Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 AC062016.1-201ENST00000355719 319 ntBASIC4.18□□□□□ -1.74
CCDC9Q9Y3X0 Y_RNA.48-201ENST00000362710 103 ntBASIC4.18□□□□□ -1.74
CCDC9Q9Y3X0 RNU4-79P-201ENST00000362764 141 ntBASIC4.18□□□□□ -1.74
CCDC9Q9Y3X0 RNU4-9P-201ENST00000364951 139 ntBASIC4.18□□□□□ -1.74
CCDC9Q9Y3X0 RNU6-310P-201ENST00000384655 107 ntBASIC4.18□□□□□ -1.74
CCDC9Q9Y3X0 RNU6-331P-201ENST00000384724 107 ntBASIC4.18□□□□□ -1.74
CCDC9Q9Y3X0 Y_RNA.646-201ENST00000410980 101 ntBASIC4.18□□□□□ -1.74
CCDC9Q9Y3X0 HNRNPDLP1-201ENST00000412834 550 ntBASIC4.18□□□□□ -1.74
CCDC9Q9Y3X0 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC4.18□□□□□ -1.74
CCDC9Q9Y3X0 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC4.18□□□□□ -1.74
CCDC9Q9Y3X0 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC4.18□□□□□ -1.74
CCDC9Q9Y3X0 UBE2V1P7-201ENST00000446395 340 ntBASIC4.18□□□□□ -1.74
CCDC9Q9Y3X0 AL109933.2-201ENST00000452651 260 ntBASIC4.18□□□□□ -1.74
CCDC9Q9Y3X0 AC145146.1-201ENST00000496370 254 ntBASIC4.18□□□□□ -1.74
CCDC9Q9Y3X0 AC097473.1-201ENST00000508142 408 ntBASIC4.18□□□□□ -1.74
CCDC9Q9Y3X0 SCARNA16.2-201ENST00000516520 172 ntBASIC4.18□□□□□ -1.74
CCDC9Q9Y3X0 RNA5SP384-201ENST00000516615 116 ntBASIC4.18□□□□□ -1.74
CCDC9Q9Y3X0 RGS4-209ENST00000531057 544 ntTSL 4 BASIC4.18□□□□□ -1.74
CCDC9Q9Y3X0 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC4.18□□□□□ -1.74
CCDC9Q9Y3X0 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC4.18□□□□□ -1.74
CCDC9Q9Y3X0 AL158827.2-201ENST00000602494 330 ntBASIC4.18□□□□□ -1.74
CCDC9Q9Y3X0 AC137590.2-201ENST00000619709 240 ntBASIC4.18□□□□□ -1.74
CCDC9Q9Y3X0 MIR7843-201ENST00000622274 79 ntBASIC4.18□□□□□ -1.74
CCDC9Q9Y3X0 SCARNA4-201ENST00000629045 128 ntBASIC4.18□□□□□ -1.74
CCDC9Q9Y3X0 AL691447.3-201ENST00000635020 330 ntBASIC4.18□□□□□ -1.74
CCDC9Q9Y3X0 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC4.17□□□□□ -1.74
CCDC9Q9Y3X0 Y_RNA.61-201ENST00000362835 102 ntBASIC4.17□□□□□ -1.74
CCDC9Q9Y3X0 RNU6-1159P-201ENST00000362933 107 ntBASIC4.17□□□□□ -1.74
CCDC9Q9Y3X0 RNU5B-2P-201ENST00000363036 113 ntBASIC4.17□□□□□ -1.74
CCDC9Q9Y3X0 DYNLT3P1-201ENST00000378574 347 ntBASIC4.17□□□□□ -1.74
CCDC9Q9Y3X0 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC4.17□□□□□ -1.74
CCDC9Q9Y3X0 AL358453.1-201ENST00000422522 250 ntBASIC4.17□□□□□ -1.74
CCDC9Q9Y3X0 RPL23AP75-201ENST00000491601 451 ntBASIC4.17□□□□□ -1.74
CCDC9Q9Y3X0 AP006245.1-201ENST00000522549 120 ntBASIC4.17□□□□□ -1.74
CCDC9Q9Y3X0 AC023824.2-201ENST00000566185 400 ntBASIC4.17□□□□□ -1.74
CCDC9Q9Y3X0 uc_338.25-201ENST00000613756 156 ntBASIC4.17□□□□□ -1.74
CCDC9Q9Y3X0 AC022149.2-201ENST00000621061 203 ntBASIC4.17□□□□□ -1.74
CCDC9Q9Y3X0 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC4.17□□□□□ -1.74
CCDC9Q9Y3X0 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC4.17□□□□□ -1.74
CCDC9Q9Y3X0 RNU4-15P-201ENST00000362613 141 ntBASIC4.16□□□□□ -1.74
CCDC9Q9Y3X0 SNORD116-29-201ENST00000384516 83 ntBASIC4.16□□□□□ -1.74
CCDC9Q9Y3X0 MIR208B-201ENST00000401172 77 ntBASIC4.16□□□□□ -1.74
CCDC9Q9Y3X0 AC243428.1-201ENST00000421099 264 ntBASIC4.16□□□□□ -1.74
CCDC9Q9Y3X0 AC003685.2-201ENST00000422795 395 ntBASIC4.16□□□□□ -1.74
CCDC9Q9Y3X0 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC4.16□□□□□ -1.74
CCDC9Q9Y3X0 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC4.16□□□□□ -1.74
CCDC9Q9Y3X0 snoU13.6-201ENST00000458785 104 ntBASIC4.16□□□□□ -1.74
CCDC9Q9Y3X0 AC087477.1-201ENST00000465747 340 ntBASIC4.16□□□□□ -1.74
CCDC9Q9Y3X0 AF186996.7-201ENST00000492781 209 ntBASIC4.16□□□□□ -1.74
CCDC9Q9Y3X0 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC4.16□□□□□ -1.74
CCDC9Q9Y3X0 RNU4ATAC15P-201ENST00000516415 126 ntBASIC4.16□□□□□ -1.74
CCDC9Q9Y3X0 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC4.16□□□□□ -1.74
CCDC9Q9Y3X0 AL355297.2-201ENST00000604792 129 ntBASIC4.16□□□□□ -1.74
CCDC9Q9Y3X0 RPL23AP88-201ENST00000605759 454 ntBASIC4.16□□□□□ -1.74
CCDC9Q9Y3X0 MIR622-201ENST00000638396 96 ntBASIC4.16□□□□□ -1.74
CCDC9Q9Y3X0 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC4.15□□□□□ -1.74
CCDC9Q9Y3X0 MIR22-201ENST00000362190 85 ntBASIC4.15□□□□□ -1.75
CCDC9Q9Y3X0 RNU6-595P-201ENST00000363944 107 ntBASIC4.15□□□□□ -1.75
CCDC9Q9Y3X0 RNA5SP125-201ENST00000364843 120 ntBASIC4.15□□□□□ -1.75
CCDC9Q9Y3X0 SNORD67-201ENST00000390833 111 ntBASIC4.15□□□□□ -1.75
CCDC9Q9Y3X0 RPL21P75-201ENST00000396599 483 ntBASIC4.15□□□□□ -1.75
CCDC9Q9Y3X0 RPL21P28-201ENST00000401418 483 ntBASIC4.15□□□□□ -1.75
CCDC9Q9Y3X0 RN7SKP210-201ENST00000459176 261 ntBASIC4.15□□□□□ -1.75
CCDC9Q9Y3X0 RPL21P39-201ENST00000463605 483 ntBASIC4.15□□□□□ -1.75
CCDC9Q9Y3X0 AC087190.1-201ENST00000484462 480 ntBASIC4.15□□□□□ -1.75
CCDC9Q9Y3X0 AC093591.1-201ENST00000491435 481 ntBASIC4.15□□□□□ -1.75
CCDC9Q9Y3X0 RPL21P16-201ENST00000495531 483 ntBASIC4.15□□□□□ -1.75
CCDC9Q9Y3X0 SCGB1D5P-201ENST00000515134 247 ntBASIC4.15□□□□□ -1.75
CCDC9Q9Y3X0 AC107934.2-201ENST00000518653 310 ntBASIC4.15□□□□□ -1.75
CCDC9Q9Y3X0 AL590705.4-201ENST00000532209 134 ntBASIC4.15□□□□□ -1.75
CCDC9Q9Y3X0 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC4.15□□□□□ -1.75
CCDC9Q9Y3X0 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC4.15□□□□□ -1.75
CCDC9Q9Y3X0 AL627309.6-201ENST00000606857 840 ntBASIC4.15□□□□□ -1.75
CCDC9Q9Y3X0 MESTIT1_1.1-201ENST00000618871 140 ntBASIC4.15□□□□□ -1.75
CCDC9Q9Y3X0 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC4.15□□□□□ -1.75
CCDC9Q9Y3X0 MIR7153-201ENST00000637758 57 ntBASIC4.15□□□□□ -1.75
CCDC9Q9Y3X0 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
CCDC9Q9Y3X0 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
CCDC9Q9Y3X0 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC4.15□□□□□ -1.75
CCDC9Q9Y3X0 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC4.15□□□□□ -1.75
CCDC9Q9Y3X0 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC4.15□□□□□ -1.75
CCDC9Q9Y3X0 RNU6-1274P-201ENST00000384557 107 ntBASIC4.14□□□□□ -1.75
CCDC9Q9Y3X0 SNORA75.6-201ENST00000391318 127 ntBASIC4.14□□□□□ -1.75
CCDC9Q9Y3X0 AL356968.1-201ENST00000416622 474 ntBASIC4.14□□□□□ -1.75
CCDC9Q9Y3X0 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC4.14□□□□□ -1.75
CCDC9Q9Y3X0 AL353997.1-201ENST00000432936 108 ntBASIC4.14□□□□□ -1.75
CCDC9Q9Y3X0 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC4.14□□□□□ -1.75
CCDC9Q9Y3X0 RPPH1-2P-201ENST00000516688 293 ntBASIC4.14□□□□□ -1.75
CCDC9Q9Y3X0 RNU6-264P-201ENST00000517134 104 ntBASIC4.14□□□□□ -1.75
CCDC9Q9Y3X0 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC4.14□□□□□ -1.75
CCDC9Q9Y3X0 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC4.14□□□□□ -1.75
CCDC9Q9Y3X0 MIR4738-201ENST00000579134 87 ntBASIC4.14□□□□□ -1.75
CCDC9Q9Y3X0 AC023043.3-201ENST00000593113 385 ntBASIC4.14□□□□□ -1.75
CCDC9Q9Y3X0 AC092608.2-201ENST00000624427 218 ntBASIC4.14□□□□□ -1.75
CCDC9Q9Y3X0 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC4.14□□□□□ -1.75
CCDC9Q9Y3X0 AC099654.10-201ENST00000640395 161 ntBASIC4.14□□□□□ -1.75
CCDC9Q9Y3X0 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
CCDC9Q9Y3X0 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC4.13□□□□□ -1.75
CCDC9Q9Y3X0 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
CCDC9Q9Y3X0 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 84.7 ms