Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC-0.03□□□□□ -2.41
USF3Q68DE3 RNU6-839P-201ENST00000363347 108 ntBASIC-0.03□□□□□ -2.41
USF3Q68DE3 RNU6-1335P-201ENST00000365426 107 ntBASIC-0.03□□□□□ -2.41
USF3Q68DE3 RNU6-793P-201ENST00000384233 104 ntBASIC-0.03□□□□□ -2.41
USF3Q68DE3 SNORD116-23-201ENST00000384645 92 ntBASIC-0.03□□□□□ -2.41
USF3Q68DE3 MIR140-201ENST00000385282 100 ntBASIC-0.03□□□□□ -2.41
USF3Q68DE3 UBE2V1P15-201ENST00000407776 448 ntBASIC-0.03□□□□□ -2.41
USF3Q68DE3 RNA5SP111-201ENST00000411386 101 ntBASIC-0.03□□□□□ -2.41
USF3Q68DE3 MTCO1P21-201ENST00000416634 589 ntBASIC-0.03□□□□□ -2.41
USF3Q68DE3 GTF2IP3-201ENST00000433887 494 ntBASIC-0.03□□□□□ -2.41
USF3Q68DE3 OFD1P7Y-201ENST00000454643 1155 ntBASIC-0.03□□□□□ -2.41
USF3Q68DE3 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC-0.03□□□□□ -2.41
USF3Q68DE3 MTND5P13-201ENST00000513046 1079 ntBASIC-0.03□□□□□ -2.41
USF3Q68DE3 RNU5F-2P-201ENST00000516066 82 ntBASIC-0.03□□□□□ -2.41
USF3Q68DE3 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC-0.03□□□□□ -2.41
USF3Q68DE3 AL391001.1-201ENST00000602747 715 ntBASIC-0.03□□□□□ -2.41
USF3Q68DE3 AC017083.3-201ENST00000609955 700 ntBASIC-0.03□□□□□ -2.41
USF3Q68DE3 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC-0.03□□□□□ -2.41
USF3Q68DE3 AC099654.9-201ENST00000637055 678 ntBASIC-0.03□□□□□ -2.41
USF3Q68DE3 SNORD114-9-201ENST00000364370 72 ntBASIC-0.04□□□□□ -2.42
USF3Q68DE3 RNU6-1067P-201ENST00000384752 107 ntBASIC-0.04□□□□□ -2.42
USF3Q68DE3 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC-0.04□□□□□ -2.42
USF3Q68DE3 COX7BP2-201ENST00000437976 242 ntBASIC-0.04□□□□□ -2.42
USF3Q68DE3 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC-0.04□□□□□ -2.42
USF3Q68DE3 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC-0.04□□□□□ -2.42
USF3Q68DE3 RPS27AP8-201ENST00000452665 445 ntBASIC-0.04□□□□□ -2.42
USF3Q68DE3 AC022493.2-201ENST00000506122 481 ntBASIC-0.04□□□□□ -2.42
USF3Q68DE3 RNU6-572P-201ENST00000516724 80 ntBASIC-0.04□□□□□ -2.42
USF3Q68DE3 SCARNA16.5-201ENST00000517114 183 ntBASIC-0.04□□□□□ -2.42
USF3Q68DE3 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC-0.04□□□□□ -2.42
USF3Q68DE3 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC-0.05□□□□□ -2.42
USF3Q68DE3 RNA5SP214-201ENST00000363378 118 ntBASIC-0.05□□□□□ -2.42
USF3Q68DE3 RNU6-1066P-201ENST00000363573 105 ntBASIC-0.05□□□□□ -2.42
USF3Q68DE3 RNU6-512P-201ENST00000364438 103 ntBASIC-0.05□□□□□ -2.42
USF3Q68DE3 RNA5SP219-201ENST00000390940 113 ntBASIC-0.05□□□□□ -2.42
USF3Q68DE3 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC-0.05□□□□□ -2.42
USF3Q68DE3 AL590556.1-201ENST00000423231 483 ntBASIC-0.05□□□□□ -2.42
USF3Q68DE3 AC019178.2-201ENST00000423595 505 ntBASIC-0.05□□□□□ -2.42
USF3Q68DE3 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC-0.05□□□□□ -2.42
USF3Q68DE3 RAD1P2-201ENST00000446414 663 ntBASIC-0.05□□□□□ -2.42
USF3Q68DE3 NDUFB4P10-201ENST00000452541 359 ntBASIC-0.05□□□□□ -2.42
USF3Q68DE3 snoU13.30-201ENST00000458951 104 ntBASIC-0.05□□□□□ -2.42
USF3Q68DE3 HMGB1P30-201ENST00000492455 606 ntBASIC-0.05□□□□□ -2.42
USF3Q68DE3 SNORA14.1-201ENST00000516113 141 ntBASIC-0.05□□□□□ -2.42
USF3Q68DE3 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC-0.05□□□□□ -2.42
USF3Q68DE3 IGLVI-20-201ENST00000519296 130 ntBASIC-0.05□□□□□ -2.42
USF3Q68DE3 AC106038.2-201ENST00000520706 568 ntBASIC-0.05□□□□□ -2.42
USF3Q68DE3 MIR4290-201ENST00000583807 95 ntBASIC-0.05□□□□□ -2.42
USF3Q68DE3 AL353778.1-201ENST00000603149 408 ntBASIC-0.05□□□□□ -2.42
USF3Q68DE3 RPL21P136-201ENST00000605378 396 ntBASIC-0.05□□□□□ -2.42
USF3Q68DE3 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC-0.05□□□□□ -2.42
USF3Q68DE3 AL360219.1-201ENST00000610230 366 ntBASIC-0.05□□□□□ -2.42
USF3Q68DE3 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC-0.05□□□□□ -2.42
USF3Q68DE3 RMST_4.1-201ENST00000616886 107 ntBASIC-0.05□□□□□ -2.42
USF3Q68DE3 AL445264.1-201ENST00000621719 171 ntBASIC-0.05□□□□□ -2.42
USF3Q68DE3 RNU6-166P-201ENST00000384371 107 ntBASIC-0.05□□□□□ -2.42
USF3Q68DE3 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC-0.05□□□□□ -2.42
USF3Q68DE3 VPS26BP1-201ENST00000417155 755 ntBASIC-0.05□□□□□ -2.42
USF3Q68DE3 MTND4P20-201ENST00000424125 869 ntBASIC-0.05□□□□□ -2.42
USF3Q68DE3 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC-0.05□□□□□ -2.42
USF3Q68DE3 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC-0.05□□□□□ -2.42
USF3Q68DE3 AC116347.2-201ENST00000514912 523 ntBASIC-0.05□□□□□ -2.42
USF3Q68DE3 SNORA76.2-201ENST00000517095 137 ntBASIC-0.05□□□□□ -2.42
USF3Q68DE3 AC025423.5-201ENST00000550230 219 ntBASIC-0.05□□□□□ -2.42
USF3Q68DE3 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC-0.05□□□□□ -2.42
USF3Q68DE3 AL158211.1-201ENST00000566763 763 ntBASIC-0.05□□□□□ -2.42
USF3Q68DE3 AC137800.2-201ENST00000574375 120 ntBASIC-0.05□□□□□ -2.42
USF3Q68DE3 MIR4709-201ENST00000577272 72 ntBASIC-0.05□□□□□ -2.42
USF3Q68DE3 AL159153.1-201ENST00000619688 317 ntBASIC-0.05□□□□□ -2.42
USF3Q68DE3 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC-0.05□□□□□ -2.42
USF3Q68DE3 MIR3529-201ENST00000637713 78 ntBASIC-0.05□□□□□ -2.42
USF3Q68DE3 Y_RNA.363-201ENST00000365529 113 ntBASIC-0.06□□□□□ -2.42
USF3Q68DE3 SNORA32.3-201ENST00000384772 121 ntBASIC-0.06□□□□□ -2.42
USF3Q68DE3 SNORD12-201ENST00000391002 90 ntBASIC-0.06□□□□□ -2.42
USF3Q68DE3 AF228730.1-201ENST00000397972 663 ntBASIC-0.06□□□□□ -2.42
USF3Q68DE3 RNU6ATAC8P-201ENST00000408460 126 ntBASIC-0.06□□□□□ -2.42
USF3Q68DE3 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC-0.06□□□□□ -2.42
USF3Q68DE3 UBE2V1P10-201ENST00000414685 269 ntBASIC-0.06□□□□□ -2.42
USF3Q68DE3 AC060773.1-201ENST00000421698 310 ntBASIC-0.06□□□□□ -2.42
USF3Q68DE3 AL139421.1-201ENST00000423010 169 ntBASIC-0.06□□□□□ -2.42
USF3Q68DE3 MTCO3P29-201ENST00000432119 779 ntBASIC-0.06□□□□□ -2.42
USF3Q68DE3 AL008629.1-201ENST00000438615 184 ntBASIC-0.06□□□□□ -2.42
USF3Q68DE3 RPL7P55-201ENST00000450522 746 ntBASIC-0.06□□□□□ -2.42
USF3Q68DE3 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC-0.06□□□□□ -2.42
USF3Q68DE3 AC097473.1-201ENST00000508142 408 ntBASIC-0.06□□□□□ -2.42
USF3Q68DE3 KRTAP13-6P-201ENST00000508999 371 ntBASIC-0.06□□□□□ -2.42
USF3Q68DE3 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC-0.06□□□□□ -2.42
USF3Q68DE3 AC093012.1-202ENST00000549403 582 ntBASIC-0.06□□□□□ -2.42
USF3Q68DE3 AC060771.1-201ENST00000582031 164 ntBASIC-0.06□□□□□ -2.42
USF3Q68DE3 AP001981.2-201ENST00000603241 418 ntBASIC-0.06□□□□□ -2.42
USF3Q68DE3 AL358072.1-201ENST00000604156 575 ntBASIC-0.06□□□□□ -2.42
USF3Q68DE3 SEPT14P17-201ENST00000617978 177 ntBASIC-0.06□□□□□ -2.42
USF3Q68DE3 AP000676.3-201ENST00000623299 569 ntBASIC-0.06□□□□□ -2.42
USF3Q68DE3 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC-0.06□□□□□ -2.42
USF3Q68DE3 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC-0.06□□□□□ -2.42
USF3Q68DE3 RNU6-1123P-201ENST00000362347 106 ntBASIC-0.06□□□□□ -2.42
USF3Q68DE3 Y_RNA.136-201ENST00000363444 102 ntBASIC-0.06□□□□□ -2.42
USF3Q68DE3 SNORA42.1-201ENST00000363515 137 ntBASIC-0.06□□□□□ -2.42
USF3Q68DE3 RNU6-302P-201ENST00000365249 107 ntBASIC-0.06□□□□□ -2.42
USF3Q68DE3 AL355796.1-201ENST00000406706 323 ntBASIC-0.06□□□□□ -2.42
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms