Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC0.26□□□□□ -2.37
ABCA1O95477 SNORA63D-201ENST00000364359 132 ntBASIC0.26□□□□□ -2.37
ABCA1O95477 RNY4P3-201ENST00000365254 95 ntBASIC0.26□□□□□ -2.37
ABCA1O95477 SNORA75B-201ENST00000384053 137 ntBASIC0.26□□□□□ -2.37
ABCA1O95477 Y_RNA.476-201ENST00000384347 108 ntBASIC0.26□□□□□ -2.37
ABCA1O95477 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC0.26□□□□□ -2.37
ABCA1O95477 SNORD99-201ENST00000408612 74 ntBASIC0.26□□□□□ -2.37
ABCA1O95477 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC0.26□□□□□ -2.37
ABCA1O95477 AC010468.3-201ENST00000508225 458 ntBASIC0.26□□□□□ -2.37
ABCA1O95477 AL356057.1-201ENST00000533798 831 ntBASIC0.26□□□□□ -2.37
ABCA1O95477 ANKRD36BP1-202ENST00000604892 1417 ntBASIC0.26□□□□□ -2.37
ABCA1O95477 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC0.25□□□□□ -2.37
ABCA1O95477 MIR412-201ENST00000362142 91 ntBASIC0.25□□□□□ -2.37
ABCA1O95477 U6.112-201ENST00000384129 70 ntBASIC0.25□□□□□ -2.37
ABCA1O95477 MIR605-201ENST00000385078 83 ntBASIC0.25□□□□□ -2.37
ABCA1O95477 PAXBP1P1-201ENST00000449315 447 ntBASIC0.25□□□□□ -2.37
ABCA1O95477 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC0.25□□□□□ -2.37
ABCA1O95477 AL162395.1-201ENST00000457882 422 ntBASIC0.25□□□□□ -2.37
ABCA1O95477 AC108729.2-201ENST00000476543 840 ntBASIC0.25□□□□□ -2.37
ABCA1O95477 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC0.25□□□□□ -2.37
ABCA1O95477 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC0.25□□□□□ -2.37
ABCA1O95477 AC021451.1-201ENST00000523498 1129 ntBASIC0.25□□□□□ -2.37
ABCA1O95477 DEFB108A-201ENST00000530110 222 ntBASIC0.25□□□□□ -2.37
ABCA1O95477 AL590705.4-201ENST00000532209 134 ntBASIC0.25□□□□□ -2.37
ABCA1O95477 BNIP3P26-201ENST00000600827 554 ntBASIC0.25□□□□□ -2.37
ABCA1O95477 AL353778.1-201ENST00000603149 408 ntBASIC0.25□□□□□ -2.37
ABCA1O95477 AL138889.2-201ENST00000603883 242 ntBASIC0.25□□□□□ -2.37
ABCA1O95477 AL445435.1-201ENST00000604232 665 ntBASIC0.25□□□□□ -2.37
ABCA1O95477 RNU6-87P-201ENST00000607561 108 ntBASIC0.25□□□□□ -2.37
ABCA1O95477 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.25□□□□□ -2.37
ABCA1O95477 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.25□□□□□ -2.37
ABCA1O95477 Y_RNA.99-201ENST00000363138 105 ntBASIC0.25□□□□□ -2.37
ABCA1O95477 SNORD114-15-201ENST00000364687 72 ntBASIC0.25□□□□□ -2.37
ABCA1O95477 SNORA50A-201ENST00000384225 134 ntBASIC0.25□□□□□ -2.37
ABCA1O95477 RNU6-72P-201ENST00000384285 79 ntBASIC0.25□□□□□ -2.37
ABCA1O95477 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC0.25□□□□□ -2.37
ABCA1O95477 AL953862.1-201ENST00000423016 168 ntBASIC0.25□□□□□ -2.37
ABCA1O95477 LARP1BP3-201ENST00000437229 869 ntBASIC0.25□□□□□ -2.37
ABCA1O95477 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC0.25□□□□□ -2.37
ABCA1O95477 AC010587.2-201ENST00000511727 448 ntBASIC0.25□□□□□ -2.37
ABCA1O95477 AC011406.1-201ENST00000512440 370 ntBASIC0.25□□□□□ -2.37
ABCA1O95477 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC0.25□□□□□ -2.37
ABCA1O95477 AC023538.1-201ENST00000534576 736 ntBASIC0.25□□□□□ -2.37
ABCA1O95477 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC0.25□□□□□ -2.37
ABCA1O95477 AC122134.1-202ENST00000569111 1201 ntBASIC0.25□□□□□ -2.37
ABCA1O95477 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC0.25□□□□□ -2.37
ABCA1O95477 AC174048.1-201ENST00000603389 144 ntBASIC0.25□□□□□ -2.37
ABCA1O95477 RNU6-88P-201ENST00000606801 100 ntBASIC0.25□□□□□ -2.37
ABCA1O95477 CDKN2B-AS_3.1-201ENST00000617587 144 ntBASIC0.25□□□□□ -2.37
ABCA1O95477 MIR8063-201ENST00000621930 81 ntBASIC0.25□□□□□ -2.37
ABCA1O95477 RNU6-289P-201ENST00000364093 107 ntBASIC0.24□□□□□ -2.37
