Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AC009163.5-201ENST00000575421 637 ntBASIC3.18□□□□□ -1.9
COL3A1P02461 AC012669.1-201ENST00000603209 283 ntBASIC3.18□□□□□ -1.9
COL3A1P02461 MIR15A-201ENST00000607334 83 ntBASIC3.18□□□□□ -1.9
COL3A1P02461 AC046143.2-201ENST00000609789 160 ntBASIC3.18□□□□□ -1.9
COL3A1P02461 AC006023.2-201ENST00000609916 167 ntBASIC3.18□□□□□ -1.9
COL3A1P02461 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
COL3A1P02461 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
COL3A1P02461 AL359893.1-201ENST00000447628 1580 ntBASIC3.18□□□□□ -1.9
COL3A1P02461 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
COL3A1P02461 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
COL3A1P02461 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC3.17□□□□□ -1.9
COL3A1P02461 Y_RNA.65-201ENST00000362846 100 ntBASIC3.17□□□□□ -1.9
COL3A1P02461 MIR628-201ENST00000385229 95 ntBASIC3.17□□□□□ -1.9
COL3A1P02461 SNORD73A-201ENST00000386062 65 ntBASIC3.17□□□□□ -1.9
COL3A1P02461 RNU6-700P-201ENST00000391043 107 ntBASIC3.17□□□□□ -1.9
COL3A1P02461 RNU6-817P-201ENST00000391083 104 ntBASIC3.17□□□□□ -1.9
COL3A1P02461 MIR1250-201ENST00000408098 113 ntBASIC3.17□□□□□ -1.9
COL3A1P02461 RN7SKP192-201ENST00000411291 327 ntBASIC3.17□□□□□ -1.9
COL3A1P02461 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC3.17□□□□□ -1.9
COL3A1P02461 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC3.17□□□□□ -1.9
COL3A1P02461 AC004866.2-201ENST00000438285 481 ntBASIC3.17□□□□□ -1.9
COL3A1P02461 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC3.17□□□□□ -1.9
COL3A1P02461 AC010683.1-201ENST00000473673 378 ntBASIC3.17□□□□□ -1.9
COL3A1P02461 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC3.17□□□□□ -1.9
COL3A1P02461 NDUFB4P9-201ENST00000511646 388 ntBASIC3.17□□□□□ -1.9
COL3A1P02461 RN7SKP258-201ENST00000517151 304 ntBASIC3.17□□□□□ -1.9
COL3A1P02461 AC091144.1-201ENST00000519573 138 ntBASIC3.17□□□□□ -1.9
COL3A1P02461 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC3.17□□□□□ -1.9
COL3A1P02461 AC004584.2-201ENST00000570407 410 ntBASIC3.17□□□□□ -1.9
COL3A1P02461 AC130289.1-201ENST00000577321 73 ntBASIC3.17□□□□□ -1.9
COL3A1P02461 AL158827.2-201ENST00000602494 330 ntBASIC3.17□□□□□ -1.9
COL3A1P02461 AL713866.2-201ENST00000603579 219 ntBASIC3.17□□□□□ -1.9
COL3A1P02461 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC3.17□□□□□ -1.9
COL3A1P02461 MIR1244-1-201ENST00000612829 85 ntBASIC3.17□□□□□ -1.9
COL3A1P02461 AL691447.3-201ENST00000635020 330 ntBASIC3.17□□□□□ -1.9
COL3A1P02461 MIR1244-3-201ENST00000635744 85 ntBASIC3.17□□□□□ -1.9
COL3A1P02461 MIR4496-201ENST00000635896 61 ntBASIC3.17□□□□□ -1.9
COL3A1P02461 MIR1244-2-201ENST00000636449 85 ntBASIC3.17□□□□□ -1.9
COL3A1P02461 MIR1244-4-202ENST00000636813 85 ntBASIC3.17□□□□□ -1.9
COL3A1P02461 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
COL3A1P02461 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC3.17□□□□□ -1.9
COL3A1P02461 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
COL3A1P02461 RNU6-774P-201ENST00000363238 107 ntBASIC3.16□□□□□ -1.9
COL3A1P02461 RNU6-1303P-201ENST00000364841 107 ntBASIC3.16□□□□□ -1.9
COL3A1P02461 Y_RNA.297-201ENST00000364950 91 ntBASIC3.16□□□□□ -1.9
COL3A1P02461 Y_RNA.539-201ENST00000384635 107 ntBASIC3.16□□□□□ -1.9
COL3A1P02461 RNU6ATAC3P-201ENST00000387974 126 ntBASIC3.16□□□□□ -1.9
COL3A1P02461 AL591034.2-201ENST00000402839 359 ntBASIC3.16□□□□□ -1.9
COL3A1P02461 RN7SKP223-201ENST00000410582 62 ntBASIC3.16□□□□□ -1.9
COL3A1P02461 RNU6-1203P-201ENST00000410703 110 ntBASIC3.16□□□□□ -1.9
COL3A1P02461 AC092447.6-201ENST00000414578 210 ntBASIC3.16□□□□□ -1.9
COL3A1P02461 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC3.16□□□□□ -1.9
COL3A1P02461 AC099336.2-201ENST00000422457 254 ntBASIC3.16□□□□□ -1.9
COL3A1P02461 UBE2D3P2-201ENST00000424409 445 ntBASIC3.16□□□□□ -1.9
COL3A1P02461 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC3.16□□□□□ -1.9
COL3A1P02461 AL139109.1-201ENST00000455491 297 ntBASIC3.16□□□□□ -1.9
COL3A1P02461 RNU6-1037P-201ENST00000459571 107 ntBASIC3.16□□□□□ -1.9
COL3A1P02461 RPS15AP34-201ENST00000487776 387 ntBASIC3.16□□□□□ -1.9
COL3A1P02461 MTND3P25-201ENST00000509243 135 ntBASIC3.16□□□□□ -1.9
COL3A1P02461 AC026436.1-201ENST00000510537 270 ntBASIC3.16□□□□□ -1.9
COL3A1P02461 RNU4-71P-201ENST00000516258 113 ntBASIC3.16□□□□□ -1.9
COL3A1P02461 Y_RNA.676-201ENST00000516393 96 ntBASIC3.16□□□□□ -1.9
COL3A1P02461 RN7SKP82-201ENST00000516786 223 ntBASIC3.16□□□□□ -1.9
COL3A1P02461 AC034114.1-201ENST00000520293 285 ntBASIC3.16□□□□□ -1.9
COL3A1P02461 ATP5F1P5-201ENST00000526403 760 ntBASIC3.16□□□□□ -1.9
COL3A1P02461 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC3.16□□□□□ -1.9
COL3A1P02461 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.16□□□□□ -1.9
COL3A1P02461 AMZ2P1-203ENST00000565833 850 ntBASIC3.16□□□□□ -1.9
COL3A1P02461 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC3.16□□□□□ -1.9
COL3A1P02461 MIR4506-201ENST00000584693 77 ntBASIC3.16□□□□□ -1.9
COL3A1P02461 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC3.16□□□□□ -1.9
COL3A1P02461 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
COL3A1P02461 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC3.16□□□□□ -1.9
COL3A1P02461 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC3.16□□□□□ -1.9
COL3A1P02461 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
COL3A1P02461 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC3.16□□□□□ -1.9
COL3A1P02461 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
COL3A1P02461 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
COL3A1P02461 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
COL3A1P02461 RNU1-76P-201ENST00000362903 159 ntBASIC3.16□□□□□ -1.9
COL3A1P02461 Y_RNA.84-201ENST00000363011 104 ntBASIC3.16□□□□□ -1.9
COL3A1P02461 Y_RNA.352-201ENST00000365439 102 ntBASIC3.16□□□□□ -1.9
COL3A1P02461 RNU6-48P-201ENST00000384161 107 ntBASIC3.16□□□□□ -1.9
COL3A1P02461 Y_RNA.464-201ENST00000384282 110 ntBASIC3.16□□□□□ -1.9
COL3A1P02461 RNU6-886P-201ENST00000384319 105 ntBASIC3.16□□□□□ -1.9
COL3A1P02461 MRPL35P1-201ENST00000404272 572 ntBASIC3.16□□□□□ -1.9
COL3A1P02461 AL513475.1-201ENST00000406602 315 ntBASIC3.16□□□□□ -1.9
COL3A1P02461 RNU2-14P-201ENST00000411053 191 ntBASIC3.16□□□□□ -1.9
COL3A1P02461 RNU6-325P-201ENST00000411132 105 ntBASIC3.16□□□□□ -1.9
COL3A1P02461 AP000275.1-201ENST00000411943 390 ntBASIC3.16□□□□□ -1.9
COL3A1P02461 RPL21P38-201ENST00000418090 167 ntBASIC3.16□□□□□ -1.9
COL3A1P02461 AL606753.1-201ENST00000427435 87 ntBASIC3.16□□□□□ -1.9
COL3A1P02461 AC092423.1-201ENST00000430165 186 ntBASIC3.16□□□□□ -1.9
COL3A1P02461 RNA5SP385-201ENST00000515947 110 ntBASIC3.16□□□□□ -1.9
COL3A1P02461 AC022868.1-201ENST00000517767 391 ntBASIC3.16□□□□□ -1.9
COL3A1P02461 AC109329.1-201ENST00000518744 317 ntBASIC3.16□□□□□ -1.9
COL3A1P02461 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC3.16□□□□□ -1.9
COL3A1P02461 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC3.16□□□□□ -1.9
COL3A1P02461 AC073410.2-201ENST00000603240 332 ntBASIC3.16□□□□□ -1.9
COL3A1P02461 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 103.8 ms