Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
SDC1P18827 AL161423.1-201ENST00000613700 262 ntBASIC1.84□□□□□ -2.11
SDC1P18827 FAM157A-202ENST00000615155 405 ntBASIC1.84□□□□□ -2.11
SDC1P18827 AL590808.1-201ENST00000618696 141 ntBASIC1.84□□□□□ -2.11
SDC1P18827 MIR1321-201ENST00000637766 79 ntBASIC1.84□□□□□ -2.11
SDC1P18827 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.84□□□□□ -2.12
SDC1P18827 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.84□□□□□ -2.12
SDC1P18827 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC1.83□□□□□ -2.12
SDC1P18827 RNU4-15P-201ENST00000362613 141 ntBASIC1.83□□□□□ -2.12
SDC1P18827 RNY3P3-201ENST00000363816 102 ntBASIC1.83□□□□□ -2.12
SDC1P18827 RNU6-546P-201ENST00000383991 107 ntBASIC1.83□□□□□ -2.12
SDC1P18827 Y_RNA.500-201ENST00000384466 111 ntBASIC1.83□□□□□ -2.12
SDC1P18827 Y_RNA.516-201ENST00000384541 124 ntBASIC1.83□□□□□ -2.12
SDC1P18827 MIR181A1-201ENST00000385026 110 ntBASIC1.83□□□□□ -2.12
SDC1P18827 Y_RNA.597-201ENST00000410463 100 ntBASIC1.83□□□□□ -2.12
SDC1P18827 RN7SKP61-201ENST00000410642 295 ntBASIC1.83□□□□□ -2.12
SDC1P18827 ARL5AP1-201ENST00000418991 388 ntBASIC1.83□□□□□ -2.12
SDC1P18827 EIF1AXP1-201ENST00000419267 435 ntBASIC1.83□□□□□ -2.12
SDC1P18827 MTCO1P20-201ENST00000425366 358 ntBASIC1.83□□□□□ -2.12
SDC1P18827 MRPS10P2-201ENST00000431226 381 ntBASIC1.83□□□□□ -2.12
SDC1P18827 AL139415.2-201ENST00000431968 163 ntBASIC1.83□□□□□ -2.12
SDC1P18827 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC1.83□□□□□ -2.12
SDC1P18827 AC244670.1-201ENST00000436879 112 ntBASIC1.83□□□□□ -2.12
SDC1P18827 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC1.83□□□□□ -2.12
SDC1P18827 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC1.83□□□□□ -2.12
SDC1P18827 AC083904.1-201ENST00000487828 231 ntBASIC1.83□□□□□ -2.12
SDC1P18827 LIAS-206ENST00000513731 826 ntTSL 5 BASIC1.83□□□□□ -2.12
SDC1P18827 Y_RNA.665-201ENST00000516177 98 ntBASIC1.83□□□□□ -2.12
SDC1P18827 RNU6-965P-201ENST00000516721 96 ntBASIC1.83□□□□□ -2.12
SDC1P18827 SNORA31.25-201ENST00000517242 134 ntBASIC1.83□□□□□ -2.12
SDC1P18827 AC107953.1-201ENST00000522216 297 ntBASIC1.83□□□□□ -2.12
SDC1P18827 HSPE1P4-201ENST00000550617 308 ntBASIC1.83□□□□□ -2.12
SDC1P18827 AC004492.1-201ENST00000607036 742 ntBASIC1.83□□□□□ -2.12
SDC1P18827 DISC2.1-201ENST00000612827 205 ntBASIC1.83□□□□□ -2.12
SDC1P18827 AL132822.1-201ENST00000617063 513 ntBASIC1.83□□□□□ -2.12
SDC1P18827 uc_338.20-201ENST00000621563 178 ntBASIC1.83□□□□□ -2.12
SDC1P18827 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.83□□□□□ -2.12
SDC1P18827 AC064859.1-201ENST00000624741 174 ntBASIC1.83□□□□□ -2.12
SDC1P18827 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC1.83□□□□□ -2.12
SDC1P18827 KPNA2P1-201ENST00000458289 1591 ntBASIC1.83□□□□□ -2.12
SDC1P18827 AC121333.1-201ENST00000567488 2709 ntBASIC1.83□□□□□ -2.12
SDC1P18827 AP000560.1-201ENST00000624150 1937 ntBASIC1.83□□□□□ -2.12
SDC1P18827 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC1.82□□□□□ -2.12
SDC1P18827 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC1.82□□□□□ -2.12
SDC1P18827 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.82□□□□□ -2.12
SDC1P18827 Y_RNA.256-201ENST00000364594 104 ntBASIC1.82□□□□□ -2.12
SDC1P18827 SNORA16B-201ENST00000364674 135 ntBASIC1.82□□□□□ -2.12
SDC1P18827 EIF4E2P1-201ENST00000393781 255 ntBASIC1.82□□□□□ -2.12
SDC1P18827 AL445529.1-201ENST00000398713 389 ntBASIC1.82□□□□□ -2.12
SDC1P18827 RNU6ATAC38P-201ENST00000408119 126 ntBASIC1.82□□□□□ -2.12
SDC1P18827 RNU2-20P-201ENST00000410425 191 ntBASIC1.82□□□□□ -2.12
SDC1P18827 AL590135.1-201ENST00000422215 156 ntBASIC1.82□□□□□ -2.12
SDC1P18827 DPH3P2-201ENST00000422618 250 ntBASIC1.82□□□□□ -2.12
SDC1P18827 AC019205.3-201ENST00000424573 156 ntBASIC1.82□□□□□ -2.12
SDC1P18827 IFNA20P-201ENST00000436840 528 ntBASIC1.82□□□□□ -2.12
SDC1P18827 AC016700.2-201ENST00000446011 156 ntBASIC1.82□□□□□ -2.12
SDC1P18827 AL353705.4-201ENST00000449661 238 ntBASIC1.82□□□□□ -2.12
SDC1P18827 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC1.82□□□□□ -2.12
SDC1P18827 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC1.82□□□□□ -2.12
SDC1P18827 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC1.82□□□□□ -2.12
SDC1P18827 AC015911.1-201ENST00000495111 156 ntBASIC1.82□□□□□ -2.12
SDC1P18827 AC022447.4-201ENST00000504053 364 ntBASIC1.82□□□□□ -2.12
SDC1P18827 AC091435.1-201ENST00000505442 584 ntBASIC1.82□□□□□ -2.12
SDC1P18827 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC1.82□□□□□ -2.12
SDC1P18827 RNA5SP137-201ENST00000516833 135 ntBASIC1.82□□□□□ -2.12
SDC1P18827 AC022616.8-201ENST00000533569 253 ntBASIC1.82□□□□□ -2.12
SDC1P18827 MIR4435-1-201ENST00000582552 80 ntBASIC1.82□□□□□ -2.12
SDC1P18827 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.82□□□□□ -2.12
SDC1P18827 AL031274.2-201ENST00000599419 203 ntBASIC1.82□□□□□ -2.12
SDC1P18827 AC104458.1-201ENST00000608243 463 ntBASIC1.82□□□□□ -2.12
SDC1P18827 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC1.82□□□□□ -2.12
SDC1P18827 AL450472.1-202ENST00000637286 180 ntBASIC1.82□□□□□ -2.12
SDC1P18827 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
SDC1P18827 CENPCP1-201ENST00000533085 2578 ntBASIC1.82□□□□□ -2.12
SDC1P18827 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
SDC1P18827 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
SDC1P18827 RNU6-1329P-201ENST00000365664 107 ntBASIC1.81□□□□□ -2.12
SDC1P18827 SNORA26.3-201ENST00000391119 136 ntBASIC1.81□□□□□ -2.12
SDC1P18827 SNORA12-201ENST00000391162 147 ntBASIC1.81□□□□□ -2.12
SDC1P18827 Y_RNA.615-201ENST00000410769 117 ntBASIC1.81□□□□□ -2.12
SDC1P18827 RNA5SP489-201ENST00000410986 109 ntBASIC1.81□□□□□ -2.12
SDC1P18827 RNA5SP508-201ENST00000411327 119 ntBASIC1.81□□□□□ -2.12
SDC1P18827 AP000275.1-201ENST00000411943 390 ntBASIC1.81□□□□□ -2.12
SDC1P18827 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC1.81□□□□□ -2.12
SDC1P18827 AL133396.1-201ENST00000432048 687 ntBASIC1.81□□□□□ -2.12
SDC1P18827 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC1.81□□□□□ -2.12
SDC1P18827 AL359672.1-201ENST00000442302 409 ntBASIC1.81□□□□□ -2.12
SDC1P18827 RPL32P28-201ENST00000443577 397 ntBASIC1.81□□□□□ -2.12
SDC1P18827 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC1.81□□□□□ -2.12
SDC1P18827 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC1.81□□□□□ -2.12
SDC1P18827 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC1.81□□□□□ -2.12
SDC1P18827 AC145146.1-201ENST00000496370 254 ntBASIC1.81□□□□□ -2.12
SDC1P18827 AC008628.2-201ENST00000502605 298 ntBASIC1.81□□□□□ -2.12
SDC1P18827 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC1.81□□□□□ -2.12
SDC1P18827 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC1.81□□□□□ -2.12
SDC1P18827 AC109635.3-201ENST00000529536 185 ntBASIC1.81□□□□□ -2.12
SDC1P18827 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC1.81□□□□□ -2.12
SDC1P18827 TRAV32-201ENST00000553993 340 ntBASIC1.81□□□□□ -2.12
SDC1P18827 MIR3136-201ENST00000583498 78 ntBASIC1.81□□□□□ -2.12
SDC1P18827 AL078605.1-201ENST00000603529 500 ntBASIC1.81□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 113.4 ms