Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC131159.1-201ENST00000621854 213 ntBASIC0.36□□□□□ -2.35
FOXA3P55318 AC091948.2-201ENST00000636510 279 ntBASIC0.36□□□□□ -2.35
FOXA3P55318 RNU6-527P-201ENST00000363425 104 ntBASIC0.35□□□□□ -2.35
FOXA3P55318 RNU6-511P-201ENST00000363496 107 ntBASIC0.35□□□□□ -2.35
FOXA3P55318 Y_RNA.192-201ENST00000363977 102 ntBASIC0.35□□□□□ -2.35
FOXA3P55318 Y_RNA.472-201ENST00000384322 102 ntBASIC0.35□□□□□ -2.35
FOXA3P55318 MIR578-201ENST00000384828 96 ntBASIC0.35□□□□□ -2.35
FOXA3P55318 MIR10B-201ENST00000385011 110 ntBASIC0.35□□□□□ -2.35
FOXA3P55318 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC0.35□□□□□ -2.35
FOXA3P55318 RNU2-62P-201ENST00000410868 191 ntBASIC0.35□□□□□ -2.35
FOXA3P55318 AC011891.1-201ENST00000437088 432 ntTSL 3 BASIC0.35□□□□□ -2.35
FOXA3P55318 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC0.35□□□□□ -2.35
FOXA3P55318 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC0.35□□□□□ -2.35
FOXA3P55318 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC0.35□□□□□ -2.35
FOXA3P55318 KRTAP13-6P-201ENST00000508999 371 ntBASIC0.35□□□□□ -2.35
FOXA3P55318 AC109445.1-201ENST00000512356 383 ntBASIC0.35□□□□□ -2.35
FOXA3P55318 SUMO2P16-201ENST00000519475 264 ntBASIC0.35□□□□□ -2.35
FOXA3P55318 AP002453.2-201ENST00000533503 320 ntBASIC0.35□□□□□ -2.35
FOXA3P55318 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC0.35□□□□□ -2.35
FOXA3P55318 AC021231.3-201ENST00000558497 370 ntBASIC0.35□□□□□ -2.35
FOXA3P55318 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC0.35□□□□□ -2.35
FOXA3P55318 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC0.35□□□□□ -2.35
FOXA3P55318 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC0.35□□□□□ -2.35
FOXA3P55318 MIR548AC-201ENST00000585049 88 ntBASIC0.35□□□□□ -2.35
FOXA3P55318 AL034555.1-201ENST00000604816 211 ntBASIC0.35□□□□□ -2.35
FOXA3P55318 AC105148.1-201ENST00000604961 409 ntBASIC0.35□□□□□ -2.35
FOXA3P55318 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC0.35□□□□□ -2.35
FOXA3P55318 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC0.35□□□□□ -2.35
FOXA3P55318 DLEU1_2.1-201ENST00000617920 342 ntBASIC0.35□□□□□ -2.35
FOXA3P55318 AC026585.1-201ENST00000619582 524 ntBASIC0.35□□□□□ -2.35
FOXA3P55318 RMST_7.1-201ENST00000621935 268 ntBASIC0.35□□□□□ -2.35
FOXA3P55318 AP002782.1-201ENST00000623107 614 ntBASIC0.35□□□□□ -2.35
FOXA3P55318 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC0.35□□□□□ -2.35
FOXA3P55318 AC106858.1-201ENST00000637497 429 ntBASIC0.35□□□□□ -2.35
FOXA3P55318 AC023934.1-201ENST00000574529 2389 ntBASIC0.35□□□□□ -2.35
FOXA3P55318 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.34□□□□□ -2.35
FOXA3P55318 RNU6-78P-201ENST00000362897 107 ntBASIC0.34□□□□□ -2.36
FOXA3P55318 RNU6-960P-201ENST00000364056 120 ntBASIC0.34□□□□□ -2.36
FOXA3P55318 RNY4P16-201ENST00000364768 94 ntBASIC0.34□□□□□ -2.36
FOXA3P55318 RNU6-723P-201ENST00000383973 107 ntBASIC0.34□□□□□ -2.36
FOXA3P55318 RNU4-22P-201ENST00000411058 166 ntBASIC0.34□□□□□ -2.36
FOXA3P55318 RPS3AP37-201ENST00000419176 745 ntBASIC0.34□□□□□ -2.36
FOXA3P55318 USP9YP14-201ENST00000430663 563 ntBASIC0.34□□□□□ -2.36
FOXA3P55318 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC0.34□□□□□ -2.36
FOXA3P55318 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC0.34□□□□□ -2.36
FOXA3P55318 RNA5SP384-201ENST00000516615 116 ntBASIC0.34□□□□□ -2.36
FOXA3P55318 HSPE1P4-201ENST00000550617 308 ntBASIC0.34□□□□□ -2.36
FOXA3P55318 AC087883.1-201ENST00000551882 391 ntBASIC0.34□□□□□ -2.36
FOXA3P55318 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC0.34□□□□□ -2.36
FOXA3P55318 CYP3A137P-201ENST00000562436 69 ntBASIC0.34□□□□□ -2.36
FOXA3P55318 AC009712.1-201ENST00000564938 316 ntBASIC0.34□□□□□ -2.36
FOXA3P55318 AC091489.2-201ENST00000566263 604 ntBASIC0.34□□□□□ -2.36
FOXA3P55318 AC072039.2-201ENST00000608883 439 ntBASIC0.34□□□□□ -2.36
FOXA3P55318 AC126544.2-201ENST00000625174 749 ntBASIC0.34□□□□□ -2.36
FOXA3P55318 SNORA63.3-201ENST00000362682 132 ntBASIC0.33□□□□□ -2.36
FOXA3P55318 RNU6-1285P-201ENST00000363480 105 ntBASIC0.33□□□□□ -2.36
FOXA3P55318 SNORD18A-201ENST00000363753 72 ntBASIC0.33□□□□□ -2.36
FOXA3P55318 SNORA32.2-201ENST00000384049 122 ntBASIC0.33□□□□□ -2.36
FOXA3P55318 RNU6-413P-201ENST00000384115 107 ntBASIC0.33□□□□□ -2.36
FOXA3P55318 SNORD116-12-201ENST00000384468 92 ntBASIC0.33□□□□□ -2.36
FOXA3P55318 MIR942-201ENST00000401111 86 ntBASIC0.33□□□□□ -2.36
FOXA3P55318 AL136310.1-201ENST00000404926 654 ntBASIC0.33□□□□□ -2.36
FOXA3P55318 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC0.33□□□□□ -2.36
FOXA3P55318 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC0.33□□□□□ -2.36
FOXA3P55318 ISCA1P6-201ENST00000427740 390 ntBASIC0.33□□□□□ -2.36
FOXA3P55318 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC0.33□□□□□ -2.36
FOXA3P55318 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC0.33□□□□□ -2.36
FOXA3P55318 MTCYBP1-201ENST00000454315 1119 ntBASIC0.33□□□□□ -2.36
FOXA3P55318 RNU7-14P-201ENST00000459331 62 ntBASIC0.33□□□□□ -2.36
FOXA3P55318 AC116353.3-201ENST00000511215 249 ntBASIC0.33□□□□□ -2.36
FOXA3P55318 SNORD79.1-201ENST00000516069 84 ntBASIC0.33□□□□□ -2.36
FOXA3P55318 RNU1-86P-201ENST00000516108 154 ntBASIC0.33□□□□□ -2.36
FOXA3P55318 RNA5SP216-201ENST00000516111 123 ntBASIC0.33□□□□□ -2.36
FOXA3P55318 RNA5SP255-201ENST00000516370 107 ntBASIC0.33□□□□□ -2.36
FOXA3P55318 RNU1-107P-201ENST00000516617 154 ntBASIC0.33□□□□□ -2.36
FOXA3P55318 AC115990.1-201ENST00000526957 301 ntBASIC0.33□□□□□ -2.36
FOXA3P55318 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC0.33□□□□□ -2.36
FOXA3P55318 AC092451.2-201ENST00000538746 658 ntBASIC0.33□□□□□ -2.36
FOXA3P55318 AC123904.2-201ENST00000548059 300 ntBASIC0.33□□□□□ -2.36
FOXA3P55318 ZNF321P-202ENST00000550843 495 ntBASIC0.33□□□□□ -2.36
FOXA3P55318 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC0.33□□□□□ -2.36
FOXA3P55318 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC0.33□□□□□ -2.36
FOXA3P55318 MTND4LP25-201ENST00000570218 163 ntBASIC0.33□□□□□ -2.36
FOXA3P55318 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC0.33□□□□□ -2.36
FOXA3P55318 FAM106DP-201ENST00000586416 501 ntBASIC0.33□□□□□ -2.36
FOXA3P55318 AC136443.5-201ENST00000603741 370 ntBASIC0.33□□□□□ -2.36
FOXA3P55318 RNU6-88P-201ENST00000606801 100 ntBASIC0.33□□□□□ -2.36
FOXA3P55318 AP001596.2-201ENST00000608410 312 ntBASIC0.33□□□□□ -2.36
FOXA3P55318 AL359547.2-201ENST00000615810 418 ntBASIC0.33□□□□□ -2.36
FOXA3P55318 AC126177.8-201ENST00000618339 1015 ntBASIC0.33□□□□□ -2.36
FOXA3P55318 SNORD98-201ENST00000636377 67 ntBASIC0.33□□□□□ -2.36
FOXA3P55318 OR4G1P-203ENST00000641984 1631 ntBASIC0.32□□□□□ -2.36
FOXA3P55318 Y_RNA.46-201ENST00000362695 102 ntBASIC0.32□□□□□ -2.36
FOXA3P55318 RNU6-1054P-201ENST00000411293 104 ntBASIC0.32□□□□□ -2.36
FOXA3P55318 RNA5SP111-201ENST00000411386 101 ntBASIC0.32□□□□□ -2.36
FOXA3P55318 AC114491.1-201ENST00000416095 246 ntBASIC0.32□□□□□ -2.36
FOXA3P55318 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC0.32□□□□□ -2.36
FOXA3P55318 AC007327.1-201ENST00000447461 264 ntBASIC0.32□□□□□ -2.36
FOXA3P55318 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC0.32□□□□□ -2.36
FOXA3P55318 RNU7-34P-201ENST00000459394 64 ntBASIC0.32□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 122.4 ms