Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC009233.1-201ENST00000616477 371 ntBASIC2.18□□□□□ -2.06
NKX3-1Q99801 AL449363.1-201ENST00000617815 186 ntBASIC2.18□□□□□ -2.06
NKX3-1Q99801 AC007792.1-201ENST00000623023 402 ntBASIC2.18□□□□□ -2.06
NKX3-1Q99801 AC092608.2-201ENST00000624427 218 ntBASIC2.18□□□□□ -2.06
NKX3-1Q99801 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.18□□□□□ -2.06
NKX3-1Q99801 IGHVIII-44-202ENST00000636235 289 ntBASIC2.18□□□□□ -2.06
NKX3-1Q99801 AL450472.1-202ENST00000637286 180 ntBASIC2.18□□□□□ -2.06
NKX3-1Q99801 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2.18□□□□□ -2.06
NKX3-1Q99801 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
NKX3-1Q99801 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
NKX3-1Q99801 AC009541.1-201ENST00000438279 2662 ntBASIC2.17□□□□□ -2.06
NKX3-1Q99801 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC2.17□□□□□ -2.06
NKX3-1Q99801 AC062016.1-201ENST00000355719 319 ntBASIC2.17□□□□□ -2.06
NKX3-1Q99801 Y_RNA.123-201ENST00000363338 102 ntBASIC2.17□□□□□ -2.06
NKX3-1Q99801 U8.8-201ENST00000365399 135 ntBASIC2.17□□□□□ -2.06
NKX3-1Q99801 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC2.17□□□□□ -2.06
NKX3-1Q99801 Y_RNA.474-201ENST00000384341 102 ntBASIC2.17□□□□□ -2.06
NKX3-1Q99801 Y_RNA.504-201ENST00000384481 104 ntBASIC2.17□□□□□ -2.06
NKX3-1Q99801 U6atac.2-201ENST00000408644 118 ntBASIC2.17□□□□□ -2.06
NKX3-1Q99801 RNU6-1304P-201ENST00000411374 106 ntBASIC2.17□□□□□ -2.06
NKX3-1Q99801 RPL23AP95-201ENST00000426806 265 ntBASIC2.17□□□□□ -2.06
NKX3-1Q99801 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC2.17□□□□□ -2.06
NKX3-1Q99801 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC2.17□□□□□ -2.06
NKX3-1Q99801 AC124916.1-201ENST00000444020 547 ntBASIC2.17□□□□□ -2.06
NKX3-1Q99801 U8.21-201ENST00000459536 136 ntBASIC2.17□□□□□ -2.06
NKX3-1Q99801 AC090096.1-201ENST00000489168 390 ntBASIC2.17□□□□□ -2.06
NKX3-1Q99801 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC2.17□□□□□ -2.06
NKX3-1Q99801 SNORA31.16-201ENST00000516773 139 ntBASIC2.17□□□□□ -2.06
NKX3-1Q99801 RNA5SP402-201ENST00000517148 110 ntBASIC2.17□□□□□ -2.06
NKX3-1Q99801 AC109329.1-201ENST00000518744 317 ntBASIC2.17□□□□□ -2.06
NKX3-1Q99801 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
NKX3-1Q99801 MRPS36P4-201ENST00000534436 298 ntBASIC2.17□□□□□ -2.06
NKX3-1Q99801 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.17□□□□□ -2.06
NKX3-1Q99801 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC2.17□□□□□ -2.06
NKX3-1Q99801 AC093249.1-201ENST00000567049 203 ntBASIC2.17□□□□□ -2.06
NKX3-1Q99801 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC2.17□□□□□ -2.06
NKX3-1Q99801 AC105245.1-201ENST00000581934 244 ntBASIC2.17□□□□□ -2.06
NKX3-1Q99801 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC2.17□□□□□ -2.06
NKX3-1Q99801 AL713866.2-201ENST00000603579 219 ntBASIC2.17□□□□□ -2.06
NKX3-1Q99801 AC016727.1-205ENST00000605437 569 ntBASIC2.17□□□□□ -2.06
NKX3-1Q99801 AC124303.1-201ENST00000605703 360 ntBASIC2.17□□□□□ -2.06
NKX3-1Q99801 AC069294.1-201ENST00000608397 350 ntBASIC2.17□□□□□ -2.06
NKX3-1Q99801 AL359757.2-201ENST00000624309 274 ntBASIC2.17□□□□□ -2.06
NKX3-1Q99801 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.17□□□□□ -2.06
NKX3-1Q99801 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
NKX3-1Q99801 AC002543.1-201ENST00000299783 1954 ntBASIC2.16□□□□□ -2.06
NKX3-1Q99801 AC069528.2-201ENST00000624849 1991 ntBASIC2.16□□□□□ -2.06
NKX3-1Q99801 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
NKX3-1Q99801 MIR6073-201ENST00000352083 89 ntBASIC2.16□□□□□ -2.06
NKX3-1Q99801 MIR449A-201ENST00000362113 91 ntBASIC2.16□□□□□ -2.06
