Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Lig3P97386 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Lig3P97386 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
Lig3P97386 Chchd4-201ENSMUST00000040835 3472 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Lig3P97386 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Lig3P97386 Naa35-201ENSMUST00000022038 3793 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Lig3P97386 Slc35e4-202ENSMUST00000109995 3063 ntAPPRIS ALT1 TSL 5 BASIC17.56■□□□□ 0.4
Lig3P97386 Slc35e4-201ENSMUST00000051207 3059 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Lig3P97386 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Lig3P97386 Rcc1-203ENSMUST00000105951 2326 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Lig3P97386 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Lig3P97386 Fgf2-208ENSMUST00000200585 5973 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Lig3P97386 Grk6-202ENSMUST00000099482 2169 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Lig3P97386 Ttc13-203ENSMUST00000118134 3277 ntTSL 5 BASIC17.55■□□□□ 0.4
Lig3P97386 Chchd7-205ENSMUST00000120732 711 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Lig3P97386 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC17.55■□□□□ 0.4
Lig3P97386 Stard3nl-209ENSMUST00000221380 1268 ntTSL 5 BASIC17.55■□□□□ 0.4
Lig3P97386 Ifi27l2a-201ENSMUST00000055071 463 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Lig3P97386 Wnt10b-207ENSMUST00000228594 1510 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
Lig3P97386 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Lig3P97386 Pole4-201ENSMUST00000095786 1769 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Lig3P97386 Rbfox3-205ENSMUST00000117731 3084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Lig3P97386 Pde8b-201ENSMUST00000022192 2517 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Lig3P97386 Ptgis-202ENSMUST00000088041 1711 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Lig3P97386 Dcps-202ENSMUST00000119847 1445 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Lig3P97386 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Lig3P97386 Arhgef2-202ENSMUST00000107510 4390 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Lig3P97386 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
Lig3P97386 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Lig3P97386 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Lig3P97386 Lrrc14-202ENSMUST00000127208 4849 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Lig3P97386 Ankle2-206ENSMUST00000197188 4077 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Lig3P97386 Nabp2-204ENSMUST00000166608 979 ntTSL 5 BASIC17.54■□□□□ 0.4
Lig3P97386 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC17.54■□□□□ 0.4
Lig3P97386 Nmu-201ENSMUST00000031146 828 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Lig3P97386 Olfr571-201ENSMUST00000061738 969 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
Lig3P97386 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Lig3P97386 Gm5145-201ENSMUST00000095633 837 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
Lig3P97386 Sgpp1-201ENSMUST00000021450 3323 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Lig3P97386 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Lig3P97386 Eif4g3-205ENSMUST00000105831 6235 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
Lig3P97386 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Lig3P97386 Sesn1-202ENSMUST00000099931 3809 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Lig3P97386 Jade2-202ENSMUST00000109090 6230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Lig3P97386 Adgrl1-205ENSMUST00000132500 5719 ntTSL 5 BASIC17.54■□□□□ 0.4
Lig3P97386 Nrxn1-206ENSMUST00000160800 5683 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Lig3P97386 Mier2-203ENSMUST00000165028 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Lig3P97386 Rflnb-201ENSMUST00000021207 3512 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Lig3P97386 Pacsin2-203ENSMUST00000171436 3693 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
Lig3P97386 Plekhf1-201ENSMUST00000098513 5263 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Lig3P97386 Med7-209ENSMUST00000170928 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Lig3P97386 Atp2b2-201ENSMUST00000089003 7067 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
Lig3P97386 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Lig3P97386 Lrriq3-201ENSMUST00000029833 2652 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Lig3P97386 Prdm12-201ENSMUST00000113470 2471 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
Lig3P97386 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Lig3P97386 Commd6-201ENSMUST00000100339 1090 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
Lig3P97386 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Lig3P97386 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC17.53■□□□□ 0.4
Lig3P97386 Smim4-204ENSMUST00000203261 1219 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Lig3P97386 Ptcra-201ENSMUST00000041012 1283 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Lig3P97386 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Lig3P97386 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Lig3P97386 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Lig3P97386 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Lig3P97386 Fam57b-201ENSMUST00000079423 2328 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Lig3P97386 Ptp4a3-201ENSMUST00000053232 3608 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Lig3P97386 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC17.53■□□□□ 0.4
Lig3P97386 Ubr3-201ENSMUST00000055758 8072 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Lig3P97386 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Lig3P97386 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Lig3P97386 Mapt-202ENSMUST00000106988 2202 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
Lig3P97386 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Lig3P97386 Zfx-201ENSMUST00000088102 7002 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Lig3P97386 Glmn-201ENSMUST00000078021 2015 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Lig3P97386 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Lig3P97386 Zfp384-207ENSMUST00000112427 3072 ntAPPRIS P2 TSL 5 BASIC17.52■□□□□ 0.4
Lig3P97386 Chpf-202ENSMUST00000094818 3065 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Lig3P97386 Knl1-201ENSMUST00000028799 5527 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Lig3P97386 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
Lig3P97386 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Lig3P97386 Park7-203ENSMUST00000105674 937 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
Lig3P97386 Rps27l-203ENSMUST00000127896 575 ntTSL 5 BASIC17.52■□□□□ 0.4
Lig3P97386 A230065H16Rik-201ENSMUST00000150384 670 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Lig3P97386 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Lig3P97386 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Lig3P97386 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC17.52■□□□□ 0.4
Lig3P97386 Arl5b-206ENSMUST00000193836 481 ntTSL 2 BASIC17.52■□□□□ 0.4
Lig3P97386 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Lig3P97386 AC161829.1-201ENSMUST00000220298 281 ntBASIC17.52■□□□□ 0.4
Lig3P97386 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
Lig3P97386 Snrk-201ENSMUST00000118886 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Lig3P97386 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
Lig3P97386 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC17.52■□□□□ 0.39
Lig3P97386 Zdhhc6-209ENSMUST00000225495 1711 ntBASIC17.52■□□□□ 0.39
Lig3P97386 Adgrl1-201ENSMUST00000045393 5643 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
Lig3P97386 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Lig3P97386 Fmnl3-201ENSMUST00000081224 4137 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
Lig3P97386 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
Lig3P97386 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 23.6 ms