Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 AL356274.2-201ENST00000624379 3752 ntBASIC2.8□□□□□ -1.96
HOXA4Q00056 MTND5P6-201ENST00000422338 1798 ntBASIC2.8□□□□□ -1.96
HOXA4Q00056 AC092268.1-201ENST00000342691 405 ntBASIC2.8□□□□□ -1.96
HOXA4Q00056 Y_RNA.319-201ENST00000365138 92 ntBASIC2.8□□□□□ -1.96
HOXA4Q00056 Y_RNA.350-201ENST00000365409 98 ntBASIC2.8□□□□□ -1.96
HOXA4Q00056 RNU6-281P-201ENST00000384212 103 ntBASIC2.8□□□□□ -1.96
HOXA4Q00056 Y_RNA.477-201ENST00000384352 108 ntBASIC2.8□□□□□ -1.96
HOXA4Q00056 MIR184-201ENST00000384962 84 ntBASIC2.8□□□□□ -1.96
HOXA4Q00056 MIR10B-201ENST00000385011 110 ntBASIC2.8□□□□□ -1.96
HOXA4Q00056 RNU6-750P-201ENST00000390946 107 ntBASIC2.8□□□□□ -1.96
HOXA4Q00056 RNU6-159P-201ENST00000391080 106 ntBASIC2.8□□□□□ -1.96
HOXA4Q00056 AC012306.1-201ENST00000423267 114 ntBASIC2.8□□□□□ -1.96
HOXA4Q00056 BX679664.1-201ENST00000434429 253 ntBASIC2.8□□□□□ -1.96
HOXA4Q00056 RPS15AP7-201ENST00000439294 405 ntBASIC2.8□□□□□ -1.96
HOXA4Q00056 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC2.8□□□□□ -1.96
HOXA4Q00056 AC091153.1-201ENST00000466297 402 ntBASIC2.8□□□□□ -1.96
HOXA4Q00056 AC107626.1-201ENST00000471084 183 ntBASIC2.8□□□□□ -1.96
HOXA4Q00056 AC090525.1-201ENST00000479116 478 ntBASIC2.8□□□□□ -1.96
HOXA4Q00056 FCF1P8-201ENST00000510322 597 ntBASIC2.8□□□□□ -1.96
HOXA4Q00056 RNU6-1114P-201ENST00000516022 107 ntBASIC2.8□□□□□ -1.96
HOXA4Q00056 SNORD19.2-201ENST00000516978 73 ntBASIC2.8□□□□□ -1.96
HOXA4Q00056 MIR4425-201ENST00000580572 84 ntBASIC2.8□□□□□ -1.96
HOXA4Q00056 MIR4300-201ENST00000581016 96 ntBASIC2.8□□□□□ -1.96
HOXA4Q00056 AL137843.1-201ENST00000605078 385 ntBASIC2.8□□□□□ -1.96
HOXA4Q00056 AC019176.2-201ENST00000611579 315 ntBASIC2.8□□□□□ -1.96
HOXA4Q00056 AC078938.1-201ENST00000620993 318 ntBASIC2.8□□□□□ -1.96
HOXA4Q00056 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
HOXA4Q00056 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC2.8□□□□□ -1.96
HOXA4Q00056 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC2.8□□□□□ -1.96
HOXA4Q00056 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC2.79□□□□□ -1.96
HOXA4Q00056 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
HOXA4Q00056 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC2.79□□□□□ -1.96
HOXA4Q00056 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC2.79□□□□□ -1.96
HOXA4Q00056 RNU6-1159P-201ENST00000362933 107 ntBASIC2.79□□□□□ -1.96
HOXA4Q00056 RNU6-937P-201ENST00000384325 106 ntBASIC2.79□□□□□ -1.96
HOXA4Q00056 Y_RNA.489-201ENST00000384410 101 ntBASIC2.79□□□□□ -1.96
HOXA4Q00056 MIR549A-201ENST00000385268 96 ntBASIC2.79□□□□□ -1.96
HOXA4Q00056 SNORD78.2-201ENST00000391076 69 ntBASIC2.79□□□□□ -1.96
HOXA4Q00056 RNU6-1093P-201ENST00000391194 107 ntBASIC2.79□□□□□ -1.96
HOXA4Q00056 RNU6ATAC23P-201ENST00000408448 123 ntBASIC2.79□□□□□ -1.96
HOXA4Q00056 RNU6-1077P-201ENST00000410506 102 ntBASIC2.79□□□□□ -1.96
HOXA4Q00056 RNU6-1203P-201ENST00000410703 110 ntBASIC2.79□□□□□ -1.96
HOXA4Q00056 RNU2-25P-201ENST00000411041 191 ntBASIC2.79□□□□□ -1.96
HOXA4Q00056 AL365496.1-201ENST00000426885 215 ntBASIC2.79□□□□□ -1.96
HOXA4Q00056 ARL5AP4-201ENST00000430731 512 ntBASIC2.79□□□□□ -1.96
HOXA4Q00056 AC096638.1-201ENST00000444678 216 ntBASIC2.79□□□□□ -1.96
HOXA4Q00056 Z75741.1-201ENST00000446793 314 ntBASIC2.79□□□□□ -1.96
HOXA4Q00056 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC2.79□□□□□ -1.96
HOXA4Q00056 BX510359.1-201ENST00000456973 237 ntBASIC2.79□□□□□ -1.96
HOXA4Q00056 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC2.79□□□□□ -1.96
HOXA4Q00056 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC2.79□□□□□ -1.96
HOXA4Q00056 AC026784.1-201ENST00000507986 352 ntBASIC2.79□□□□□ -1.96
HOXA4Q00056 AC107934.2-201ENST00000518653 310 ntBASIC2.79□□□□□ -1.96
HOXA4Q00056 IGKV2-23-201ENST00000518729 323 ntBASIC2.79□□□□□ -1.96
HOXA4Q00056 IGHVII-62-1-201ENST00000519283 235 ntBASIC2.79□□□□□ -1.96
HOXA4Q00056 TGIF1P1-201ENST00000558095 802 ntBASIC2.79□□□□□ -1.96
HOXA4Q00056 AC021231.3-201ENST00000558497 370 ntBASIC2.79□□□□□ -1.96
HOXA4Q00056 MIR5695-201ENST00000579717 85 ntBASIC2.79□□□□□ -1.96
HOXA4Q00056 AC012433.1-201ENST00000588916 398 ntBASIC2.79□□□□□ -1.96
HOXA4Q00056 Y_RNA.772-201ENST00000606692 102 ntBASIC2.79□□□□□ -1.96
HOXA4Q00056 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC2.79□□□□□ -1.96
HOXA4Q00056 AC137590.2-201ENST00000619709 240 ntBASIC2.79□□□□□ -1.96
HOXA4Q00056 U6.104-201ENST00000637979 90 ntBASIC2.79□□□□□ -1.96
HOXA4Q00056 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC2.79□□□□□ -1.96
HOXA4Q00056 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC2.79□□□□□ -1.96
HOXA4Q00056 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC2.79□□□□□ -1.96
HOXA4Q00056 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.79□□□□□ -1.96
HOXA4Q00056 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC2.78□□□□□ -1.96
HOXA4Q00056 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
HOXA4Q00056 LINC02555-201ENST00000563933 1951 ntBASIC2.78□□□□□ -1.96
HOXA4Q00056 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC2.78□□□□□ -1.96
HOXA4Q00056 AL079305.1-201ENST00000623159 3008 ntBASIC2.78□□□□□ -1.96
HOXA4Q00056 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC2.78□□□□□ -1.96
HOXA4Q00056 AC007496.3-201ENST00000624987 3443 ntBASIC2.78□□□□□ -1.96
HOXA4Q00056 RNU6-212P-201ENST00000362642 104 ntBASIC2.78□□□□□ -1.96
HOXA4Q00056 Y_RNA.40-201ENST00000362645 93 ntBASIC2.78□□□□□ -1.96
HOXA4Q00056 RNA5SP295-201ENST00000362655 121 ntBASIC2.78□□□□□ -1.96
HOXA4Q00056 RNA5SP387-201ENST00000364226 106 ntBASIC2.78□□□□□ -1.96
HOXA4Q00056 RNU6-748P-201ENST00000384648 107 ntBASIC2.78□□□□□ -1.96
HOXA4Q00056 MIR7-3-201ENST00000384898 110 ntBASIC2.78□□□□□ -1.96
HOXA4Q00056 U3.19-201ENST00000390893 196 ntBASIC2.78□□□□□ -1.96
HOXA4Q00056 SNORA26.3-201ENST00000391119 136 ntBASIC2.78□□□□□ -1.96
HOXA4Q00056 EI24P2-201ENST00000397776 1076 ntBASIC2.78□□□□□ -1.96
HOXA4Q00056 AL357075.1-201ENST00000404107 726 ntBASIC2.78□□□□□ -1.96
HOXA4Q00056 SNORD12B-201ENST00000410433 91 ntBASIC2.78□□□□□ -1.96
HOXA4Q00056 AC138623.1-201ENST00000418060 216 ntBASIC2.78□□□□□ -1.96
HOXA4Q00056 AL358075.3-201ENST00000426289 226 ntBASIC2.78□□□□□ -1.96
HOXA4Q00056 ATP6V0E1P4-201ENST00000427294 242 ntBASIC2.78□□□□□ -1.96
HOXA4Q00056 AC005326.1-201ENST00000429197 123 ntBASIC2.78□□□□□ -1.96
HOXA4Q00056 CEACAMP4-201ENST00000457676 421 ntBASIC2.78□□□□□ -1.96
HOXA4Q00056 CENPBD1P1-201ENST00000464061 469 ntBASIC2.78□□□□□ -1.96
HOXA4Q00056 AIG1P1-201ENST00000503376 148 ntBASIC2.78□□□□□ -1.96
HOXA4Q00056 SNORA31.21-201ENST00000517180 77 ntBASIC2.78□□□□□ -1.96
HOXA4Q00056 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC2.78□□□□□ -1.96
HOXA4Q00056 AC025281.1-201ENST00000567026 265 ntBASIC2.78□□□□□ -1.96
HOXA4Q00056 RPS15AP11-201ENST00000594193 385 ntBASIC2.78□□□□□ -1.96
HOXA4Q00056 AP001282.2-201ENST00000616149 309 ntBASIC2.78□□□□□ -1.96
HOXA4Q00056 MIR376A1-201ENST00000616574 68 ntBASIC2.78□□□□□ -1.96
HOXA4Q00056 MIR7153-201ENST00000637758 57 ntBASIC2.78□□□□□ -1.96
HOXA4Q00056 AL136164.4-201ENST00000625013 2135 ntBASIC2.78□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 91.8 ms