Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Cdh11P55288 Nrsn1-204ENSMUST00000167305 1891 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Cdh11P55288 Zmym3-201ENSMUST00000063577 6057 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Cdh11P55288 Nipal3-201ENSMUST00000102549 5153 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
Cdh11P55288 Ace-201ENSMUST00000001963 4906 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Cdh11P55288 Zbtb11-201ENSMUST00000050248 4920 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
Cdh11P55288 Wdr91-201ENSMUST00000081214 2682 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Cdh11P55288 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC14.73□□□□□ -0.05
Cdh11P55288 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC14.73□□□□□ -0.05
Cdh11P55288 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Cdh11P55288 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
Cdh11P55288 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Cdh11P55288 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Cdh11P55288 Gm6728-201ENSMUST00000178117 1065 ntBASIC14.73□□□□□ -0.05
Cdh11P55288 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC14.73□□□□□ -0.05
Cdh11P55288 Il3ra-202ENSMUST00000223589 738 ntBASIC14.73□□□□□ -0.05
Cdh11P55288 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Cdh11P55288 Gm7367-201ENSMUST00000057611 492 ntBASIC14.73□□□□□ -0.05
Cdh11P55288 Prss27-201ENSMUST00000059482 1253 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Cdh11P55288 Lamc1-201ENSMUST00000027752 7622 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Cdh11P55288 Sec31a-201ENSMUST00000094578 4228 ntAPPRIS P2 TSL 5 BASIC14.73□□□□□ -0.05
Cdh11P55288 Sh2b1-201ENSMUST00000032978 3393 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
Cdh11P55288 Trappc5-201ENSMUST00000044857 2546 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Cdh11P55288 Rint1-205ENSMUST00000120869 1886 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Cdh11P55288 Hist1h2ac-201ENSMUST00000171127 2482 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
Cdh11P55288 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Cdh11P55288 Snx8-201ENSMUST00000031539 2627 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Cdh11P55288 Kbtbd2-202ENSMUST00000114323 3816 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Cdh11P55288 Zswim4-201ENSMUST00000039480 4625 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Cdh11P55288 Zfand6-208ENSMUST00000209117 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Cdh11P55288 Sfrp4-201ENSMUST00000002883 1764 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Cdh11P55288 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Cdh11P55288 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC14.72□□□□□ -0.05
Cdh11P55288 C2cd2-201ENSMUST00000170757 6555 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Cdh11P55288 Rhbg-201ENSMUST00000171887 1937 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Cdh11P55288 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Cdh11P55288 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Cdh11P55288 C130074G19Rik-201ENSMUST00000048308 3035 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Cdh11P55288 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Cdh11P55288 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Cdh11P55288 Gm26781-201ENSMUST00000181385 1477 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Cdh11P55288 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
Cdh11P55288 Lyzl4-202ENSMUST00000120918 959 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Cdh11P55288 Gm5577-203ENSMUST00000153372 815 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Cdh11P55288 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Cdh11P55288 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Cdh11P55288 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Cdh11P55288 Anks1b-214ENSMUST00000182356 7561 ntTSL 5 BASIC14.72□□□□□ -0.05
Cdh11P55288 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC14.72□□□□□ -0.05
Cdh11P55288 Anks6-201ENSMUST00000084616 3552 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
Cdh11P55288 Csnk1e-201ENSMUST00000117786 2694 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Cdh11P55288 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Cdh11P55288 Pi4k2b-202ENSMUST00000031082 3034 ntAPPRIS ALT2 TSL 2 BASIC14.72□□□□□ -0.05
Cdh11P55288 Gm45723-201ENSMUST00000212135 1783 ntTSL 5 BASIC14.72□□□□□ -0.05
Cdh11P55288 Lgr6-202ENSMUST00000137968 2820 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Cdh11P55288 Tgfbr2-202ENSMUST00000061101 8092 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Cdh11P55288 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC14.72□□□□□ -0.05
Cdh11P55288 Dap-201ENSMUST00000044524 1555 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Cdh11P55288 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Cdh11P55288 Dpagt1-201ENSMUST00000054708 2205 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Cdh11P55288 Rnf170-209ENSMUST00000209300 1881 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Cdh11P55288 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Cdh11P55288 Casp3-201ENSMUST00000093517 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Cdh11P55288 Taok3-202ENSMUST00000111975 2172 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Cdh11P55288 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Cdh11P55288 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
Cdh11P55288 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Cdh11P55288 Igfbp2-201ENSMUST00000047328 1307 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Cdh11P55288 A4galt-202ENSMUST00000164614 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Cdh11P55288 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Cdh11P55288 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Cdh11P55288 Syn1-201ENSMUST00000081893 3209 ntAPPRIS P4 TSL 5 BASIC14.71□□□□□ -0.05
Cdh11P55288 Foxo3-201ENSMUST00000056974 2889 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Cdh11P55288 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Cdh11P55288 Dusp13-213ENSMUST00000184703 902 ntAPPRIS ALT1 TSL 5 BASIC14.71□□□□□ -0.05
Cdh11P55288 Ttc32-203ENSMUST00000219488 768 ntTSL 3 BASIC14.71□□□□□ -0.05
Cdh11P55288 AC120002.2-201ENSMUST00000220205 773 ntBASIC14.71□□□□□ -0.05
Cdh11P55288 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
Cdh11P55288 Hint2-201ENSMUST00000030192 610 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Cdh11P55288 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC14.71□□□□□ -0.05
Cdh11P55288 Pdcd2-201ENSMUST00000054450 1120 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Cdh11P55288 Dnajb11-204ENSMUST00000166487 2534 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Cdh11P55288 Stx6-201ENSMUST00000027743 4589 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Cdh11P55288 Dera-201ENSMUST00000087675 1729 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Cdh11P55288 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Cdh11P55288 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.06
Cdh11P55288 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC14.71□□□□□ -0.06
Cdh11P55288 Zc3h14-204ENSMUST00000110105 3514 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Cdh11P55288 Ptpa-201ENSMUST00000042055 2586 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Cdh11P55288 Fam81a-201ENSMUST00000034749 3703 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Cdh11P55288 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Cdh11P55288 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Cdh11P55288 Mon1b-201ENSMUST00000035777 4998 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Cdh11P55288 Degs1-201ENSMUST00000035295 2048 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Cdh11P55288 Chd3-201ENSMUST00000092971 6066 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
Cdh11P55288 Fgf11-202ENSMUST00000102585 3039 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Cdh11P55288 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Cdh11P55288 Nr2e1-201ENSMUST00000019938 3285 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Cdh11P55288 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Cdh11P55288 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Retrieved 100 of 76,532 protein–RNA pairs in 34.5 ms