Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 RPL30P1-201ENST00000488676 339 ntBASIC2.32□□□□□ -2.04
CPSF3Q9UKF6 RPS29P21-201ENST00000496272 170 ntBASIC2.32□□□□□ -2.04
CPSF3Q9UKF6 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC2.32□□□□□ -2.04
CPSF3Q9UKF6 RNU7-193P-201ENST00000516723 65 ntBASIC2.32□□□□□ -2.04
CPSF3Q9UKF6 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.32□□□□□ -2.04
CPSF3Q9UKF6 IMMP1LP2-201ENST00000552954 492 ntBASIC2.32□□□□□ -2.04
CPSF3Q9UKF6 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC2.32□□□□□ -2.04
CPSF3Q9UKF6 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.32□□□□□ -2.04
CPSF3Q9UKF6 AC122108.2-201ENST00000611946 526 ntBASIC2.32□□□□□ -2.04
CPSF3Q9UKF6 AC084782.3-201ENST00000612282 578 ntBASIC2.32□□□□□ -2.04
CPSF3Q9UKF6 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC2.32□□□□□ -2.04
CPSF3Q9UKF6 AC008121.3-201ENST00000618726 433 ntBASIC2.32□□□□□ -2.04
CPSF3Q9UKF6 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.31□□□□□ -2.04
CPSF3Q9UKF6 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
CPSF3Q9UKF6 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.31□□□□□ -2.04
CPSF3Q9UKF6 SNORA67.3-201ENST00000384366 140 ntBASIC2.31□□□□□ -2.04
CPSF3Q9UKF6 MIR450B-201ENST00000401182 78 ntBASIC2.31□□□□□ -2.04
CPSF3Q9UKF6 AL355497.1-201ENST00000406262 551 ntBASIC2.31□□□□□ -2.04
CPSF3Q9UKF6 RN7SKP32-201ENST00000410167 303 ntBASIC2.31□□□□□ -2.04
CPSF3Q9UKF6 NDUFA5P4-201ENST00000436704 385 ntBASIC2.31□□□□□ -2.04
CPSF3Q9UKF6 AC009238.1-201ENST00000442165 424 ntBASIC2.31□□□□□ -2.04
CPSF3Q9UKF6 AC009237.6-201ENST00000446969 424 ntBASIC2.31□□□□□ -2.04
CPSF3Q9UKF6 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.31□□□□□ -2.04
CPSF3Q9UKF6 SNRPGP7-201ENST00000469016 106 ntBASIC2.31□□□□□ -2.04
CPSF3Q9UKF6 AC104435.1-201ENST00000483483 166 ntBASIC2.31□□□□□ -2.04
CPSF3Q9UKF6 FAM206BP-201ENST00000510179 541 ntBASIC2.31□□□□□ -2.04
CPSF3Q9UKF6 AC092436.3-201ENST00000511788 257 ntBASIC2.31□□□□□ -2.04
CPSF3Q9UKF6 RNU6-1332P-201ENST00000516666 104 ntBASIC2.31□□□□□ -2.04
CPSF3Q9UKF6 SNORA31.25-201ENST00000517242 134 ntBASIC2.31□□□□□ -2.04
CPSF3Q9UKF6 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC2.31□□□□□ -2.04
CPSF3Q9UKF6 TRAV32-201ENST00000553993 340 ntBASIC2.31□□□□□ -2.04
CPSF3Q9UKF6 MIR5002-201ENST00000584713 97 ntBASIC2.31□□□□□ -2.04
CPSF3Q9UKF6 AC078899.2-201ENST00000595282 212 ntBASIC2.31□□□□□ -2.04
CPSF3Q9UKF6 AP003465.2-201ENST00000602571 373 ntBASIC2.31□□□□□ -2.04
CPSF3Q9UKF6 AP000907.4-201ENST00000604143 237 ntBASIC2.31□□□□□ -2.04
CPSF3Q9UKF6 AP001836.1-201ENST00000604675 523 ntBASIC2.31□□□□□ -2.04
CPSF3Q9UKF6 AC068944.2-201ENST00000610373 403 ntBASIC2.31□□□□□ -2.04
CPSF3Q9UKF6 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.31□□□□□ -2.04
CPSF3Q9UKF6 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
CPSF3Q9UKF6 RNU6-1252P-201ENST00000363054 104 ntBASIC2.3□□□□□ -2.04
CPSF3Q9UKF6 RNU1-23P-201ENST00000363361 144 ntBASIC2.3□□□□□ -2.04
CPSF3Q9UKF6 RNU6-1274P-201ENST00000384557 107 ntBASIC2.3□□□□□ -2.04
CPSF3Q9UKF6 MIR561-201ENST00000385216 97 ntBASIC2.3□□□□□ -2.04
CPSF3Q9UKF6 RNU6-1148P-201ENST00000410992 104 ntBASIC2.3□□□□□ -2.04
CPSF3Q9UKF6 RNU6-373P-201ENST00000411247 98 ntBASIC2.3□□□□□ -2.04
CPSF3Q9UKF6 OOSP1P1-201ENST00000423265 274 ntBASIC2.3□□□□□ -2.04
CPSF3Q9UKF6 RPS15AP10-201ENST00000432472 382 ntBASIC2.3□□□□□ -2.04
CPSF3Q9UKF6 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC2.3□□□□□ -2.04
CPSF3Q9UKF6 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC2.3□□□□□ -2.04
CPSF3Q9UKF6 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC2.3□□□□□ -2.04
CPSF3Q9UKF6 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC2.3□□□□□ -2.04
