Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 RNU6-527P-201ENST00000363425 104 ntBASIC3.99□□□□□ -1.77
USHBP1Q8N6Y0 Y_RNA.270-201ENST00000364693 104 ntBASIC3.99□□□□□ -1.77
USHBP1Q8N6Y0 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
USHBP1Q8N6Y0 Y_RNA.581-201ENST00000391017 97 ntBASIC3.99□□□□□ -1.77
USHBP1Q8N6Y0 RNA5SP31-201ENST00000411144 127 ntBASIC3.99□□□□□ -1.77
USHBP1Q8N6Y0 RHEBP3-201ENST00000411920 351 ntBASIC3.99□□□□□ -1.77
USHBP1Q8N6Y0 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC3.99□□□□□ -1.77
USHBP1Q8N6Y0 HMGN2P7-201ENST00000456186 273 ntBASIC3.99□□□□□ -1.77
USHBP1Q8N6Y0 AC006026.2-201ENST00000457376 180 ntBASIC3.99□□□□□ -1.77
USHBP1Q8N6Y0 MED28P2-201ENST00000475771 317 ntBASIC3.99□□□□□ -1.77
USHBP1Q8N6Y0 RNU6-406P-201ENST00000516470 107 ntBASIC3.99□□□□□ -1.77
USHBP1Q8N6Y0 IGHVII-53-1-201ENST00000519538 255 ntBASIC3.99□□□□□ -1.77
USHBP1Q8N6Y0 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
USHBP1Q8N6Y0 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.99□□□□□ -1.77
USHBP1Q8N6Y0 AC009541.1-201ENST00000438279 2662 ntBASIC3.99□□□□□ -1.77
USHBP1Q8N6Y0 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.98□□□□□ -1.77
USHBP1Q8N6Y0 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.98□□□□□ -1.77
USHBP1Q8N6Y0 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.98□□□□□ -1.77
USHBP1Q8N6Y0 Y_RNA.16-201ENST00000362421 102 ntBASIC3.98□□□□□ -1.77
USHBP1Q8N6Y0 RNU6-1266P-201ENST00000362794 105 ntBASIC3.98□□□□□ -1.77
USHBP1Q8N6Y0 RNU6-105P-201ENST00000363909 104 ntBASIC3.98□□□□□ -1.77
USHBP1Q8N6Y0 Y_RNA.200-201ENST00000364018 102 ntBASIC3.98□□□□□ -1.77
USHBP1Q8N6Y0 Y_RNA.269-201ENST00000364685 89 ntBASIC3.98□□□□□ -1.77
USHBP1Q8N6Y0 Y_RNA.274-201ENST00000364714 101 ntBASIC3.98□□□□□ -1.77
USHBP1Q8N6Y0 SNORD78.2-201ENST00000391076 69 ntBASIC3.98□□□□□ -1.77
USHBP1Q8N6Y0 AL079342.1-201ENST00000401460 267 ntBASIC3.98□□□□□ -1.77
USHBP1Q8N6Y0 AL138878.1-201ENST00000405131 347 ntBASIC3.98□□□□□ -1.77
USHBP1Q8N6Y0 U3.37-201ENST00000408528 213 ntBASIC3.98□□□□□ -1.77
USHBP1Q8N6Y0 AL139156.1-201ENST00000412785 841 ntBASIC3.98□□□□□ -1.77
USHBP1Q8N6Y0 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC3.98□□□□□ -1.77
USHBP1Q8N6Y0 AC092047.1-201ENST00000424997 240 ntBASIC3.98□□□□□ -1.77
USHBP1Q8N6Y0 Z82188.1-201ENST00000436709 154 ntBASIC3.98□□□□□ -1.77
USHBP1Q8N6Y0 Z82210.1-201ENST00000440037 231 ntBASIC3.98□□□□□ -1.77
USHBP1Q8N6Y0 TOMM22P6-201ENST00000465035 409 ntBASIC3.98□□□□□ -1.77
USHBP1Q8N6Y0 RPL23AP75-201ENST00000491601 451 ntBASIC3.98□□□□□ -1.77
USHBP1Q8N6Y0 RNU1-143P-201ENST00000516296 146 ntBASIC3.98□□□□□ -1.77
USHBP1Q8N6Y0 RNU6-703P-201ENST00000516946 107 ntBASIC3.98□□□□□ -1.77
USHBP1Q8N6Y0 LINC00933-203ENST00000559812 219 ntBASIC3.98□□□□□ -1.77
USHBP1Q8N6Y0 AC023824.2-201ENST00000566185 400 ntBASIC3.98□□□□□ -1.77
USHBP1Q8N6Y0 MIR3690-201ENST00000580266 75 ntBASIC3.98□□□□□ -1.77
USHBP1Q8N6Y0 MIR4659A-201ENST00000580269 81 ntBASIC3.98□□□□□ -1.77
USHBP1Q8N6Y0 AC024153.1-201ENST00000603103 365 ntBASIC3.98□□□□□ -1.77
USHBP1Q8N6Y0 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC3.98□□□□□ -1.77
USHBP1Q8N6Y0 U1.23-201ENST00000610293 146 ntBASIC3.98□□□□□ -1.77
USHBP1Q8N6Y0 RNU1-68P-201ENST00000615382 146 ntBASIC3.98□□□□□ -1.77
USHBP1Q8N6Y0 U1.39-201ENST00000621562 146 ntBASIC3.98□□□□□ -1.77
USHBP1Q8N6Y0 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC3.98□□□□□ -1.77
USHBP1Q8N6Y0 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.98□□□□□ -1.77
USHBP1Q8N6Y0 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
USHBP1Q8N6Y0 AC007496.3-201ENST00000624987 3443 ntBASIC3.98□□□□□ -1.77
USHBP1Q8N6Y0 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC3.97□□□□□ -1.77
USHBP1Q8N6Y0 RNU6-1301P-201ENST00000362724 104 ntBASIC3.97□□□□□ -1.77
USHBP1Q8N6Y0 SNORD113-8-201ENST00000363497 74 ntBASIC3.97□□□□□ -1.77
USHBP1Q8N6Y0 Y_RNA.150-201ENST00000363562 102 ntBASIC3.97□□□□□ -1.77
USHBP1Q8N6Y0 Y_RNA.541-201ENST00000384640 113 ntBASIC3.97□□□□□ -1.77
USHBP1Q8N6Y0 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
USHBP1Q8N6Y0 RNU2-20P-201ENST00000410425 191 ntBASIC3.97□□□□□ -1.77
USHBP1Q8N6Y0 AL358453.1-201ENST00000422522 250 ntBASIC3.97□□□□□ -1.77
USHBP1Q8N6Y0 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC3.97□□□□□ -1.77
USHBP1Q8N6Y0 AL445305.1-201ENST00000432577 575 ntBASIC3.97□□□□□ -1.77
USHBP1Q8N6Y0 VDAC1P3-201ENST00000434069 851 ntBASIC3.97□□□□□ -1.77
USHBP1Q8N6Y0 AC105272.1-201ENST00000438604 198 ntBASIC3.97□□□□□ -1.77
USHBP1Q8N6Y0 AC104332.1-201ENST00000440471 797 ntBASIC3.97□□□□□ -1.77
USHBP1Q8N6Y0 AC016700.2-201ENST00000446011 156 ntBASIC3.97□□□□□ -1.77
USHBP1Q8N6Y0 AL392103.1-201ENST00000447000 198 ntBASIC3.97□□□□□ -1.77
USHBP1Q8N6Y0 AL136097.1-201ENST00000456945 913 ntBASIC3.97□□□□□ -1.77
USHBP1Q8N6Y0 RN7SL429P-201ENST00000479090 223 ntBASIC3.97□□□□□ -1.77
