Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AC087241.2-201ENST00000535801 324 ntBASIC2.26□□□□□ -2.05
CCDC3Q9BQI4 AC016256.1-201ENST00000547971 354 ntBASIC2.26□□□□□ -2.05
CCDC3Q9BQI4 TRAV32-201ENST00000553993 340 ntBASIC2.26□□□□□ -2.05
CCDC3Q9BQI4 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC2.26□□□□□ -2.05
CCDC3Q9BQI4 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC2.26□□□□□ -2.05
CCDC3Q9BQI4 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC2.26□□□□□ -2.05
CCDC3Q9BQI4 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC2.26□□□□□ -2.05
CCDC3Q9BQI4 MTND5P6-201ENST00000422338 1798 ntBASIC2.26□□□□□ -2.05
CCDC3Q9BQI4 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.25□□□□□ -2.05
CCDC3Q9BQI4 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
CCDC3Q9BQI4 RNU6-655P-201ENST00000362858 107 ntBASIC2.25□□□□□ -2.05
CCDC3Q9BQI4 Y_RNA.301-201ENST00000364990 103 ntBASIC2.25□□□□□ -2.05
CCDC3Q9BQI4 RNU6-692P-201ENST00000384496 107 ntBASIC2.25□□□□□ -2.05
CCDC3Q9BQI4 MIR544A-201ENST00000384855 91 ntBASIC2.25□□□□□ -2.05
CCDC3Q9BQI4 SNORA26.3-201ENST00000391119 136 ntBASIC2.25□□□□□ -2.05
CCDC3Q9BQI4 AL030996.1-201ENST00000411430 235 ntBASIC2.25□□□□□ -2.05
CCDC3Q9BQI4 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC2.25□□□□□ -2.05
CCDC3Q9BQI4 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC2.25□□□□□ -2.05
CCDC3Q9BQI4 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC2.25□□□□□ -2.05
CCDC3Q9BQI4 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC2.25□□□□□ -2.05
CCDC3Q9BQI4 U8.21-201ENST00000459536 136 ntBASIC2.25□□□□□ -2.05
CCDC3Q9BQI4 RPS29P27-201ENST00000463711 170 ntBASIC2.25□□□□□ -2.05
CCDC3Q9BQI4 MTCO2P30-201ENST00000503662 364 ntBASIC2.25□□□□□ -2.05
CCDC3Q9BQI4 AC018710.1-201ENST00000506509 158 ntBASIC2.25□□□□□ -2.05
CCDC3Q9BQI4 AC096745.1-201ENST00000509945 370 ntBASIC2.25□□□□□ -2.05
CCDC3Q9BQI4 RNU2-53P-201ENST00000516257 147 ntBASIC2.25□□□□□ -2.05
CCDC3Q9BQI4 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC2.25□□□□□ -2.05
CCDC3Q9BQI4 AC118273.2-201ENST00000532092 465 ntBASIC2.25□□□□□ -2.05
CCDC3Q9BQI4 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC2.25□□□□□ -2.05
CCDC3Q9BQI4 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC2.25□□□□□ -2.05
CCDC3Q9BQI4 AC067747.1-201ENST00000608026 250 ntBASIC2.25□□□□□ -2.05
CCDC3Q9BQI4 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC2.25□□□□□ -2.05
CCDC3Q9BQI4 MIR5739-201ENST00000619803 80 ntBASIC2.25□□□□□ -2.05
CCDC3Q9BQI4 AC009248.2-201ENST00000619826 254 ntBASIC2.25□□□□□ -2.05
CCDC3Q9BQI4 AC099654.14-201ENST00000638599 341 ntBASIC2.25□□□□□ -2.05
CCDC3Q9BQI4 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.25□□□□□ -2.05
CCDC3Q9BQI4 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC2.25□□□□□ -2.05
CCDC3Q9BQI4 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC2.24□□□□□ -2.05
CCDC3Q9BQI4 CASC19-280ENST00000642102 1351 ntBASIC2.24□□□□□ -2.05
CCDC3Q9BQI4 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.24□□□□□ -2.05
CCDC3Q9BQI4 Y_RNA.40-201ENST00000362645 93 ntBASIC2.24□□□□□ -2.05
CCDC3Q9BQI4 RNU6-562P-201ENST00000362731 107 ntBASIC2.24□□□□□ -2.05
CCDC3Q9BQI4 Y_RNA.166-201ENST00000363730 102 ntBASIC2.24□□□□□ -2.05
CCDC3Q9BQI4 RNA5SP240-201ENST00000365355 128 ntBASIC2.24□□□□□ -2.05
CCDC3Q9BQI4 RNU6-43P-201ENST00000384302 107 ntBASIC2.24□□□□□ -2.05
CCDC3Q9BQI4 MIR144-201ENST00000384886 86 ntBASIC2.24□□□□□ -2.05
CCDC3Q9BQI4 MIR218-1-201ENST00000384999 110 ntBASIC2.24□□□□□ -2.05
CCDC3Q9BQI4 MT-TL1-201ENST00000386347 75 ntBASIC2.24□□□□□ -2.05
CCDC3Q9BQI4 MTND4LP16-201ENST00000440828 295 ntBASIC2.24□□□□□ -2.05
