Protein–RNA interactions for Protein: P43246

MSH2, DNA mismatch repair protein Msh2, humanhuman

Predictions only

Length 934 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2P43246 AC012640.5-201ENST00000623897 319 ntBASIC2.48□□□□□ -2.01
MSH2P43246 MIR21-201ENST00000362134 72 ntBASIC2.47□□□□□ -2.01
MSH2P43246 RNU6-655P-201ENST00000362858 107 ntBASIC2.47□□□□□ -2.01
MSH2P43246 RNU6-1210P-201ENST00000363775 107 ntBASIC2.47□□□□□ -2.01
MSH2P43246 RNU1-51P-201ENST00000365345 176 ntBASIC2.47□□□□□ -2.01
MSH2P43246 RNA5SP184-201ENST00000411071 108 ntBASIC2.47□□□□□ -2.01
MSH2P43246 RPL23AP95-201ENST00000426806 265 ntBASIC2.47□□□□□ -2.01
MSH2P43246 PPP1R2P5-201ENST00000457256 603 ntBASIC2.47□□□□□ -2.01
MSH2P43246 SNRPGP7-201ENST00000469016 106 ntBASIC2.47□□□□□ -2.01
MSH2P43246 LIAS-206ENST00000513731 826 ntTSL 5 BASIC2.47□□□□□ -2.01
MSH2P43246 RNU7-193P-201ENST00000516723 65 ntBASIC2.47□□□□□ -2.01
MSH2P43246 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC2.47□□□□□ -2.01
MSH2P43246 AC093249.1-201ENST00000567049 203 ntBASIC2.47□□□□□ -2.01
MSH2P43246 RPS3AP23-202ENST00000574601 686 ntBASIC2.47□□□□□ -2.01
MSH2P43246 AL161423.1-201ENST00000613700 262 ntBASIC2.47□□□□□ -2.01
MSH2P43246 AC092608.2-201ENST00000624427 218 ntBASIC2.47□□□□□ -2.01
MSH2P43246 AC007336.1-201ENST00000576365 3828 ntBASIC2.47□□□□□ -2.01
MSH2P43246 ZNF720P1-201ENST00000562403 1939 ntBASIC2.46□□□□□ -2.02
MSH2P43246 RNU6-845P-201ENST00000362578 103 ntBASIC2.46□□□□□ -2.02
MSH2P43246 RNU6-227P-201ENST00000362865 103 ntBASIC2.46□□□□□ -2.02
MSH2P43246 U3.13-201ENST00000364804 214 ntBASIC2.46□□□□□ -2.02
MSH2P43246 MIR144-201ENST00000384886 86 ntBASIC2.46□□□□□ -2.02
MSH2P43246 RN7SKP32-201ENST00000410167 303 ntBASIC2.46□□□□□ -2.02
MSH2P43246 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC2.46□□□□□ -2.02
MSH2P43246 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC2.46□□□□□ -2.02
MSH2P43246 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC2.46□□□□□ -2.02
MSH2P43246 USP9YP8-201ENST00000441913 500 ntBASIC2.46□□□□□ -2.02
MSH2P43246 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC2.46□□□□□ -2.02
MSH2P43246 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC2.46□□□□□ -2.02
MSH2P43246 RPS29P27-201ENST00000463711 170 ntBASIC2.46□□□□□ -2.02
MSH2P43246 RPL30P1-201ENST00000488676 339 ntBASIC2.46□□□□□ -2.02
MSH2P43246 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC2.46□□□□□ -2.02
MSH2P43246 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC2.46□□□□□ -2.02
MSH2P43246 AC115990.1-201ENST00000526957 301 ntBASIC2.46□□□□□ -2.02
MSH2P43246 AP005639.2-201ENST00000527592 928 ntBASIC2.46□□□□□ -2.02
MSH2P43246 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC2.46□□□□□ -2.02
MSH2P43246 MIR3126-201ENST00000577443 74 ntBASIC2.46□□□□□ -2.02
MSH2P43246 AL133215.3-201ENST00000609801 448 ntBASIC2.46□□□□□ -2.02
MSH2P43246 AC022306.2-201ENST00000617563 647 ntBASIC2.46□□□□□ -2.02
MSH2P43246 U4.3-201ENST00000621047 82 ntBASIC2.46□□□□□ -2.02
MSH2P43246 AC005858.4-201ENST00000623191 700 ntBASIC2.46□□□□□ -2.02
MSH2P43246 AC090517.3-201ENST00000625170 141 ntBASIC2.46□□□□□ -2.02
MSH2P43246 AL133216.2-202ENST00000634512 349 ntBASIC2.46□□□□□ -2.02
MSH2P43246 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.46□□□□□ -2.02
MSH2P43246 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
MSH2P43246 AC062016.1-201ENST00000355719 319 ntBASIC2.45□□□□□ -2.02
MSH2P43246 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC2.45□□□□□ -2.02
MSH2P43246 Y_RNA.88-201ENST00000363029 99 ntBASIC2.45□□□□□ -2.02
MSH2P43246 Y_RNA.111-201ENST00000363248 100 ntBASIC2.45□□□□□ -2.02
