Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
Sox3P53784 Sptbn4-202ENSMUST00000108362 4861 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Sox3P53784 Iars2-201ENSMUST00000027921 5471 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Sox3P53784 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Sox3P53784 Ptgis-202ENSMUST00000088041 1711 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Sox3P53784 Tmem183a-201ENSMUST00000049470 3149 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Sox3P53784 Gm7935-201ENSMUST00000100555 1278 ntBASIC15.41■□□□□ 0.06
Sox3P53784 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC15.41■□□□□ 0.06
Sox3P53784 Nrn1l-202ENSMUST00000118920 603 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Sox3P53784 Ccl27a-217ENSMUST00000155240 343 ntTSL 2 BASIC15.41■□□□□ 0.06
Sox3P53784 Timm23-206ENSMUST00000170331 777 ntTSL 3 BASIC15.41■□□□□ 0.06
Sox3P53784 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC15.41■□□□□ 0.06
Sox3P53784 Gm5364-201ENSMUST00000216789 889 ntBASIC15.41■□□□□ 0.06
Sox3P53784 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Sox3P53784 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Sox3P53784 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Sox3P53784 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Sox3P53784 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC15.41■□□□□ 0.06
Sox3P53784 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC15.41■□□□□ 0.06
Sox3P53784 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Sox3P53784 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC15.41■□□□□ 0.06
Sox3P53784 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
Sox3P53784 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Sox3P53784 Mpig6b-201ENSMUST00000097337 2252 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Sox3P53784 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Sox3P53784 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
Sox3P53784 4930474N05Rik-203ENSMUST00000226305 2313 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
Sox3P53784 Adnp2-201ENSMUST00000066743 5012 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Sox3P53784 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Sox3P53784 Tmem150b-202ENSMUST00000086364 2822 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Sox3P53784 Zfp384-207ENSMUST00000112427 3072 ntAPPRIS P2 TSL 5 BASIC15.4■□□□□ 0.06
Sox3P53784 Fam199x-201ENSMUST00000047852 8299 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Sox3P53784 Simc1-202ENSMUST00000121401 4819 ntAPPRIS P2 TSL 5 BASIC15.4■□□□□ 0.06
Sox3P53784 Lrrc14-202ENSMUST00000127208 4849 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Sox3P53784 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Sox3P53784 Gm17509-201ENSMUST00000165680 2375 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
Sox3P53784 Sh3glb1-202ENSMUST00000198254 5945 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Sox3P53784 Apoa5-202ENSMUST00000121598 2515 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Sox3P53784 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Sox3P53784 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Sox3P53784 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Sox3P53784 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC15.4■□□□□ 0.06
Sox3P53784 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC15.4■□□□□ 0.06
Sox3P53784 Gm12644-201ENSMUST00000119935 606 ntBASIC15.4■□□□□ 0.06
Sox3P53784 Gm12350-201ENSMUST00000121208 462 ntBASIC15.4■□□□□ 0.06
Sox3P53784 Btf3-204ENSMUST00000134542 780 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
Sox3P53784 1190007I07Rik-202ENSMUST00000176200 586 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
Sox3P53784 Dynlt1b-201ENSMUST00000179569 768 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Sox3P53784 Gm3764-206ENSMUST00000181356 1088 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Sox3P53784 1190007I07Rik-203ENSMUST00000183363 406 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Sox3P53784 Tac4-201ENSMUST00000021242 1251 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Sox3P53784 Gm6296-201ENSMUST00000222599 943 ntBASIC15.4■□□□□ 0.06
Sox3P53784 1190007I07Rik-201ENSMUST00000079648 716 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Sox3P53784 Ythdf2-201ENSMUST00000085181 955 ntTSL 2 BASIC15.4■□□□□ 0.06
Sox3P53784 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
Sox3P53784 B3gnt4-201ENSMUST00000031384 1423 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
Sox3P53784 Acbd6-201ENSMUST00000035560 5592 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Sox3P53784 Ptprt-201ENSMUST00000109441 6623 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Sox3P53784 Tmem260-201ENSMUST00000111735 5485 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
Sox3P53784 Fkbp14-202ENSMUST00000117375 1830 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Sox3P53784 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Sox3P53784 Fam221a-202ENSMUST00000121903 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Sox3P53784 Actr8-201ENSMUST00000016115 2119 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Sox3P53784 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Sox3P53784 Dpm1-209ENSMUST00000154111 2293 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Sox3P53784 Cbl-204ENSMUST00000205968 2809 ntTSL 1 (best) BASIC15.39■□□□□ 0.06
Sox3P53784 Stox2-208ENSMUST00000211737 4573 ntTSL 1 (best) BASIC15.39■□□□□ 0.06
Sox3P53784 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
Sox3P53784 Chst5-201ENSMUST00000034430 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Sox3P53784 Sox1ot-201ENSMUST00000080795 5064 ntTSL 5 BASIC15.39■□□□□ 0.05
Sox3P53784 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Sox3P53784 Dtd1-201ENSMUST00000028917 1350 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Sox3P53784 Tbp-202ENSMUST00000117593 2067 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Sox3P53784 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
Sox3P53784 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Sox3P53784 Brpf1-203ENSMUST00000113121 4603 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
Sox3P53784 Rad23a-202ENSMUST00000109761 1842 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Sox3P53784 Agap1-204ENSMUST00000190096 4078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Sox3P53784 Ptprj-204ENSMUST00000168621 7634 ntAPPRIS P4 TSL 1 (best) BASIC15.39■□□□□ 0.05
Sox3P53784 Klk12-202ENSMUST00000107970 1115 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
Sox3P53784 Ube2f-201ENSMUST00000059743 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Sox3P53784 Slbp-202ENSMUST00000075670 1027 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Sox3P53784 Luc7l2-208ENSMUST00000161538 4253 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Sox3P53784 Nisch-208ENSMUST00000165981 2415 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Sox3P53784 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Sox3P53784 Cacna1b-204ENSMUST00000102939 9736 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
Sox3P53784 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Sox3P53784 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
Sox3P53784 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
Sox3P53784 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Sox3P53784 Tfeb-204ENSMUST00000113288 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Sox3P53784 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Sox3P53784 Gm23935-201ENSMUST00000102303 57 ntBASIC15.38■□□□□ 0.05
Sox3P53784 Gm24270-201ENSMUST00000102326 57 ntBASIC15.38■□□□□ 0.05
Sox3P53784 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC15.38■□□□□ 0.05
Sox3P53784 Gm24245-201ENSMUST00000157318 57 ntBASIC15.38■□□□□ 0.05
Sox3P53784 Sssca1-203ENSMUST00000159693 705 ntTSL 3 BASIC15.38■□□□□ 0.05
Sox3P53784 Gm26517-201ENSMUST00000181279 1172 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Sox3P53784 Gm2756-201ENSMUST00000195851 400 ntBASIC15.38■□□□□ 0.05
Sox3P53784 Gm6376-201ENSMUST00000209407 580 ntBASIC15.38■□□□□ 0.05
Retrieved 100 of 76,532 protein–RNA pairs in 70.3 ms