CCDC3Q9BQI4 AL031659.1-201ENST00000447075 539 ntBASIC2.24□□□□□ -2.05
CCDC3Q9BQI4 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC2.24□□□□□ -2.05
CCDC3Q9BQI4 CYP2C59P-201ENST00000457790 269 ntBASIC2.24□□□□□ -2.05
CCDC3Q9BQI4 AC025465.4-201ENST00000513422 638 ntBASIC2.24□□□□□ -2.05
CCDC3Q9BQI4 LIAS-206ENST00000513731 826 ntTSL 5 BASIC2.24□□□□□ -2.05
CCDC3Q9BQI4 AC026464.5-201ENST00000562497 722 ntBASIC2.24□□□□□ -2.05
CCDC3Q9BQI4 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.24□□□□□ -2.05
CCDC3Q9BQI4 MIR4801-201ENST00000582704 82 ntBASIC2.24□□□□□ -2.05
CCDC3Q9BQI4 MIR3136-201ENST00000583498 78 ntBASIC2.24□□□□□ -2.05
CCDC3Q9BQI4 AC011712.1-201ENST00000588959 234 ntBASIC2.24□□□□□ -2.05
CCDC3Q9BQI4 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC2.24□□□□□ -2.05
CCDC3Q9BQI4 AC018889.1-201ENST00000605372 397 ntBASIC2.24□□□□□ -2.05
CCDC3Q9BQI4 AC009233.1-201ENST00000616477 371 ntBASIC2.24□□□□□ -2.05
CCDC3Q9BQI4 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
CCDC3Q9BQI4 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
CCDC3Q9BQI4 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
CCDC3Q9BQI4 AC092268.1-201ENST00000342691 405 ntBASIC2.23□□□□□ -2.05
CCDC3Q9BQI4 RNU6-227P-201ENST00000362865 103 ntBASIC2.23□□□□□ -2.05
CCDC3Q9BQI4 MIR1289-2-201ENST00000408360 111 ntBASIC2.23□□□□□ -2.05
CCDC3Q9BQI4 RNU6-1140P-201ENST00000410517 106 ntBASIC2.23□□□□□ -2.05
CCDC3Q9BQI4 MTND3P8-201ENST00000412909 339 ntBASIC2.23□□□□□ -2.05
CCDC3Q9BQI4 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC2.23□□□□□ -2.05
CCDC3Q9BQI4 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC2.23□□□□□ -2.05
CCDC3Q9BQI4 AC073901.1-201ENST00000462471 408 ntBASIC2.23□□□□□ -2.05
CCDC3Q9BQI4 RPL9P9-202ENST00000466501 579 ntBASIC2.23□□□□□ -2.05
CCDC3Q9BQI4 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC2.23□□□□□ -2.05
CCDC3Q9BQI4 HMGB3P3-201ENST00000510526 400 ntBASIC2.23□□□□□ -2.05
CCDC3Q9BQI4 RNA5SP82-201ENST00000516707 92 ntBASIC2.23□□□□□ -2.05
CCDC3Q9BQI4 RNU6-612P-201ENST00000516909 102 ntBASIC2.23□□□□□ -2.05
CCDC3Q9BQI4 AC107953.1-201ENST00000522216 297 ntBASIC2.23□□□□□ -2.05
CCDC3Q9BQI4 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC2.23□□□□□ -2.05
CCDC3Q9BQI4 MYL12BP1-201ENST00000569826 507 ntBASIC2.23□□□□□ -2.05
CCDC3Q9BQI4 MIR5007-201ENST00000583098 95 ntBASIC2.23□□□□□ -2.05
CCDC3Q9BQI4 MIR4769-201ENST00000584126 77 ntBASIC2.23□□□□□ -2.05
CCDC3Q9BQI4 MIR3942-201ENST00000585264 109 ntBASIC2.23□□□□□ -2.05
CCDC3Q9BQI4 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC2.23□□□□□ -2.05
CCDC3Q9BQI4 RPL30P11-203ENST00000598995 310 ntBASIC2.23□□□□□ -2.05
CCDC3Q9BQI4 AL133215.3-201ENST00000609801 448 ntBASIC2.23□□□□□ -2.05
CCDC3Q9BQI4 AC093913.1-201ENST00000614178 329 ntBASIC2.23□□□□□ -2.05
CCDC3Q9BQI4 AC022306.2-201ENST00000617563 647 ntBASIC2.23□□□□□ -2.05
CCDC3Q9BQI4 U4atac.1-201ENST00000618345 95 ntBASIC2.23□□□□□ -2.05
CCDC3Q9BQI4 AC097372.5-201ENST00000623665 376 ntBASIC2.23□□□□□ -2.05
CCDC3Q9BQI4 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.23□□□□□ -2.05
CCDC3Q9BQI4 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC2.23□□□□□ -2.05
CCDC3Q9BQI4 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC2.23□□□□□ -2.05
CCDC3Q9BQI4 RNU1-51P-201ENST00000365345 176 ntBASIC2.22□□□□□ -2.05
CCDC3Q9BQI4 RNU6-142P-201ENST00000384019 107 ntBASIC2.22□□□□□ -2.05
CCDC3Q9BQI4 RNU6-95P-201ENST00000384697 107 ntBASIC2.22□□□□□ -2.05
CCDC3Q9BQI4 RN7SKP32-201ENST00000410167 303 ntBASIC2.22□□□□□ -2.05
CCDC3Q9BQI4 AC138393.2-201ENST00000414742 246 ntBASIC2.22□□□□□ -2.05
CCDC3Q9BQI4 MTND1P23-201ENST00000416931 372 ntBASIC2.22□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 127.6 ms