2P97503 Eda-202ENSMUST00000113775 5088 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Nkx3-2P97503 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Nkx3-2P97503 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Nkx3-2P97503 Ppt1-201ENSMUST00000030412 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Nkx3-2P97503 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Nkx3-2P97503 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Nkx3-2P97503 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Nkx3-2P97503 Anks1b-219ENSMUST00000182600 1697 ntTSL 5 BASIC15.2■□□□□ 0.02
Nkx3-2P97503 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC15.2■□□□□ 0.02
Nkx3-2P97503 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Nkx3-2P97503 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Nkx3-2P97503 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Nkx3-2P97503 Rhoc-201ENSMUST00000002303 1202 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Nkx3-2P97503 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Nkx3-2P97503 Kbtbd11-201ENSMUST00000069399 6973 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Nkx3-2P97503 Ube2j2-201ENSMUST00000024056 3483 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Nkx3-2P97503 Fbrsl1-201ENSMUST00000056124 2700 ntTSL 2 BASIC15.2■□□□□ 0.02
Nkx3-2P97503 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Nkx3-2P97503 Gm45203-201ENSMUST00000206384 1831 ntBASIC15.2■□□□□ 0.02
Nkx3-2P97503 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Nkx3-2P97503 Fzd5-201ENSMUST00000063982 6915 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Nkx3-2P97503 Celf1-201ENSMUST00000005643 4830 ntAPPRIS P4 TSL 5 BASIC15.19■□□□□ 0.02
Nkx3-2P97503 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nkx3-2P97503 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nkx3-2P97503 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nkx3-2P97503 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nkx3-2P97503 Gm14026-201ENSMUST00000120625 1789 ntBASIC15.19■□□□□ 0.02
Nkx3-2P97503 Hspa1b-201ENSMUST00000172753 2803 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
Nkx3-2P97503 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nkx3-2P97503 Zfp786-201ENSMUST00000058844 3191 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nkx3-2P97503 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nkx3-2P97503 Rai1-201ENSMUST00000064190 7348 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nkx3-2P97503 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Nkx3-2P97503 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nkx3-2P97503 Adam22-201ENSMUST00000046838 2773 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nkx3-2P97503 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nkx3-2P97503 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC15.19■□□□□ 0.02
Nkx3-2P97503 Celf3-208ENSMUST00000198316 2505 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Nkx3-2P97503 Fgfr2-215ENSMUST00000122054 3323 ntAPPRIS P4 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nkx3-2P97503 Pde8b-202ENSMUST00000067082 2598 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
Nkx3-2P97503 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Nkx3-2P97503 Gm6583-201ENSMUST00000051117 2233 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
Nkx3-2P97503 Fam159b-201ENSMUST00000043061 1310 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Nkx3-2P97503 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Nkx3-2P97503 Nagk-201ENSMUST00000037376 1405 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Nkx3-2P97503 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 23.3 ms