Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC3.9□□□□□ -1.79
LIG3P49916 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC3.9□□□□□ -1.79
LIG3P49916 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
LIG3P49916 MIR4643-201ENST00000577473 78 ntBASIC3.9□□□□□ -1.79
LIG3P49916 MIR3923-201ENST00000579521 83 ntBASIC3.9□□□□□ -1.79
LIG3P49916 AC012493.2-201ENST00000595083 291 ntBASIC3.9□□□□□ -1.79
LIG3P49916 AL034555.1-201ENST00000604816 211 ntBASIC3.9□□□□□ -1.79
LIG3P49916 AC012531.5-201ENST00000611375 151 ntBASIC3.9□□□□□ -1.79
LIG3P49916 AC006001.4-201ENST00000622243 395 ntBASIC3.9□□□□□ -1.79
LIG3P49916 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
LIG3P49916 MTND5P35-201ENST00000557537 1720 ntBASIC3.9□□□□□ -1.79
LIG3P49916 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
LIG3P49916 Y_RNA.83-201ENST00000363005 113 ntBASIC3.89□□□□□ -1.79
LIG3P49916 SNORD114-19-201ENST00000363072 75 ntBASIC3.89□□□□□ -1.79
LIG3P49916 RNU6-283P-201ENST00000364788 107 ntBASIC3.89□□□□□ -1.79
LIG3P49916 RNU6-793P-201ENST00000384233 104 ntBASIC3.89□□□□□ -1.79
LIG3P49916 RPL23AP36-201ENST00000413895 458 ntBASIC3.89□□□□□ -1.79
LIG3P49916 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC3.89□□□□□ -1.79
LIG3P49916 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC3.89□□□□□ -1.79
LIG3P49916 UQCRBP2-201ENST00000447827 297 ntBASIC3.89□□□□□ -1.79
LIG3P49916 NDUFB4P10-201ENST00000452541 359 ntBASIC3.89□□□□□ -1.79
LIG3P49916 SNRPGP3-201ENST00000469405 227 ntBASIC3.89□□□□□ -1.79
LIG3P49916 AL049830.2-201ENST00000480072 201 ntBASIC3.89□□□□□ -1.79
LIG3P49916 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC3.89□□□□□ -1.79
LIG3P49916 AC074133.1-201ENST00000515696 183 ntBASIC3.89□□□□□ -1.79
LIG3P49916 RNU1-45P-201ENST00000517191 141 ntBASIC3.89□□□□□ -1.79
LIG3P49916 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC3.89□□□□□ -1.79
LIG3P49916 AC233702.2-202ENST00000562547 291 ntBASIC3.89□□□□□ -1.79
LIG3P49916 AC005520.5-201ENST00000613926 164 ntBASIC3.89□□□□□ -1.79
LIG3P49916 AC004792.1-201ENST00000614523 137 ntBASIC3.89□□□□□ -1.79
LIG3P49916 AL357075.2-201ENST00000614906 189 ntBASIC3.89□□□□□ -1.79
LIG3P49916 FTX_2.1-201ENST00000618816 94 ntBASIC3.89□□□□□ -1.79
LIG3P49916 IGHVIII-44-202ENST00000636235 289 ntBASIC3.89□□□□□ -1.79
LIG3P49916 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
LIG3P49916 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC3.89□□□□□ -1.79
LIG3P49916 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.89□□□□□ -1.79
LIG3P49916 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC3.89□□□□□ -1.79
LIG3P49916 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC3.88□□□□□ -1.79
LIG3P49916 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
LIG3P49916 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
LIG3P49916 Y_RNA.331-201ENST00000365267 102 ntBASIC3.88□□□□□ -1.79
LIG3P49916 SNORD6-201ENST00000365444 73 ntBASIC3.88□□□□□ -1.79
LIG3P49916 MIR554-201ENST00000384874 96 ntBASIC3.88□□□□□ -1.79
LIG3P49916 SNORA3.3-201ENST00000408712 125 ntBASIC3.88□□□□□ -1.79
LIG3P49916 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC3.88□□□□□ -1.79
LIG3P49916 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC3.88□□□□□ -1.79
LIG3P49916 RNU6-625P-201ENST00000459412 107 ntBASIC3.88□□□□□ -1.79
LIG3P49916 RN7SL542P-201ENST00000467147 294 ntBASIC3.88□□□□□ -1.79
LIG3P49916 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.88□□□□□ -1.79
LIG3P49916 RN7SKP40-201ENST00000517211 242 ntBASIC3.88□□□□□ -1.79
LIG3P49916 AC023632.4-201ENST00000517783 191 ntBASIC3.88□□□□□ -1.79
LIG3P49916 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.88□□□□□ -1.79
LIG3P49916 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC3.88□□□□□ -1.79
LIG3P49916 AL162424.1-201ENST00000602325 221 ntBASIC3.88□□□□□ -1.79
LIG3P49916 AC069200.1-201ENST00000609511 323 ntBASIC3.88□□□□□ -1.79
LIG3P49916 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC3.88□□□□□ -1.79
LIG3P49916 MIR7153-201ENST00000637758 57 ntBASIC3.88□□□□□ -1.79
LIG3P49916 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.88□□□□□ -1.79
LIG3P49916 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.88□□□□□ -1.79
LIG3P49916 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
LIG3P49916 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
LIG3P49916 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
LIG3P49916 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
LIG3P49916 RNA5SP295-201ENST00000362655 121 ntBASIC3.87□□□□□ -1.79
LIG3P49916 RNU6-799P-201ENST00000363567 107 ntBASIC3.87□□□□□ -1.79
LIG3P49916 Y_RNA.199-201ENST00000364014 102 ntBASIC3.87□□□□□ -1.79
LIG3P49916 Y_RNA.270-201ENST00000364693 104 ntBASIC3.87□□□□□ -1.79
LIG3P49916 SNORA72.2-201ENST00000365028 127 ntBASIC3.87□□□□□ -1.79
LIG3P49916 RNA5SP252-201ENST00000391131 119 ntBASIC3.87□□□□□ -1.79
LIG3P49916 RNU6ATAC34P-201ENST00000408879 121 ntBASIC3.87□□□□□ -1.79
LIG3P49916 RN7SKP156-201ENST00000410308 342 ntBASIC3.87□□□□□ -1.79
LIG3P49916 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.87□□□□□ -1.79
LIG3P49916 SETP5-201ENST00000437270 562 ntBASIC3.87□□□□□ -1.79
LIG3P49916 POLR2KP2-201ENST00000438155 177 ntBASIC3.87□□□□□ -1.79
LIG3P49916 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC3.87□□□□□ -1.79
LIG3P49916 snoU13.14-201ENST00000459372 104 ntBASIC3.87□□□□□ -1.79
LIG3P49916 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC3.87□□□□□ -1.79
LIG3P49916 AC110768.1-201ENST00000509222 400 ntBASIC3.87□□□□□ -1.79
LIG3P49916 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC3.87□□□□□ -1.79
LIG3P49916 SNORA31.21-201ENST00000517180 77 ntBASIC3.87□□□□□ -1.79
LIG3P49916 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC3.87□□□□□ -1.79
LIG3P49916 AC025281.1-201ENST00000567026 265 ntBASIC3.87□□□□□ -1.79
LIG3P49916 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC3.87□□□□□ -1.79
LIG3P49916 MIR1254-2-201ENST00000579553 63 ntBASIC3.87□□□□□ -1.79
LIG3P49916 AC008749.1-201ENST00000597650 306 ntBASIC3.87□□□□□ -1.79
LIG3P49916 AL391813.1-201ENST00000603098 260 ntBASIC3.87□□□□□ -1.79
LIG3P49916 MZT1P2-201ENST00000604387 248 ntBASIC3.87□□□□□ -1.79
LIG3P49916 SNRPGP20-201ENST00000604477 205 ntBASIC3.87□□□□□ -1.79
LIG3P49916 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.86□□□□□ -1.79
LIG3P49916 AL109809.4-201ENST00000603520 2185 ntBASIC3.86□□□□□ -1.79
LIG3P49916 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC3.86□□□□□ -1.79
LIG3P49916 RNA5SP197-201ENST00000363357 119 ntBASIC3.86□□□□□ -1.79
LIG3P49916 SNORA46.1-201ENST00000391069 153 ntBASIC3.86□□□□□ -1.79
LIG3P49916 AL512633.1-201ENST00000399931 655 ntBASIC3.86□□□□□ -1.79
LIG3P49916 CBX3P9-201ENST00000402326 552 ntBASIC3.86□□□□□ -1.79
LIG3P49916 RN7SKP27-201ENST00000410684 333 ntBASIC3.86□□□□□ -1.79
LIG3P49916 Y_RNA.793-201ENST00000411222 111 ntBASIC3.86□□□□□ -1.79
LIG3P49916 ARF4P2-201ENST00000430209 526 ntBASIC3.86□□□□□ -1.79
LIG3P49916 AL445584.1-201ENST00000431451 330 ntBASIC3.86□□□□□ -1.79
LIG3P49916 SNORA31.1-201ENST00000515993 133 ntBASIC3.86□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 106.4 ms