Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC4.56□□□□□ -1.68
CHMP3Q9Y3E7 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
CHMP3Q9Y3E7 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC4.55□□□□□ -1.68
CHMP3Q9Y3E7 MIR208A-201ENST00000362287 71 ntBASIC4.55□□□□□ -1.68
CHMP3Q9Y3E7 RNU4-80P-201ENST00000363200 141 ntBASIC4.55□□□□□ -1.68
CHMP3Q9Y3E7 RNU6-137P-201ENST00000363680 108 ntBASIC4.55□□□□□ -1.68
CHMP3Q9Y3E7 SNORD115-8-201ENST00000363856 82 ntBASIC4.55□□□□□ -1.68
CHMP3Q9Y3E7 RNU6-1141P-201ENST00000364520 107 ntBASIC4.55□□□□□ -1.68
CHMP3Q9Y3E7 SNORD115-38-201ENST00000365037 82 ntBASIC4.55□□□□□ -1.68
CHMP3Q9Y3E7 SNORD50.2-201ENST00000365465 70 ntBASIC4.55□□□□□ -1.68
CHMP3Q9Y3E7 RNU1-89P-201ENST00000384592 164 ntBASIC4.55□□□□□ -1.68
CHMP3Q9Y3E7 RPL23AP36-201ENST00000413895 458 ntBASIC4.55□□□□□ -1.68
CHMP3Q9Y3E7 CRYBB2P1-203ENST00000415709 538 ntBASIC4.55□□□□□ -1.68
CHMP3Q9Y3E7 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC4.55□□□□□ -1.68
CHMP3Q9Y3E7 DCLRE1CP1-201ENST00000454630 470 ntBASIC4.55□□□□□ -1.68
CHMP3Q9Y3E7 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC4.55□□□□□ -1.68
CHMP3Q9Y3E7 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC4.55□□□□□ -1.68
CHMP3Q9Y3E7 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC4.55□□□□□ -1.68
CHMP3Q9Y3E7 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC4.55□□□□□ -1.68
CHMP3Q9Y3E7 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC4.55□□□□□ -1.68
CHMP3Q9Y3E7 AL138963.2-201ENST00000605137 226 ntBASIC4.55□□□□□ -1.68
CHMP3Q9Y3E7 AC022441.3-201ENST00000605737 136 ntBASIC4.55□□□□□ -1.68
CHMP3Q9Y3E7 AC010999.1-201ENST00000611856 324 ntBASIC4.55□□□□□ -1.68
CHMP3Q9Y3E7 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC4.55□□□□□ -1.68
CHMP3Q9Y3E7 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC4.55□□□□□ -1.68
CHMP3Q9Y3E7 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
CHMP3Q9Y3E7 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC4.55□□□□□ -1.68
CHMP3Q9Y3E7 ZNF204P-201ENST00000416749 2397 ntBASIC4.55□□□□□ -1.68
CHMP3Q9Y3E7 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC4.55□□□□□ -1.68
CHMP3Q9Y3E7 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
CHMP3Q9Y3E7 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC4.54□□□□□ -1.68
CHMP3Q9Y3E7 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC4.54□□□□□ -1.68
CHMP3Q9Y3E7 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
CHMP3Q9Y3E7 USP33-201ENST00000357428 4155 ntTSL 5 BASIC4.54□□□□□ -1.68
CHMP3Q9Y3E7 AL133383.2-201ENST00000622958 2336 ntBASIC4.54□□□□□ -1.68
CHMP3Q9Y3E7 DLEU2_6.3-201ENST00000340052 136 ntBASIC4.54□□□□□ -1.68
CHMP3Q9Y3E7 Y_RNA.101-201ENST00000363154 102 ntBASIC4.54□□□□□ -1.68
CHMP3Q9Y3E7 RNU6-1285P-201ENST00000363480 105 ntBASIC4.54□□□□□ -1.68
CHMP3Q9Y3E7 RNA5SP387-201ENST00000364226 106 ntBASIC4.54□□□□□ -1.68
CHMP3Q9Y3E7 RNA5SP189-201ENST00000364920 115 ntBASIC4.54□□□□□ -1.68
CHMP3Q9Y3E7 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC4.54□□□□□ -1.68
CHMP3Q9Y3E7 RPL30P12-201ENST00000474666 353 ntBASIC4.54□□□□□ -1.68
CHMP3Q9Y3E7 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC4.54□□□□□ -1.68
CHMP3Q9Y3E7 AP001485.1-201ENST00000604799 199 ntBASIC4.54□□□□□ -1.68
CHMP3Q9Y3E7 MIR486-1-201ENST00000612171 68 ntBASIC4.54□□□□□ -1.68
CHMP3Q9Y3E7 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC4.54□□□□□ -1.68
CHMP3Q9Y3E7 DLEU2_6.2-201ENST00000620994 136 ntBASIC4.54□□□□□ -1.68
CHMP3Q9Y3E7 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC4.54□□□□□ -1.68
CHMP3Q9Y3E7 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC4.54□□□□□ -1.68
CHMP3Q9Y3E7 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC4.53□□□□□ -1.68
CHMP3Q9Y3E7 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
CHMP3Q9Y3E7 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC4.53□□□□□ -1.68
CHMP3Q9Y3E7 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
CHMP3Q9Y3E7 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
CHMP3Q9Y3E7 RNA5SP322-201ENST00000363617 119 ntBASIC4.53□□□□□ -1.68
CHMP3Q9Y3E7 RNU6-1130P-201ENST00000365434 107 ntBASIC4.53□□□□□ -1.68
CHMP3Q9Y3E7 SNORA70.4-201ENST00000365509 134 ntBASIC4.53□□□□□ -1.68
CHMP3Q9Y3E7 RNU6-81P-201ENST00000365608 104 ntBASIC4.53□□□□□ -1.68
CHMP3Q9Y3E7 Y_RNA.435-201ENST00000384095 112 ntBASIC4.53□□□□□ -1.68
CHMP3Q9Y3E7 MIR1183-201ENST00000408856 89 ntBASIC4.53□□□□□ -1.68
CHMP3Q9Y3E7 Y_RNA.595-201ENST00000410403 105 ntBASIC4.53□□□□□ -1.68
CHMP3Q9Y3E7 RN7SKP61-201ENST00000410642 295 ntBASIC4.53□□□□□ -1.68
CHMP3Q9Y3E7 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC4.53□□□□□ -1.68
CHMP3Q9Y3E7 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC4.53□□□□□ -1.68
CHMP3Q9Y3E7 AC005042.3-201ENST00000453230 174 ntBASIC4.53□□□□□ -1.68
CHMP3Q9Y3E7 AC110768.1-201ENST00000509222 400 ntBASIC4.53□□□□□ -1.68
CHMP3Q9Y3E7 snoU18.1-201ENST00000629629 71 ntBASIC4.53□□□□□ -1.68
CHMP3Q9Y3E7 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
CHMP3Q9Y3E7 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC4.53□□□□□ -1.69
CHMP3Q9Y3E7 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC4.52□□□□□ -1.69
CHMP3Q9Y3E7 RBBP8P1-201ENST00000449447 1844 ntBASIC4.52□□□□□ -1.69
CHMP3Q9Y3E7 RNU4-56P-201ENST00000364700 142 ntBASIC4.52□□□□□ -1.69
CHMP3Q9Y3E7 RNU6-1280P-201ENST00000365211 107 ntBASIC4.52□□□□□ -1.69
CHMP3Q9Y3E7 RNU6-211P-201ENST00000384047 107 ntBASIC4.52□□□□□ -1.69
CHMP3Q9Y3E7 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC4.52□□□□□ -1.69
CHMP3Q9Y3E7 HSPE1P26-201ENST00000405341 275 ntBASIC4.52□□□□□ -1.69
CHMP3Q9Y3E7 DBIP2-201ENST00000419076 262 ntBASIC4.52□□□□□ -1.69
CHMP3Q9Y3E7 AC112220.1-201ENST00000434628 355 ntBASIC4.52□□□□□ -1.69
CHMP3Q9Y3E7 NDUFB1P1-201ENST00000435191 180 ntBASIC4.52□□□□□ -1.69
CHMP3Q9Y3E7 RPS15AP5-201ENST00000436276 388 ntBASIC4.52□□□□□ -1.69
CHMP3Q9Y3E7 AC244670.1-201ENST00000436879 112 ntBASIC4.52□□□□□ -1.69
CHMP3Q9Y3E7 CYCSP35-201ENST00000451978 304 ntBASIC4.52□□□□□ -1.69
CHMP3Q9Y3E7 snoU13.22-201ENST00000459428 104 ntBASIC4.52□□□□□ -1.69
CHMP3Q9Y3E7 RN7SL293P-201ENST00000481765 281 ntBASIC4.52□□□□□ -1.69
CHMP3Q9Y3E7 HMGB3P3-201ENST00000510526 400 ntBASIC4.52□□□□□ -1.69
CHMP3Q9Y3E7 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC4.52□□□□□ -1.69
CHMP3Q9Y3E7 SNORA70.14-201ENST00000516205 110 ntBASIC4.52□□□□□ -1.69
CHMP3Q9Y3E7 SNORA31.16-201ENST00000516773 139 ntBASIC4.52□□□□□ -1.69
CHMP3Q9Y3E7 RNU6-928P-201ENST00000516876 104 ntBASIC4.52□□□□□ -1.69
CHMP3Q9Y3E7 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC4.52□□□□□ -1.69
CHMP3Q9Y3E7 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC4.52□□□□□ -1.69
CHMP3Q9Y3E7 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
CHMP3Q9Y3E7 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC4.52□□□□□ -1.69
CHMP3Q9Y3E7 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
CHMP3Q9Y3E7 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC4.52□□□□□ -1.69
CHMP3Q9Y3E7 FAM35DP-201ENST00000323387 2712 ntBASIC4.52□□□□□ -1.69
CHMP3Q9Y3E7 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC4.51□□□□□ -1.69
CHMP3Q9Y3E7 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC4.51□□□□□ -1.69
CHMP3Q9Y3E7 RNU6-653P-201ENST00000363074 106 ntBASIC4.51□□□□□ -1.69
CHMP3Q9Y3E7 SNORA72.2-201ENST00000365028 127 ntBASIC4.51□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 108.4 ms