CPSF3Q9UKF6 AC091874.1-201ENST00000511402 339 ntBASIC2.3□□□□□ -2.04
CPSF3Q9UKF6 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC2.3□□□□□ -2.04
CPSF3Q9UKF6 RNU5F-2P-201ENST00000516066 82 ntBASIC2.3□□□□□ -2.04
CPSF3Q9UKF6 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC2.3□□□□□ -2.04
CPSF3Q9UKF6 MIR219B-201ENST00000637023 88 ntBASIC2.3□□□□□ -2.04
CPSF3Q9UKF6 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.3□□□□□ -2.04
CPSF3Q9UKF6 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.3□□□□□ -2.04
CPSF3Q9UKF6 MTND4P23-201ENST00000447723 1363 ntBASIC2.29□□□□□ -2.04
CPSF3Q9UKF6 MIRLET7G-201ENST00000362280 84 ntBASIC2.29□□□□□ -2.04
CPSF3Q9UKF6 snoU2_19.1-201ENST00000362361 80 ntBASIC2.29□□□□□ -2.04
CPSF3Q9UKF6 RNU6-1141P-201ENST00000364520 107 ntBASIC2.29□□□□□ -2.04
CPSF3Q9UKF6 Y_RNA.530-201ENST00000384587 101 ntBASIC2.29□□□□□ -2.04
CPSF3Q9UKF6 AL079342.1-201ENST00000401460 267 ntBASIC2.29□□□□□ -2.04
CPSF3Q9UKF6 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC2.29□□□□□ -2.04
CPSF3Q9UKF6 EDDM3CP-201ENST00000415977 425 ntBASIC2.29□□□□□ -2.04
CPSF3Q9UKF6 AL513185.2-201ENST00000425543 193 ntBASIC2.29□□□□□ -2.04
CPSF3Q9UKF6 RPL23AP95-201ENST00000426806 265 ntBASIC2.29□□□□□ -2.04
CPSF3Q9UKF6 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC2.29□□□□□ -2.04
CPSF3Q9UKF6 RNA5SP137-201ENST00000516833 135 ntBASIC2.29□□□□□ -2.04
CPSF3Q9UKF6 RNU6-586P-201ENST00000517265 104 ntBASIC2.29□□□□□ -2.04
CPSF3Q9UKF6 MTND4LP26-201ENST00000518144 282 ntBASIC2.29□□□□□ -2.04
CPSF3Q9UKF6 AP003033.1-201ENST00000527244 415 ntBASIC2.29□□□□□ -2.04
CPSF3Q9UKF6 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC2.29□□□□□ -2.04
CPSF3Q9UKF6 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.29□□□□□ -2.04
CPSF3Q9UKF6 MIR6840-201ENST00000611937 71 ntBASIC2.29□□□□□ -2.04
CPSF3Q9UKF6 AC090517.3-201ENST00000625170 141 ntBASIC2.29□□□□□ -2.04
CPSF3Q9UKF6 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
CPSF3Q9UKF6 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC2.28□□□□□ -2.04
CPSF3Q9UKF6 SNORD113-7-201ENST00000363762 77 ntBASIC2.28□□□□□ -2.04
CPSF3Q9UKF6 RNA5SP118-201ENST00000410385 109 ntBASIC2.28□□□□□ -2.04
CPSF3Q9UKF6 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC2.28□□□□□ -2.04
CPSF3Q9UKF6 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC2.28□□□□□ -2.04
CPSF3Q9UKF6 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC2.28□□□□□ -2.04
CPSF3Q9UKF6 MTCO3P18-201ENST00000440206 761 ntBASIC2.28□□□□□ -2.04
CPSF3Q9UKF6 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC2.28□□□□□ -2.04
CPSF3Q9UKF6 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC2.28□□□□□ -2.04
CPSF3Q9UKF6 AMD1P1-201ENST00000457220 922 ntBASIC2.28□□□□□ -2.04
CPSF3Q9UKF6 RNU6-1037P-201ENST00000459571 107 ntBASIC2.28□□□□□ -2.04
CPSF3Q9UKF6 AC007547.1-201ENST00000462177 490 ntBASIC2.28□□□□□ -2.04
CPSF3Q9UKF6 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC2.28□□□□□ -2.04
CPSF3Q9UKF6 AC079804.2-201ENST00000490376 200 ntBASIC2.28□□□□□ -2.04
CPSF3Q9UKF6 AC069439.1-201ENST00000494739 167 ntBASIC2.28□□□□□ -2.04
CPSF3Q9UKF6 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC2.28□□□□□ -2.04
CPSF3Q9UKF6 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC2.28□□□□□ -2.04
CPSF3Q9UKF6 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC2.28□□□□□ -2.04
CPSF3Q9UKF6 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2.28□□□□□ -2.04
CPSF3Q9UKF6 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC2.28□□□□□ -2.04
CPSF3Q9UKF6 MIR3126-201ENST00000577443 74 ntBASIC2.28□□□□□ -2.04
CPSF3Q9UKF6 AC100830.2-201ENST00000581636 240 ntBASIC2.28□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 166.9 ms