MSH2P43246 Y_RNA.151-201ENST00000363566 112 ntBASIC2.45□□□□□ -2.02
MSH2P43246 Y_RNA.166-201ENST00000363730 102 ntBASIC2.45□□□□□ -2.02
MSH2P43246 MIR95-201ENST00000385072 81 ntBASIC2.45□□□□□ -2.02
MSH2P43246 MIR27B-201ENST00000385129 97 ntBASIC2.45□□□□□ -2.02
MSH2P43246 MIR561-201ENST00000385216 97 ntBASIC2.45□□□□□ -2.02
MSH2P43246 BTF3L4P2-201ENST00000392798 346 ntBASIC2.45□□□□□ -2.02
MSH2P43246 CBX3P9-201ENST00000402326 552 ntBASIC2.45□□□□□ -2.02
MSH2P43246 AL591034.2-201ENST00000402839 359 ntBASIC2.45□□□□□ -2.02
MSH2P43246 SNORD23.1-201ENST00000408212 104 ntBASIC2.45□□□□□ -2.02
MSH2P43246 RN7SKP61-201ENST00000410642 295 ntBASIC2.45□□□□□ -2.02
MSH2P43246 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC2.45□□□□□ -2.02
MSH2P43246 MTND3P9-201ENST00000429526 346 ntBASIC2.45□□□□□ -2.02
MSH2P43246 AC098614.3-201ENST00000438957 440 ntBASIC2.45□□□□□ -2.02
MSH2P43246 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC2.45□□□□□ -2.02
MSH2P43246 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC2.45□□□□□ -2.02
MSH2P43246 MTND1P17-201ENST00000448961 204 ntBASIC2.45□□□□□ -2.02
MSH2P43246 MTND3P10-201ENST00000450967 341 ntBASIC2.45□□□□□ -2.02
MSH2P43246 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC2.45□□□□□ -2.02
MSH2P43246 AC114801.2-201ENST00000503825 781 ntBASIC2.45□□□□□ -2.02
MSH2P43246 AC091874.1-201ENST00000511402 339 ntBASIC2.45□□□□□ -2.02
MSH2P43246 SNORA4.4-201ENST00000515921 135 ntBASIC2.45□□□□□ -2.02
MSH2P43246 RNU7-30P-201ENST00000516835 62 ntBASIC2.45□□□□□ -2.02
MSH2P43246 SNORA48.11-201ENST00000517015 89 ntBASIC2.45□□□□□ -2.02
MSH2P43246 RNU6-586P-201ENST00000517265 104 ntBASIC2.45□□□□□ -2.02
MSH2P43246 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.45□□□□□ -2.02
MSH2P43246 HSPE1P4-201ENST00000550617 308 ntBASIC2.45□□□□□ -2.02
MSH2P43246 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC2.45□□□□□ -2.02
MSH2P43246 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.45□□□□□ -2.02
MSH2P43246 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.44□□□□□ -2.02
MSH2P43246 Y_RNA.303-201ENST00000364998 94 ntBASIC2.44□□□□□ -2.02
MSH2P43246 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
MSH2P43246 RNU6-933P-201ENST00000384424 107 ntBASIC2.44□□□□□ -2.02
MSH2P43246 PDCL2P1-201ENST00000419302 352 ntBASIC2.44□□□□□ -2.02
MSH2P43246 AC078809.1-201ENST00000427601 140 ntBASIC2.44□□□□□ -2.02
MSH2P43246 AL133396.1-201ENST00000432048 687 ntBASIC2.44□□□□□ -2.02
MSH2P43246 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC2.44□□□□□ -2.02
MSH2P43246 PTP4A1P4-201ENST00000512479 322 ntBASIC2.44□□□□□ -2.02
MSH2P43246 RNU5F-2P-201ENST00000516066 82 ntBASIC2.44□□□□□ -2.02
MSH2P43246 Y_RNA.682-201ENST00000516457 100 ntBASIC2.44□□□□□ -2.02
MSH2P43246 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC2.44□□□□□ -2.02
MSH2P43246 MYL12BP1-201ENST00000569826 507 ntBASIC2.44□□□□□ -2.02
MSH2P43246 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC2.44□□□□□ -2.02
MSH2P43246 AL670379.2-201ENST00000604983 252 ntBASIC2.44□□□□□ -2.02
MSH2P43246 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
MSH2P43246 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC2.44□□□□□ -2.02
MSH2P43246 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.44□□□□□ -2.02
MSH2P43246 AP000560.1-201ENST00000624150 1937 ntBASIC2.44□□□□□ -2.02
MSH2P43246 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.44□□□□□ -2.02
MSH2P43246 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
MSH2P43246 AC009541.1-201ENST00000438279 2662 ntBASIC2.43□□□□□ -2.02
MSH2P43246 RNU1-23P-201ENST00000363361 144 ntBASIC2.43□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms