Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 HMGB1P29-201ENST00000505659 499 ntBASIC-0.07□□□□□ -2.42
COL6A3P12111 AC023632.1-201ENST00000518463 375 ntBASIC-0.07□□□□□ -2.42
COL6A3P12111 AL512310.8-201ENST00000550183 120 ntBASIC-0.07□□□□□ -2.42
COL6A3P12111 AP000860.1-201ENST00000605250 559 ntBASIC-0.07□□□□□ -2.42
COL6A3P12111 AL109620.1-201ENST00000618738 1197 ntBASIC-0.07□□□□□ -2.42
COL6A3P12111 7SK.10-201ENST00000621414 298 ntBASIC-0.07□□□□□ -2.42
COL6A3P12111 RNU6-929P-201ENST00000384429 107 ntBASIC-0.07□□□□□ -2.42
COL6A3P12111 MIR888-201ENST00000401186 77 ntBASIC-0.07□□□□□ -2.42
COL6A3P12111 RNU2-33P-201ENST00000410344 192 ntBASIC-0.07□□□□□ -2.42
COL6A3P12111 USP9YP19-201ENST00000412165 485 ntBASIC-0.07□□□□□ -2.42
COL6A3P12111 USP9YP13-201ENST00000417797 480 ntBASIC-0.07□□□□□ -2.42
COL6A3P12111 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC-0.07□□□□□ -2.42
COL6A3P12111 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC-0.07□□□□□ -2.42
COL6A3P12111 AC016903.2-201ENST00000456384 326 ntTSL 3 BASIC-0.07□□□□□ -2.42
COL6A3P12111 AL162395.1-201ENST00000457882 422 ntBASIC-0.07□□□□□ -2.42
COL6A3P12111 MTND1P3-201ENST00000484956 952 ntBASIC-0.07□□□□□ -2.42
COL6A3P12111 RPL17P19-201ENST00000489069 552 ntBASIC-0.07□□□□□ -2.42
COL6A3P12111 AC109329.1-201ENST00000518744 317 ntBASIC-0.07□□□□□ -2.42
COL6A3P12111 SUMO2P16-201ENST00000519475 264 ntBASIC-0.07□□□□□ -2.42
COL6A3P12111 C1DP5-201ENST00000525775 383 ntBASIC-0.07□□□□□ -2.42
COL6A3P12111 DEFB108D-201ENST00000527787 222 ntBASIC-0.07□□□□□ -2.42
COL6A3P12111 ZNF705CP-201ENST00000530515 889 ntBASIC-0.07□□□□□ -2.42
COL6A3P12111 AL121579.1-201ENST00000555129 305 ntBASIC-0.07□□□□□ -2.42
COL6A3P12111 AC005951.2-201ENST00000576282 495 ntBASIC-0.07□□□□□ -2.42
COL6A3P12111 AC012213.3-201ENST00000577199 777 ntBASIC-0.07□□□□□ -2.42
COL6A3P12111 AC004805.2-201ENST00000605382 482 ntBASIC-0.07□□□□□ -2.42
COL6A3P12111 AL357080.1-201ENST00000617394 239 ntBASIC-0.07□□□□□ -2.42
COL6A3P12111 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC-0.08□□□□□ -2.42
COL6A3P12111 MIRLET7D-201ENST00000362263 87 ntBASIC-0.08□□□□□ -2.42
COL6A3P12111 RNU6-741P-201ENST00000383889 107 ntBASIC-0.08□□□□□ -2.42
COL6A3P12111 MIR520F-201ENST00000384824 87 ntBASIC-0.08□□□□□ -2.42
COL6A3P12111 RNA5SP496-201ENST00000391240 109 ntBASIC-0.08□□□□□ -2.42
COL6A3P12111 UBE2V1P15-201ENST00000407776 448 ntBASIC-0.08□□□□□ -2.42
COL6A3P12111 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC-0.08□□□□□ -2.42
COL6A3P12111 AC099677.2-201ENST00000436385 175 ntBASIC-0.08□□□□□ -2.42
COL6A3P12111 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC-0.08□□□□□ -2.42
COL6A3P12111 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC-0.08□□□□□ -2.42
COL6A3P12111 RPL30P1-201ENST00000488676 339 ntBASIC-0.08□□□□□ -2.42
COL6A3P12111 RNU6-581P-201ENST00000516214 105 ntBASIC-0.08□□□□□ -2.42
COL6A3P12111 ACA59.2-201ENST00000517061 156 ntBASIC-0.08□□□□□ -2.42
COL6A3P12111 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC-0.08□□□□□ -2.42
COL6A3P12111 AC105129.3-201ENST00000605455 485 ntBASIC-0.08□□□□□ -2.42
COL6A3P12111 AL360219.1-201ENST00000610230 366 ntBASIC-0.08□□□□□ -2.42
COL6A3P12111 AC009237.15-201ENST00000610252 501 ntBASIC-0.08□□□□□ -2.42
COL6A3P12111 AL596245.1-201ENST00000618994 362 ntBASIC-0.08□□□□□ -2.42
COL6A3P12111 AC009269.6-201ENST00000621778 588 ntBASIC-0.08□□□□□ -2.42
COL6A3P12111 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC-0.08□□□□□ -2.42
COL6A3P12111 SNORD114-5-201ENST00000362928 70 ntBASIC-0.08□□□□□ -2.42
COL6A3P12111 Y_RNA.232-201ENST00000364369 96 ntBASIC-0.08□□□□□ -2.42
COL6A3P12111 MIR194-1-201ENST00000384892 85 ntBASIC-0.08□□□□□ -2.42
COL6A3P12111 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC-0.08□□□□□ -2.42
COL6A3P12111 AC104332.1-201ENST00000440471 797 ntBASIC-0.08□□□□□ -2.42
COL6A3P12111 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC-0.08□□□□□ -2.42
COL6A3P12111 AL441985.1-201ENST00000457727 251 ntBASIC-0.08□□□□□ -2.42
COL6A3P12111 AC113420.1-201ENST00000507903 571 ntBASIC-0.08□□□□□ -2.42
COL6A3P12111 KRTAP13-6P-201ENST00000508999 371 ntBASIC-0.08□□□□□ -2.42
COL6A3P12111 RNA5SP272-201ENST00000516095 111 ntBASIC-0.08□□□□□ -2.42
COL6A3P12111 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC-0.08□□□□□ -2.42
COL6A3P12111 AC090888.2-201ENST00000559765 1144 ntBASIC-0.08□□□□□ -2.42
COL6A3P12111 AC093249.1-201ENST00000567049 203 ntBASIC-0.08□□□□□ -2.42
COL6A3P12111 AC060771.1-201ENST00000582031 164 ntBASIC-0.08□□□□□ -2.42
COL6A3P12111 AL583856.2-201ENST00000606298 543 ntBASIC-0.08□□□□□ -2.42
COL6A3P12111 AC017037.3-201ENST00000625016 472 ntBASIC-0.08□□□□□ -2.42
COL6A3P12111 U2.21-201ENST00000637295 81 ntBASIC-0.08□□□□□ -2.42
COL6A3P12111 BX322639.1-202ENST00000423987 2213 ntBASIC-0.08□□□□□ -2.42
COL6A3P12111 RNA5SP259-201ENST00000365541 109 ntBASIC-0.08□□□□□ -2.42
COL6A3P12111 RNU6-793P-201ENST00000384233 104 ntBASIC-0.08□□□□□ -2.42
COL6A3P12111 RNU6-24P-201ENST00000384440 107 ntBASIC-0.08□□□□□ -2.42
COL6A3P12111 Y_RNA.511-201ENST00000384514 103 ntBASIC-0.08□□□□□ -2.42
COL6A3P12111 AL591034.2-201ENST00000402839 359 ntBASIC-0.08□□□□□ -2.42
COL6A3P12111 AC127391.1-201ENST00000411737 98 ntBASIC-0.08□□□□□ -2.42
COL6A3P12111 AC012368.2-201ENST00000423539 560 ntTSL 3 BASIC-0.08□□□□□ -2.42
COL6A3P12111 RPP40P1-201ENST00000426762 456 ntBASIC-0.08□□□□□ -2.42
COL6A3P12111 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC-0.08□□□□□ -2.42
COL6A3P12111 HMGN1P12-201ENST00000499125 195 ntBASIC-0.08□□□□□ -2.42
COL6A3P12111 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC-0.08□□□□□ -2.42
COL6A3P12111 AC079140.3-201ENST00000511111 550 ntBASIC-0.08□□□□□ -2.42
COL6A3P12111 RNU6-1183P-201ENST00000517054 60 ntBASIC-0.08□□□□□ -2.42
COL6A3P12111 RNA5SP290-201ENST00000517133 127 ntBASIC-0.08□□□□□ -2.42
COL6A3P12111 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC-0.08□□□□□ -2.42
COL6A3P12111 AC015688.6-201ENST00000577737 104 ntBASIC-0.08□□□□□ -2.42
COL6A3P12111 AF129408.1-201ENST00000608767 431 ntBASIC-0.08□□□□□ -2.42
COL6A3P12111 AL133445.2-201ENST00000611191 527 ntBASIC-0.08□□□□□ -2.42
COL6A3P12111 UBE2Q2P6-201ENST00000612666 153 ntBASIC-0.08□□□□□ -2.42
COL6A3P12111 AC092634.7-201ENST00000621022 103 ntBASIC-0.08□□□□□ -2.42
COL6A3P12111 MIR8063-201ENST00000621930 81 ntBASIC-0.08□□□□□ -2.42
COL6A3P12111 AP003400.6-201ENST00000624698 740 ntBASIC-0.08□□□□□ -2.42
COL6A3P12111 RNU4-79P-201ENST00000362764 141 ntBASIC-0.09□□□□□ -2.42
COL6A3P12111 RNU6-226P-201ENST00000363778 107 ntBASIC-0.09□□□□□ -2.42
COL6A3P12111 RNU6-546P-201ENST00000383991 107 ntBASIC-0.09□□□□□ -2.42
COL6A3P12111 RNU6-540P-201ENST00000384622 101 ntBASIC-0.09□□□□□ -2.42
COL6A3P12111 SPINK13-201ENST00000398450 509 ntAPPRIS P2 TSL 1 (best) BASIC-0.09□□□□□ -2.42
COL6A3P12111 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC-0.09□□□□□ -2.42
COL6A3P12111 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC-0.09□□□□□ -2.42
COL6A3P12111 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC-0.09□□□□□ -2.42
COL6A3P12111 PLD1-217ENST00000627725 174 ntTSL 5 BASIC-0.09□□□□□ -2.42
COL6A3P12111 MTND5P18-201ENST00000445624 1801 ntBASIC-0.09□□□□□ -2.42
COL6A3P12111 Y_RNA.364-201ENST00000365532 101 ntBASIC-0.09□□□□□ -2.42
COL6A3P12111 MIR649-201ENST00000384843 97 ntBASIC-0.09□□□□□ -2.42
COL6A3P12111 RNU2-47P-201ENST00000410649 186 ntBASIC-0.09□□□□□ -2.42
Retrieved 100 of 98,524 protein–RNA pairs in 108 ms