ABCA1O95477 RNU6-923P-201ENST00000364753 107 ntBASIC0.24□□□□□ -2.37
ABCA1O95477 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC0.24□□□□□ -2.37
ABCA1O95477 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC0.24□□□□□ -2.37
ABCA1O95477 ZNF736P7Y-201ENST00000425158 820 ntBASIC0.24□□□□□ -2.37
ABCA1O95477 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC0.24□□□□□ -2.37
ABCA1O95477 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC0.24□□□□□ -2.37
ABCA1O95477 SEPT14P24-201ENST00000447236 180 ntBASIC0.24□□□□□ -2.37
ABCA1O95477 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC0.24□□□□□ -2.37
ABCA1O95477 MTND1P3-201ENST00000484956 952 ntBASIC0.24□□□□□ -2.37
ABCA1O95477 AC091435.1-201ENST00000505442 584 ntBASIC0.24□□□□□ -2.37
ABCA1O95477 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC0.24□□□□□ -2.37
ABCA1O95477 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC0.24□□□□□ -2.37
ABCA1O95477 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC0.24□□□□□ -2.37
ABCA1O95477 UBE2Q2P8-201ENST00000560644 102 ntBASIC0.24□□□□□ -2.37
ABCA1O95477 EIF1P4-201ENST00000572664 335 ntBASIC0.24□□□□□ -2.37
ABCA1O95477 MIR4723-201ENST00000585070 81 ntBASIC0.24□□□□□ -2.37
ABCA1O95477 AC107304.1-201ENST00000604229 296 ntBASIC0.24□□□□□ -2.37
ABCA1O95477 AC105148.1-201ENST00000604961 409 ntBASIC0.24□□□□□ -2.37
ABCA1O95477 AC040896.1-201ENST00000613819 479 ntBASIC0.24□□□□□ -2.37
ABCA1O95477 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC0.24□□□□□ -2.37
ABCA1O95477 AC023934.1-201ENST00000574529 2389 ntBASIC0.24□□□□□ -2.37
ABCA1O95477 RNU5B-1-201ENST00000363286 116 ntBASIC0.24□□□□□ -2.37
ABCA1O95477 U3.8-201ENST00000363675 217 ntBASIC0.24□□□□□ -2.37
ABCA1O95477 Y_RNA.185-201ENST00000363894 100 ntBASIC0.24□□□□□ -2.37
ABCA1O95477 RNU4-56P-201ENST00000364700 142 ntBASIC0.24□□□□□ -2.37
ABCA1O95477 Y_RNA.534-201ENST00000384599 112 ntBASIC0.24□□□□□ -2.37
ABCA1O95477 MIR320C1-201ENST00000408566 88 ntBASIC0.24□□□□□ -2.37
ABCA1O95477 AC006461.1-201ENST00000412637 326 ntBASIC0.24□□□□□ -2.37
ABCA1O95477 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC0.24□□□□□ -2.37
ABCA1O95477 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.24□□□□□ -2.37
ABCA1O95477 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC0.24□□□□□ -2.37
ABCA1O95477 MTCYBP1-201ENST00000454315 1119 ntBASIC0.24□□□□□ -2.37
ABCA1O95477 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC0.24□□□□□ -2.37
ABCA1O95477 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC0.24□□□□□ -2.37
ABCA1O95477 AC008088.1-201ENST00000580993 280 ntBASIC0.24□□□□□ -2.37
ABCA1O95477 BX284668.6-201ENST00000606899 438 ntBASIC0.24□□□□□ -2.37
ABCA1O95477 AP001596.2-201ENST00000608410 312 ntBASIC0.24□□□□□ -2.37
ABCA1O95477 GHRLOS.1-201ENST00000610995 70 ntBASIC0.24□□□□□ -2.37
ABCA1O95477 AC093913.1-201ENST00000614178 329 ntBASIC0.24□□□□□ -2.37
ABCA1O95477 DLG2-AS1_1.1-201ENST00000622319 213 ntBASIC0.24□□□□□ -2.37
ABCA1O95477 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.23□□□□□ -2.37
ABCA1O95477 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC0.23□□□□□ -2.37
ABCA1O95477 RNA5SP361-201ENST00000362686 118 ntBASIC0.23□□□□□ -2.37
ABCA1O95477 SNORD114-24-201ENST00000365029 72 ntBASIC0.23□□□□□ -2.37
ABCA1O95477 RNU6-142P-201ENST00000384019 107 ntBASIC0.23□□□□□ -2.37
ABCA1O95477 RNA5SP25-201ENST00000410815 110 ntBASIC0.23□□□□□ -2.37
ABCA1O95477 Y_RNA.623-201ENST00000411128 95 ntBASIC0.23□□□□□ -2.37
ABCA1O95477 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC0.23□□□□□ -2.37
ABCA1O95477 AL158053.1-201ENST00000441503 453 ntBASIC0.23□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms