Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 RN7SKP49-201ENST00000516675 260 ntBASIC0.61□□□□□ -2.31
CCDC42Q96M95 AC027701.1-201ENST00000520155 823 ntTSL 3 BASIC0.61□□□□□ -2.31
CCDC42Q96M95 MTND2P7-201ENST00000521337 640 ntBASIC0.61□□□□□ -2.31
CCDC42Q96M95 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC0.61□□□□□ -2.31
CCDC42Q96M95 AC011979.2-201ENST00000527568 352 ntBASIC0.61□□□□□ -2.31
CCDC42Q96M95 AP003484.1-201ENST00000530974 250 ntBASIC0.61□□□□□ -2.31
CCDC42Q96M95 AC008015.1-201ENST00000555505 465 ntBASIC0.61□□□□□ -2.31
CCDC42Q96M95 AL158032.1-201ENST00000605401 106 ntBASIC0.61□□□□□ -2.31
CCDC42Q96M95 AP002782.1-201ENST00000623107 614 ntBASIC0.61□□□□□ -2.31
CCDC42Q96M95 AL445523.1-201ENST00000451184 1362 ntBASIC0.6□□□□□ -2.31
CCDC42Q96M95 MIR96-201ENST00000362288 78 ntBASIC0.6□□□□□ -2.31
CCDC42Q96M95 RNY1P10-201ENST00000363268 113 ntBASIC0.6□□□□□ -2.31
CCDC42Q96M95 RNU6-527P-201ENST00000363425 104 ntBASIC0.6□□□□□ -2.31
CCDC42Q96M95 Y_RNA.338-201ENST00000365320 114 ntBASIC0.6□□□□□ -2.31
CCDC42Q96M95 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC0.6□□□□□ -2.31
CCDC42Q96M95 ERHP2-201ENST00000402323 299 ntBASIC0.6□□□□□ -2.31
CCDC42Q96M95 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.6□□□□□ -2.31
CCDC42Q96M95 RNU6-1041P-201ENST00000516254 102 ntBASIC0.6□□□□□ -2.31
CCDC42Q96M95 AC090142.3-201ENST00000519012 385 ntBASIC0.6□□□□□ -2.31
CCDC42Q96M95 ADI1P3-201ENST00000549509 470 ntBASIC0.6□□□□□ -2.31
CCDC42Q96M95 AC087883.1-201ENST00000551882 391 ntBASIC0.6□□□□□ -2.31
CCDC42Q96M95 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC0.6□□□□□ -2.31
CCDC42Q96M95 AC133485.1-201ENST00000567176 124 ntBASIC0.6□□□□□ -2.31
CCDC42Q96M95 AC138907.6-201ENST00000568401 126 ntBASIC0.6□□□□□ -2.31
CCDC42Q96M95 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC0.6□□□□□ -2.31
CCDC42Q96M95 AC008752.3-201ENST00000588113 712 ntBASIC0.6□□□□□ -2.31
CCDC42Q96M95 HMGN1P30-201ENST00000589286 268 ntBASIC0.6□□□□□ -2.31
CCDC42Q96M95 AC068620.3-201ENST00000602749 560 ntBASIC0.6□□□□□ -2.31
CCDC42Q96M95 AC012507.3-201ENST00000603556 477 ntBASIC0.6□□□□□ -2.31
CCDC42Q96M95 AL353149.1-201ENST00000610667 244 ntBASIC0.6□□□□□ -2.31
CCDC42Q96M95 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.59□□□□□ -2.31
CCDC42Q96M95 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC0.59□□□□□ -2.31
CCDC42Q96M95 RNU6-534P-201ENST00000364877 106 ntBASIC0.59□□□□□ -2.31
CCDC42Q96M95 MIR200A-201ENST00000384875 90 ntBASIC0.59□□□□□ -2.31
CCDC42Q96M95 RNU6-910P-201ENST00000390844 107 ntBASIC0.59□□□□□ -2.31
CCDC42Q96M95 RNA5SP201-201ENST00000410316 124 ntBASIC0.59□□□□□ -2.31
CCDC42Q96M95 RPL22P18-201ENST00000417197 377 ntBASIC0.59□□□□□ -2.31
CCDC42Q96M95 AC002429.1-201ENST00000437672 148 ntBASIC0.59□□□□□ -2.31
CCDC42Q96M95 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC0.59□□□□□ -2.31
CCDC42Q96M95 AL049829.1-201ENST00000465411 156 ntBASIC0.59□□□□□ -2.31
CCDC42Q96M95 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC0.59□□□□□ -2.31
CCDC42Q96M95 RNA5SP102-201ENST00000516865 106 ntBASIC0.59□□□□□ -2.31
CCDC42Q96M95 AP002453.2-201ENST00000533503 320 ntBASIC0.59□□□□□ -2.31
CCDC42Q96M95 AC123904.2-201ENST00000548059 300 ntBASIC0.59□□□□□ -2.31
CCDC42Q96M95 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC0.59□□□□□ -2.31
CCDC42Q96M95 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC0.59□□□□□ -2.31
CCDC42Q96M95 AC109446.2-201ENST00000567872 497 ntBASIC0.59□□□□□ -2.31
CCDC42Q96M95 SNORA59B-202ENST00000578183 701 ntBASIC0.59□□□□□ -2.31
CCDC42Q96M95 AC022432.1-201ENST00000595739 310 ntBASIC0.59□□□□□ -2.31
CCDC42Q96M95 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.59□□□□□ -2.31
CCDC42Q96M95 RNU6-1192P-201ENST00000612197 107 ntBASIC0.59□□□□□ -2.31
CCDC42Q96M95 AC012409.4-201ENST00000612923 249 ntBASIC0.59□□□□□ -2.31
CCDC42Q96M95 AC008147.4-201ENST00000617570 1204 ntBASIC0.59□□□□□ -2.31
CCDC42Q96M95 RNU6-489P-201ENST00000618289 107 ntBASIC0.59□□□□□ -2.31
CCDC42Q96M95 uc_338.17-201ENST00000619633 179 ntBASIC0.59□□□□□ -2.31
CCDC42Q96M95 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.59□□□□□ -2.32
CCDC42Q96M95 MTND4P16-201ENST00000466108 1367 ntBASIC0.58□□□□□ -2.32
CCDC42Q96M95 RNU6-433P-201ENST00000363216 104 ntBASIC0.58□□□□□ -2.32
CCDC42Q96M95 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC0.58□□□□□ -2.32
CCDC42Q96M95 AL136310.1-201ENST00000404926 654 ntBASIC0.58□□□□□ -2.32
CCDC42Q96M95 RPS3AP37-201ENST00000419176 745 ntBASIC0.58□□□□□ -2.32
CCDC42Q96M95 RNU7-14P-201ENST00000459331 62 ntBASIC0.58□□□□□ -2.32
CCDC42Q96M95 AC010587.2-201ENST00000511727 448 ntBASIC0.58□□□□□ -2.32
CCDC42Q96M95 RNU6-1053P-201ENST00000515930 101 ntBASIC0.58□□□□□ -2.32
CCDC42Q96M95 SNORA31.2-201ENST00000516019 134 ntBASIC0.58□□□□□ -2.32
CCDC42Q96M95 RNU7-51P-201ENST00000516560 62 ntBASIC0.58□□□□□ -2.32
CCDC42Q96M95 RNU6-856P-201ENST00000516959 98 ntBASIC0.58□□□□□ -2.32
CCDC42Q96M95 AP002360.4-201ENST00000606980 481 ntBASIC0.58□□□□□ -2.32
CCDC42Q96M95 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC0.58□□□□□ -2.32
CCDC42Q96M95 AC097372.5-201ENST00000623665 376 ntBASIC0.58□□□□□ -2.32
CCDC42Q96M95 U4.7-201ENST00000638126 106 ntBASIC0.58□□□□□ -2.32
CCDC42Q96M95 AC068700.1-201ENST00000565862 3754 ntBASIC0.57□□□□□ -2.32
CCDC42Q96M95 AC073343.1-201ENST00000328239 651 ntBASIC0.57□□□□□ -2.32
CCDC42Q96M95 MIR337-201ENST00000362281 93 ntBASIC0.57□□□□□ -2.32
CCDC42Q96M95 Y_RNA.124-201ENST00000363339 93 ntBASIC0.57□□□□□ -2.32
CCDC42Q96M95 RNU6-371P-201ENST00000364283 108 ntBASIC0.57□□□□□ -2.32
CCDC42Q96M95 RNY4P16-201ENST00000364768 94 ntBASIC0.57□□□□□ -2.32
CCDC42Q96M95 SNORD116-12-201ENST00000384468 92 ntBASIC0.57□□□□□ -2.32
CCDC42Q96M95 RNU6ATAC15P-201ENST00000408279 121 ntBASIC0.57□□□□□ -2.32
CCDC42Q96M95 RNU6-1245P-201ENST00000411130 106 ntBASIC0.57□□□□□ -2.32
CCDC42Q96M95 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC0.57□□□□□ -2.32
CCDC42Q96M95 RPS3AP1-201ENST00000413190 320 ntBASIC0.57□□□□□ -2.32
CCDC42Q96M95 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC0.57□□□□□ -2.32
CCDC42Q96M95 AL353777.1-201ENST00000425552 326 ntBASIC0.57□□□□□ -2.32
CCDC42Q96M95 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC0.57□□□□□ -2.32
CCDC42Q96M95 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC0.57□□□□□ -2.32
CCDC42Q96M95 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC0.57□□□□□ -2.32
CCDC42Q96M95 AL157398.1-201ENST00000452981 186 ntBASIC0.57□□□□□ -2.32
CCDC42Q96M95 RAP1BP2-201ENST00000478270 544 ntBASIC0.57□□□□□ -2.32
CCDC42Q96M95 RNU6-1098P-201ENST00000516772 96 ntBASIC0.57□□□□□ -2.32
CCDC42Q96M95 RNU6-201P-201ENST00000517100 61 ntBASIC0.57□□□□□ -2.32
CCDC42Q96M95 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC0.57□□□□□ -2.32
CCDC42Q96M95 MIR5697-201ENST00000578045 78 ntBASIC0.57□□□□□ -2.32
CCDC42Q96M95 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC0.57□□□□□ -2.32
CCDC42Q96M95 CTHRC1P1-201ENST00000605383 469 ntBASIC0.57□□□□□ -2.32
CCDC42Q96M95 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC0.57□□□□□ -2.32
CCDC42Q96M95 AC126177.8-201ENST00000618339 1015 ntBASIC0.57□□□□□ -2.32
CCDC42Q96M95 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC0.57□□□□□ -2.32
CCDC42Q96M95 MTND4P14-201ENST00000435799 1354 ntBASIC0.57□□□□□ -2.32
CCDC42Q96M95 RNU6-105P-201ENST00000363909 104 ntBASIC0.56□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 88 ms