USHBP1Q8N6Y0 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.97□□□□□ -1.77
USHBP1Q8N6Y0 RN7SL489P-201ENST00000486185 223 ntBASIC3.97□□□□□ -1.77
USHBP1Q8N6Y0 RN7SL327P-201ENST00000488659 223 ntBASIC3.97□□□□□ -1.77
USHBP1Q8N6Y0 RN7SL20P-201ENST00000488827 297 ntBASIC3.97□□□□□ -1.77
USHBP1Q8N6Y0 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC3.97□□□□□ -1.77
USHBP1Q8N6Y0 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
USHBP1Q8N6Y0 SCGB1D5P-201ENST00000515134 247 ntBASIC3.97□□□□□ -1.77
USHBP1Q8N6Y0 RNU2-58P-201ENST00000516403 183 ntBASIC3.97□□□□□ -1.77
USHBP1Q8N6Y0 RNA5SP367-201ENST00000516557 118 ntBASIC3.97□□□□□ -1.77
USHBP1Q8N6Y0 RNA5SP309-201ENST00000516670 106 ntBASIC3.97□□□□□ -1.77
USHBP1Q8N6Y0 SCARNA24.2-201ENST00000516968 130 ntBASIC3.97□□□□□ -1.77
USHBP1Q8N6Y0 MRPS36P4-201ENST00000534436 298 ntBASIC3.97□□□□□ -1.77
USHBP1Q8N6Y0 AC079600.2-201ENST00000550076 130 ntBASIC3.97□□□□□ -1.77
USHBP1Q8N6Y0 AC010928.2-201ENST00000588017 287 ntBASIC3.97□□□□□ -1.77
USHBP1Q8N6Y0 RN7SL853P-201ENST00000617250 223 ntBASIC3.97□□□□□ -1.77
USHBP1Q8N6Y0 RNU1-35P-201ENST00000362782 153 ntBASIC3.96□□□□□ -1.78
USHBP1Q8N6Y0 RNU6-17P-201ENST00000384245 107 ntBASIC3.96□□□□□ -1.78
USHBP1Q8N6Y0 RNU6-18P-201ENST00000384527 107 ntBASIC3.96□□□□□ -1.78
USHBP1Q8N6Y0 RNU6-140P-201ENST00000384566 108 ntBASIC3.96□□□□□ -1.78
USHBP1Q8N6Y0 Y_RNA.602-201ENST00000410535 92 ntBASIC3.96□□□□□ -1.78
USHBP1Q8N6Y0 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.96□□□□□ -1.78
USHBP1Q8N6Y0 AC009296.1-201ENST00000443146 155 ntBASIC3.96□□□□□ -1.78
USHBP1Q8N6Y0 RPS26P21-201ENST00000475397 348 ntBASIC3.96□□□□□ -1.78
USHBP1Q8N6Y0 RPL23AP49-201ENST00000492925 468 ntBASIC3.96□□□□□ -1.78
USHBP1Q8N6Y0 SNORA43.2-201ENST00000516652 128 ntBASIC3.96□□□□□ -1.78
USHBP1Q8N6Y0 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.96□□□□□ -1.78
USHBP1Q8N6Y0 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC3.96□□□□□ -1.78
USHBP1Q8N6Y0 Xist_exon1.1-201ENST00000618930 85 ntBASIC3.96□□□□□ -1.78
USHBP1Q8N6Y0 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.95□□□□□ -1.78
USHBP1Q8N6Y0 RNU6-968P-201ENST00000384076 107 ntBASIC3.95□□□□□ -1.78
USHBP1Q8N6Y0 SNORD63-201ENST00000384262 68 ntBASIC3.95□□□□□ -1.78
USHBP1Q8N6Y0 RNU6-301P-201ENST00000384277 107 ntBASIC3.95□□□□□ -1.78
USHBP1Q8N6Y0 RNU6-886P-201ENST00000384319 105 ntBASIC3.95□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 113 ms