NKX3-1Q99801 snoU2_19.1-201ENST00000362361 80 ntBASIC2.16□□□□□ -2.06
NKX3-1Q99801 RNU6-655P-201ENST00000362858 107 ntBASIC2.16□□□□□ -2.06
NKX3-1Q99801 RNU6-1141P-201ENST00000364520 107 ntBASIC2.16□□□□□ -2.06
NKX3-1Q99801 RNU6-867P-201ENST00000364956 107 ntBASIC2.16□□□□□ -2.06
NKX3-1Q99801 RNU6-842P-201ENST00000384269 107 ntBASIC2.16□□□□□ -2.06
NKX3-1Q99801 Y_RNA.529-201ENST00000384586 119 ntBASIC2.16□□□□□ -2.06
NKX3-1Q99801 RN7SKP158-201ENST00000410453 326 ntBASIC2.16□□□□□ -2.06
NKX3-1Q99801 Y_RNA.604-201ENST00000410574 102 ntBASIC2.16□□□□□ -2.06
NKX3-1Q99801 AL139396.1-201ENST00000421137 167 ntBASIC2.16□□□□□ -2.06
NKX3-1Q99801 AL133396.1-201ENST00000432048 687 ntBASIC2.16□□□□□ -2.06
NKX3-1Q99801 CR769767.1-201ENST00000436337 346 ntBASIC2.16□□□□□ -2.06
NKX3-1Q99801 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC2.16□□□□□ -2.06
NKX3-1Q99801 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC2.16□□□□□ -2.06
NKX3-1Q99801 AC108938.1-201ENST00000451204 136 ntBASIC2.16□□□□□ -2.06
NKX3-1Q99801 AL109933.2-201ENST00000452651 260 ntBASIC2.16□□□□□ -2.06
NKX3-1Q99801 snoU13.14-201ENST00000459372 104 ntBASIC2.16□□□□□ -2.06
NKX3-1Q99801 FO393415.2-201ENST00000480085 343 ntBASIC2.16□□□□□ -2.06
NKX3-1Q99801 RPL30P1-201ENST00000488676 339 ntBASIC2.16□□□□□ -2.06
NKX3-1Q99801 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC2.16□□□□□ -2.06
NKX3-1Q99801 AC096725.1-201ENST00000514266 313 ntBASIC2.16□□□□□ -2.06
NKX3-1Q99801 RNU6-277P-201ENST00000516272 106 ntBASIC2.16□□□□□ -2.06
NKX3-1Q99801 RPS3AP23-202ENST00000574601 686 ntBASIC2.16□□□□□ -2.06
NKX3-1Q99801 MIR5194-201ENST00000582634 120 ntBASIC2.16□□□□□ -2.06
NKX3-1Q99801 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.16□□□□□ -2.06
NKX3-1Q99801 AL078605.1-201ENST00000603529 500 ntBASIC2.16□□□□□ -2.06
NKX3-1Q99801 MIR8076-201ENST00000611401 83 ntBASIC2.16□□□□□ -2.06
NKX3-1Q99801 Y_RNA.804-201ENST00000615262 101 ntBASIC2.16□□□□□ -2.06
NKX3-1Q99801 MIR7157-201ENST00000635801 60 ntBASIC2.16□□□□□ -2.06
NKX3-1Q99801 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.16□□□□□ -2.06
NKX3-1Q99801 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.16□□□□□ -2.06
NKX3-1Q99801 SNORD50.1-201ENST00000362987 71 ntBASIC2.15□□□□□ -2.07
NKX3-1Q99801 RNA5SP125-201ENST00000364843 120 ntBASIC2.15□□□□□ -2.07
NKX3-1Q99801 RNU6-933P-201ENST00000384424 107 ntBASIC2.15□□□□□ -2.07
NKX3-1Q99801 BTF3L4P2-201ENST00000392798 346 ntBASIC2.15□□□□□ -2.07
NKX3-1Q99801 HNRNPDLP1-201ENST00000412834 550 ntBASIC2.15□□□□□ -2.07
NKX3-1Q99801 RPL37P10-201ENST00000412884 288 ntBASIC2.15□□□□□ -2.07
NKX3-1Q99801 AL590135.1-201ENST00000422215 156 ntBASIC2.15□□□□□ -2.07
NKX3-1Q99801 AC019205.3-201ENST00000424573 156 ntBASIC2.15□□□□□ -2.07
NKX3-1Q99801 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC2.15□□□□□ -2.07
NKX3-1Q99801 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC2.15□□□□□ -2.07
NKX3-1Q99801 AC244670.1-201ENST00000436879 112 ntBASIC2.15□□□□□ -2.07
NKX3-1Q99801 AC016700.2-201ENST00000446011 156 ntBASIC2.15□□□□□ -2.07
NKX3-1Q99801 AC107399.1-201ENST00000451226 265 ntBASIC2.15□□□□□ -2.07
NKX3-1Q99801 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC2.15□□□□□ -2.07
NKX3-1Q99801 AC015911.1-201ENST00000495111 156 ntBASIC2.15□□□□□ -2.07
NKX3-1Q99801 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC2.15□□□□□ -2.07
NKX3-1Q99801 AC116337.1-201ENST00000509680 687 ntBASIC2.15□□□□□ -2.07
NKX3-1Q99801 AC026782.1-201ENST00000512952 449 ntBASIC2.15□□□□□ -2.07
NKX3-1Q99801 RNU6-1213P-201ENST00000517075 94 ntBASIC2.15□□□□□ -2.07
NKX3-1Q99801 RNU1-54P-201ENST00000517181 120 ntBASIC2.15□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 151 ms