Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 MIR1289-1-201ENST00000408836 144 ntBASIC2.55□□□□□ -2
HOXD3P31249 COTL1P1-201ENST00000422309 375 ntBASIC2.55□□□□□ -2
HOXD3P31249 ELOCP20-201ENST00000422460 345 ntBASIC2.55□□□□□ -2
HOXD3P31249 AC009414.1-201ENST00000427200 443 ntBASIC2.55□□□□□ -2
HOXD3P31249 AC244670.1-201ENST00000436879 112 ntBASIC2.55□□□□□ -2
HOXD3P31249 DYNLT3P2-201ENST00000442517 295 ntBASIC2.55□□□□□ -2
HOXD3P31249 GPM6BP3-201ENST00000442797 145 ntBASIC2.55□□□□□ -2
HOXD3P31249 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC2.55□□□□□ -2
HOXD3P31249 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC2.55□□□□□ -2
HOXD3P31249 AP000705.1-201ENST00000454567 350 ntBASIC2.55□□□□□ -2
HOXD3P31249 RPL23AP94-201ENST00000512518 302 ntBASIC2.55□□□□□ -2
HOXD3P31249 SNORA31.16-201ENST00000516773 139 ntBASIC2.55□□□□□ -2
HOXD3P31249 Y_RNA.706-201ENST00000516933 99 ntBASIC2.55□□□□□ -2
HOXD3P31249 SNORA31.21-201ENST00000517180 77 ntBASIC2.55□□□□□ -2
HOXD3P31249 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC2.55□□□□□ -2
HOXD3P31249 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC2.55□□□□□ -2
HOXD3P31249 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC2.55□□□□□ -2
HOXD3P31249 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC2.55□□□□□ -2
HOXD3P31249 MIR3149-201ENST00000584629 83 ntBASIC2.55□□□□□ -2
HOXD3P31249 AL078605.1-201ENST00000603529 500 ntBASIC2.55□□□□□ -2
HOXD3P31249 Z98751.3-201ENST00000604447 521 ntBASIC2.55□□□□□ -2
HOXD3P31249 AL021879.1-201ENST00000611756 288 ntBASIC2.55□□□□□ -2
HOXD3P31249 AL359198.2-201ENST00000611836 194 ntBASIC2.55□□□□□ -2
HOXD3P31249 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC2.55□□□□□ -2
HOXD3P31249 SCARNA4-201ENST00000629045 128 ntBASIC2.55□□□□□ -2
HOXD3P31249 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC2.55□□□□□ -2
HOXD3P31249 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC2.55□□□□□ -2
HOXD3P31249 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC2.54□□□□□ -2
HOXD3P31249 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC2.54□□□□□ -2
HOXD3P31249 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
HOXD3P31249 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC2.54□□□□□ -2
HOXD3P31249 RNU6-1285P-201ENST00000363480 105 ntBASIC2.54□□□□□ -2
HOXD3P31249 Y_RNA.149-201ENST00000363558 117 ntBASIC2.54□□□□□ -2
HOXD3P31249 Y_RNA.214-201ENST00000364201 112 ntBASIC2.54□□□□□ -2
HOXD3P31249 RNU6-17P-201ENST00000384245 107 ntBASIC2.54□□□□□ -2
HOXD3P31249 RNU6-18P-201ENST00000384527 107 ntBASIC2.54□□□□□ -2
HOXD3P31249 RNU6-1222P-201ENST00000384615 107 ntBASIC2.54□□□□□ -2
HOXD3P31249 MIR628-201ENST00000385229 95 ntBASIC2.54□□□□□ -2
HOXD3P31249 RPL21P75-201ENST00000396599 483 ntBASIC2.54□□□□□ -2
HOXD3P31249 RPL21P28-201ENST00000401418 483 ntBASIC2.54□□□□□ -2
HOXD3P31249 MTCYBP2-201ENST00000407745 171 ntBASIC2.54□□□□□ -2
HOXD3P31249 RNA5SP390-201ENST00000410191 113 ntBASIC2.54□□□□□ -2
HOXD3P31249 EIF1AXP1-201ENST00000419267 435 ntBASIC2.54□□□□□ -2
HOXD3P31249 AL590556.1-201ENST00000423231 483 ntBASIC2.54□□□□□ -2
HOXD3P31249 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC2.54□□□□□ -2
HOXD3P31249 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC2.54□□□□□ -2
HOXD3P31249 RPS4XP2-201ENST00000458402 793 ntBASIC2.54□□□□□ -2
HOXD3P31249 RPL21P39-201ENST00000463605 483 ntBASIC2.54□□□□□ -2
HOXD3P31249 AC087190.1-201ENST00000484462 480 ntBASIC2.54□□□□□ -2
HOXD3P31249 AC107032.1-201ENST00000485945 480 ntBASIC2.54□□□□□ -2
HOXD3P31249 AC132942.1-201ENST00000486753 483 ntBASIC2.54□□□□□ -2
HOXD3P31249 AC092185.1-201ENST00000491371 97 ntBASIC2.54□□□□□ -2
HOXD3P31249 AC093591.1-201ENST00000491435 481 ntBASIC2.54□□□□□ -2
HOXD3P31249 RPL21P16-201ENST00000495531 483 ntBASIC2.54□□□□□ -2
HOXD3P31249 AC010469.2-201ENST00000496412 480 ntBASIC2.54□□□□□ -2
HOXD3P31249 ANXA2P1-201ENST00000505539 926 ntBASIC2.54□□□□□ -2
HOXD3P31249 SNORA25.11-201ENST00000515935 105 ntBASIC2.54□□□□□ -2
HOXD3P31249 RNU5B-3P-201ENST00000516601 115 ntBASIC2.54□□□□□ -2
HOXD3P31249 SNORD19.2-201ENST00000516978 73 ntBASIC2.54□□□□□ -2
HOXD3P31249 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC2.54□□□□□ -2
HOXD3P31249 EIF4BP1-201ENST00000554881 351 ntBASIC2.54□□□□□ -2
HOXD3P31249 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC2.54□□□□□ -2
HOXD3P31249 AC025281.1-201ENST00000567026 265 ntBASIC2.54□□□□□ -2
HOXD3P31249 AC090517.1-201ENST00000569307 266 ntBASIC2.54□□□□□ -2
HOXD3P31249 LARP7P3-201ENST00000579888 337 ntBASIC2.54□□□□□ -2
HOXD3P31249 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC2.54□□□□□ -2
HOXD3P31249 AL355297.3-201ENST00000604082 446 ntBASIC2.54□□□□□ -2
HOXD3P31249 RAC1P9-201ENST00000604990 392 ntBASIC2.54□□□□□ -2
HOXD3P31249 AC073657.2-201ENST00000605661 303 ntBASIC2.54□□□□□ -2
HOXD3P31249 AL159153.1-201ENST00000619688 317 ntBASIC2.54□□□□□ -2
HOXD3P31249 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC2.54□□□□□ -2
HOXD3P31249 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC2.54□□□□□ -2
HOXD3P31249 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
HOXD3P31249 AC058791.1-201ENST00000608412 3198 ntBASIC2.53□□□□□ -2
HOXD3P31249 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC2.53□□□□□ -2
HOXD3P31249 AC099654.7-201ENST00000635788 2127 ntBASIC2.53□□□□□ -2
HOXD3P31249 Y_RNA.40-201ENST00000362645 93 ntBASIC2.53□□□□□ -2
HOXD3P31249 Y_RNA.380-201ENST00000365663 111 ntBASIC2.53□□□□□ -2
HOXD3P31249 RFX3-203ENST00000381984 364 ntTSL 3 BASIC2.53□□□□□ -2
HOXD3P31249 Y_RNA.500-201ENST00000384466 111 ntBASIC2.53□□□□□ -2
HOXD3P31249 MIR549A-201ENST00000385268 96 ntBASIC2.53□□□□□ -2
HOXD3P31249 RPL21P1-201ENST00000399532 476 ntBASIC2.53□□□□□ -2
HOXD3P31249 RNU6-130P-201ENST00000411112 103 ntBASIC2.53□□□□□ -2
HOXD3P31249 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC2.53□□□□□ -2
HOXD3P31249 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC2.53□□□□□ -2
HOXD3P31249 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC2.53□□□□□ -2
HOXD3P31249 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC2.53□□□□□ -2
HOXD3P31249 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC2.53□□□□□ -2
HOXD3P31249 AC107626.1-201ENST00000471084 183 ntBASIC2.53□□□□□ -2
HOXD3P31249 UBE2DNL-203ENST00000474922 222 ntBASIC2.53□□□□□ -2
HOXD3P31249 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC2.53□□□□□ -2
HOXD3P31249 RPS27P26-201ENST00000494583 239 ntBASIC2.53□□□□□ -2
HOXD3P31249 AC093852.1-201ENST00000503587 266 ntBASIC2.53□□□□□ -2
HOXD3P31249 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC2.53□□□□□ -2
HOXD3P31249 SNORA31.26-201ENST00000517250 137 ntBASIC2.53□□□□□ -2
HOXD3P31249 AC109329.1-201ENST00000518744 317 ntBASIC2.53□□□□□ -2
HOXD3P31249 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC2.53□□□□□ -2
HOXD3P31249 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC2.53□□□□□ -2
HOXD3P31249 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC2.53□□□□□ -2
HOXD3P31249 MIR5571-201ENST00000577998 113 ntBASIC2.53□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms