Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC019193.3-201ENST00000609144 554 ntBASIC2.28□□□□□ -2.04
PDLIM3Q53GG5 AL355073.2-201ENST00000612106 557 ntBASIC2.28□□□□□ -2.04
PDLIM3Q53GG5 Y_RNA.804-201ENST00000615262 101 ntBASIC2.28□□□□□ -2.04
PDLIM3Q53GG5 AC090517.3-201ENST00000625170 141 ntBASIC2.28□□□□□ -2.04
PDLIM3Q53GG5 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC2.28□□□□□ -2.04
PDLIM3Q53GG5 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
PDLIM3Q53GG5 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
PDLIM3Q53GG5 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.05
PDLIM3Q53GG5 AC092593.1-201ENST00000515413 1815 ntBASIC2.27□□□□□ -2.05
PDLIM3Q53GG5 Y_RNA.70-201ENST00000362886 110 ntBASIC2.27□□□□□ -2.05
PDLIM3Q53GG5 Y_RNA.88-201ENST00000363029 99 ntBASIC2.27□□□□□ -2.05
PDLIM3Q53GG5 Y_RNA.504-201ENST00000384481 104 ntBASIC2.27□□□□□ -2.05
PDLIM3Q53GG5 MIR517A-201ENST00000385001 87 ntBASIC2.27□□□□□ -2.05
PDLIM3Q53GG5 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC2.27□□□□□ -2.05
PDLIM3Q53GG5 AL139396.1-201ENST00000421137 167 ntBASIC2.27□□□□□ -2.05
PDLIM3Q53GG5 MTCO3P46-201ENST00000425787 232 ntBASIC2.27□□□□□ -2.05
PDLIM3Q53GG5 RPS3AP52-201ENST00000435639 297 ntBASIC2.27□□□□□ -2.05
PDLIM3Q53GG5 MTATP6P23-201ENST00000440153 476 ntBASIC2.27□□□□□ -2.05
PDLIM3Q53GG5 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC2.27□□□□□ -2.05
PDLIM3Q53GG5 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC2.27□□□□□ -2.05
PDLIM3Q53GG5 AC003982.1-202ENST00000469928 248 ntBASIC2.27□□□□□ -2.05
PDLIM3Q53GG5 MTCO1P29-201ENST00000496868 288 ntBASIC2.27□□□□□ -2.05
PDLIM3Q53GG5 AC091951.2-201ENST00000500762 203 ntBASIC2.27□□□□□ -2.05
PDLIM3Q53GG5 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC2.27□□□□□ -2.05
PDLIM3Q53GG5 HMGB3P3-201ENST00000510526 400 ntBASIC2.27□□□□□ -2.05
PDLIM3Q53GG5 AC046134.1-201ENST00000514454 666 ntBASIC2.27□□□□□ -2.05
PDLIM3Q53GG5 AP005902.1-201ENST00000521358 186 ntBASIC2.27□□□□□ -2.05
PDLIM3Q53GG5 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC2.27□□□□□ -2.05
PDLIM3Q53GG5 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC2.27□□□□□ -2.05
PDLIM3Q53GG5 AC100830.2-201ENST00000581636 240 ntBASIC2.27□□□□□ -2.05
PDLIM3Q53GG5 AC005046.1-201ENST00000608515 625 ntBASIC2.27□□□□□ -2.05
PDLIM3Q53GG5 AC104237.2-201ENST00000612456 443 ntBASIC2.27□□□□□ -2.05
PDLIM3Q53GG5 AC245884.12-201ENST00000615364 59 ntBASIC2.27□□□□□ -2.05
PDLIM3Q53GG5 AL353997.5-201ENST00000618886 171 ntBASIC2.27□□□□□ -2.05
PDLIM3Q53GG5 AC007792.1-201ENST00000623023 402 ntBASIC2.27□□□□□ -2.05
PDLIM3Q53GG5 MIR203B-201ENST00000636080 86 ntBASIC2.27□□□□□ -2.05
PDLIM3Q53GG5 AC131280.1-202ENST00000624067 4211 ntBASIC2.27□□□□□ -2.05
PDLIM3Q53GG5 AC009541.1-201ENST00000438279 2662 ntBASIC2.27□□□□□ -2.05
PDLIM3Q53GG5 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC2.26□□□□□ -2.05
PDLIM3Q53GG5 snoU2_19.1-201ENST00000362361 80 ntBASIC2.26□□□□□ -2.05
PDLIM3Q53GG5 RNU6-486P-201ENST00000363116 107 ntBASIC2.26□□□□□ -2.05
PDLIM3Q53GG5 Y_RNA.123-201ENST00000363338 102 ntBASIC2.26□□□□□ -2.05
PDLIM3Q53GG5 RNU6-43P-201ENST00000384302 107 ntBASIC2.26□□□□□ -2.05
PDLIM3Q53GG5 RNU1-57P-201ENST00000384491 166 ntBASIC2.26□□□□□ -2.05
PDLIM3Q53GG5 MIR186-201ENST00000384988 86 ntBASIC2.26□□□□□ -2.05
PDLIM3Q53GG5 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.26□□□□□ -2.05
PDLIM3Q53GG5 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC2.26□□□□□ -2.05
PDLIM3Q53GG5 BTF3L4P2-201ENST00000392798 346 ntBASIC2.26□□□□□ -2.05
PDLIM3Q53GG5 RPS29P13-201ENST00000402041 169 ntBASIC2.26□□□□□ -2.05
PDLIM3Q53GG5 AL356432.1-201ENST00000405809 419 ntBASIC2.26□□□□□ -2.05
PDLIM3Q53GG5 MIR1289-2-201ENST00000408360 111 ntBASIC2.26□□□□□ -2.05
PDLIM3Q53GG5 RN7SKP32-201ENST00000410167 303 ntBASIC2.26□□□□□ -2.05
PDLIM3Q53GG5 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.26□□□□□ -2.05
PDLIM3Q53GG5 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.26□□□□□ -2.05
PDLIM3Q53GG5 ARL5AP4-201ENST00000430731 512 ntBASIC2.26□□□□□ -2.05
PDLIM3Q53GG5 AC245517.4-201ENST00000448601 281 ntBASIC2.26□□□□□ -2.05
PDLIM3Q53GG5 U8.21-201ENST00000459536 136 ntBASIC2.26□□□□□ -2.05
PDLIM3Q53GG5 CKS1BP2-201ENST00000497342 240 ntBASIC2.26□□□□□ -2.05
PDLIM3Q53GG5 RNU2-53P-201ENST00000516257 147 ntBASIC2.26□□□□□ -2.05
PDLIM3Q53GG5 AC134698.4-201ENST00000523451 826 ntBASIC2.26□□□□□ -2.05
PDLIM3Q53GG5 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
PDLIM3Q53GG5 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC2.26□□□□□ -2.05
PDLIM3Q53GG5 HSPE1P4-201ENST00000550617 308 ntBASIC2.26□□□□□ -2.05
PDLIM3Q53GG5 AC007375.1-201ENST00000554513 578 ntBASIC2.26□□□□□ -2.05
PDLIM3Q53GG5 BNIP3P16-201ENST00000589779 534 ntBASIC2.26□□□□□ -2.05
PDLIM3Q53GG5 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC2.26□□□□□ -2.05
PDLIM3Q53GG5 uc_338.5-201ENST00000611839 155 ntBASIC2.26□□□□□ -2.05
PDLIM3Q53GG5 AC022306.2-201ENST00000617563 647 ntBASIC2.26□□□□□ -2.05
PDLIM3Q53GG5 TPTEP1-208ENST00000636884 213 ntBASIC2.26□□□□□ -2.05
PDLIM3Q53GG5 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.26□□□□□ -2.05
PDLIM3Q53GG5 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.26□□□□□ -2.05
PDLIM3Q53GG5 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
PDLIM3Q53GG5 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC2.25□□□□□ -2.05
PDLIM3Q53GG5 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.25□□□□□ -2.05
PDLIM3Q53GG5 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
PDLIM3Q53GG5 HAUS6P2-201ENST00000433254 2404 ntBASIC2.25□□□□□ -2.05
PDLIM3Q53GG5 Y_RNA.135-201ENST00000363439 95 ntBASIC2.25□□□□□ -2.05
PDLIM3Q53GG5 Y_RNA.142-201ENST00000363491 102 ntBASIC2.25□□□□□ -2.05
PDLIM3Q53GG5 RNU6-1059P-201ENST00000363752 98 ntBASIC2.25□□□□□ -2.05
PDLIM3Q53GG5 Y_RNA.356-201ENST00000365475 113 ntBASIC2.25□□□□□ -2.05
PDLIM3Q53GG5 SNORA18.3-201ENST00000384122 132 ntBASIC2.25□□□□□ -2.05
PDLIM3Q53GG5 RNA5SP390-201ENST00000410191 113 ntBASIC2.25□□□□□ -2.05
PDLIM3Q53GG5 CYCSP48-201ENST00000417124 323 ntBASIC2.25□□□□□ -2.05
PDLIM3Q53GG5 AC008267.5-201ENST00000424928 265 ntBASIC2.25□□□□□ -2.05
PDLIM3Q53GG5 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC2.25□□□□□ -2.05
PDLIM3Q53GG5 MTND5P20-201ENST00000448677 143 ntBASIC2.25□□□□□ -2.05
PDLIM3Q53GG5 AC107399.1-201ENST00000451226 265 ntBASIC2.25□□□□□ -2.05
PDLIM3Q53GG5 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC2.25□□□□□ -2.05
PDLIM3Q53GG5 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC2.25□□□□□ -2.05
PDLIM3Q53GG5 Y_RNA.702-201ENST00000516843 96 ntBASIC2.25□□□□□ -2.05
PDLIM3Q53GG5 RNU1-54P-201ENST00000517181 120 ntBASIC2.25□□□□□ -2.05
PDLIM3Q53GG5 AC079598.5-201ENST00000547460 117 ntBASIC2.25□□□□□ -2.05
PDLIM3Q53GG5 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC2.25□□□□□ -2.05
PDLIM3Q53GG5 AC009127.3-201ENST00000570531 403 ntBASIC2.25□□□□□ -2.05
PDLIM3Q53GG5 UBE2V2P2-201ENST00000587677 504 ntBASIC2.25□□□□□ -2.05
PDLIM3Q53GG5 POLR3GP2-201ENST00000588366 668 ntBASIC2.25□□□□□ -2.05
PDLIM3Q53GG5 RPL30P11-203ENST00000598995 310 ntBASIC2.25□□□□□ -2.05
PDLIM3Q53GG5 AP001836.1-201ENST00000604675 523 ntBASIC2.25□□□□□ -2.05
PDLIM3Q53GG5 AC009994.1-201ENST00000606889 253 ntBASIC2.25□□□□□ -2.05
PDLIM3Q53GG5 RNU6-91P-201ENST00000607774 107 ntBASIC2.25□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 114.8 ms