Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AC060766.3-201ENST00000591442 263 ntBASIC2.64□□□□□ -1.99
HOXC11O43248 AC116312.1-201ENST00000606841 314 ntBASIC2.64□□□□□ -1.99
HOXC11O43248 MIR8076-201ENST00000611401 83 ntBASIC2.64□□□□□ -1.99
HOXC11O43248 AC063943.3-201ENST00000615562 356 ntBASIC2.64□□□□□ -1.99
HOXC11O43248 U4.3-201ENST00000621047 82 ntBASIC2.64□□□□□ -1.99
HOXC11O43248 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.64□□□□□ -1.99
HOXC11O43248 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.64□□□□□ -1.99
HOXC11O43248 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
HOXC11O43248 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.64□□□□□ -1.99
HOXC11O43248 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC2.64□□□□□ -1.99
HOXC11O43248 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.63□□□□□ -1.99
HOXC11O43248 CASC19-280ENST00000642102 1351 ntBASIC2.63□□□□□ -1.99
HOXC11O43248 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
HOXC11O43248 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC2.63□□□□□ -1.99
HOXC11O43248 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC2.63□□□□□ -1.99
HOXC11O43248 Y_RNA.135-201ENST00000363439 95 ntBASIC2.63□□□□□ -1.99
HOXC11O43248 RNU6-546P-201ENST00000383991 107 ntBASIC2.63□□□□□ -1.99
HOXC11O43248 RNU6-95P-201ENST00000384697 107 ntBASIC2.63□□□□□ -1.99
HOXC11O43248 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC2.63□□□□□ -1.99
HOXC11O43248 AL591034.2-201ENST00000402839 359 ntBASIC2.63□□□□□ -1.99
HOXC11O43248 Y_RNA.597-201ENST00000410463 100 ntBASIC2.63□□□□□ -1.99
HOXC11O43248 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.63□□□□□ -1.99
HOXC11O43248 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC2.63□□□□□ -1.99
HOXC11O43248 AL139396.1-201ENST00000421137 167 ntBASIC2.63□□□□□ -1.99
HOXC11O43248 AL590632.1-201ENST00000424289 371 ntBASIC2.63□□□□□ -1.99
HOXC11O43248 IFNA20P-201ENST00000436840 528 ntBASIC2.63□□□□□ -1.99
HOXC11O43248 AL353572.1-201ENST00000442490 417 ntBASIC2.63□□□□□ -1.99
HOXC11O43248 RPS29P27-201ENST00000463711 170 ntBASIC2.63□□□□□ -1.99
HOXC11O43248 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC2.63□□□□□ -1.99
HOXC11O43248 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.63□□□□□ -1.99
HOXC11O43248 SNORA31.15-201ENST00000516771 132 ntBASIC2.63□□□□□ -1.99
HOXC11O43248 SNORA31.16-201ENST00000516773 139 ntBASIC2.63□□□□□ -1.99
HOXC11O43248 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC2.63□□□□□ -1.99
HOXC11O43248 CPDP1-201ENST00000579660 283 ntBASIC2.63□□□□□ -1.99
HOXC11O43248 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC2.63□□□□□ -1.99
HOXC11O43248 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
HOXC11O43248 AL022345.1-201ENST00000607292 135 ntBASIC2.63□□□□□ -1.99
HOXC11O43248 AL590808.1-201ENST00000618696 141 ntBASIC2.63□□□□□ -1.99
HOXC11O43248 ZNF271P-202ENST00000465539 1970 ntBASIC2.63□□□□□ -1.99
HOXC11O43248 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.63□□□□□ -1.99
HOXC11O43248 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.63□□□□□ -1.99
HOXC11O43248 AP006437.1-201ENST00000641440 3685 ntBASIC2.62□□□□□ -1.99
HOXC11O43248 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC2.62□□□□□ -1.99
HOXC11O43248 Y_RNA.123-201ENST00000363338 102 ntBASIC2.62□□□□□ -1.99
HOXC11O43248 RNU1-23P-201ENST00000363361 144 ntBASIC2.62□□□□□ -1.99
HOXC11O43248 Y_RNA.151-201ENST00000363566 112 ntBASIC2.62□□□□□ -1.99
HOXC11O43248 SNORA25B-201ENST00000365507 128 ntBASIC2.62□□□□□ -1.99
HOXC11O43248 MIR518C-201ENST00000384822 101 ntBASIC2.62□□□□□ -1.99
HOXC11O43248 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.62□□□□□ -1.99
HOXC11O43248 RNU6-1148P-201ENST00000410992 104 ntBASIC2.62□□□□□ -1.99
HOXC11O43248 RNU2-32P-201ENST00000411193 191 ntBASIC2.62□□□□□ -1.99
HOXC11O43248 AC009963.1-201ENST00000417265 157 ntBASIC2.62□□□□□ -1.99
HOXC11O43248 RPL30P16-201ENST00000419341 429 ntBASIC2.62□□□□□ -1.99
HOXC11O43248 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC2.62□□□□□ -1.99
HOXC11O43248 SRIP1-201ENST00000489235 288 ntBASIC2.62□□□□□ -1.99
HOXC11O43248 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC2.62□□□□□ -1.99
HOXC11O43248 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC2.62□□□□□ -1.99
HOXC11O43248 RN7SKP24-201ENST00000515888 284 ntBASIC2.62□□□□□ -1.99
HOXC11O43248 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC2.62□□□□□ -1.99
HOXC11O43248 AC087241.2-201ENST00000535801 324 ntBASIC2.62□□□□□ -1.99
HOXC11O43248 AP002770.2-201ENST00000543613 532 ntBASIC2.62□□□□□ -1.99
HOXC11O43248 MIR3126-201ENST00000577443 74 ntBASIC2.62□□□□□ -1.99
HOXC11O43248 AC019193.3-201ENST00000609144 554 ntBASIC2.62□□□□□ -1.99
HOXC11O43248 AL133215.3-201ENST00000609801 448 ntBASIC2.62□□□□□ -1.99
HOXC11O43248 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.62□□□□□ -1.99
HOXC11O43248 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC2.61□□□□□ -1.99
HOXC11O43248 SNORA26.3-201ENST00000391119 136 ntBASIC2.61□□□□□ -1.99
HOXC11O43248 RNU6-876P-201ENST00000391295 104 ntBASIC2.61□□□□□ -1.99
HOXC11O43248 RN7SKP284-201ENST00000411002 343 ntBASIC2.61□□□□□ -1.99
HOXC11O43248 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC2.61□□□□□ -1.99
HOXC11O43248 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.61□□□□□ -1.99
HOXC11O43248 CBX3P6-201ENST00000430257 527 ntBASIC2.61□□□□□ -1.99
HOXC11O43248 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC2.61□□□□□ -1.99
HOXC11O43248 MTND1P11-201ENST00000456661 876 ntBASIC2.61□□□□□ -1.99
HOXC11O43248 PPP1R2P5-201ENST00000457256 603 ntBASIC2.61□□□□□ -1.99
HOXC11O43248 AC145146.1-201ENST00000496370 254 ntBASIC2.61□□□□□ -1.99
HOXC11O43248 RNU6-566P-201ENST00000516790 107 ntBASIC2.61□□□□□ -1.99
HOXC11O43248 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC2.61□□□□□ -1.99
HOXC11O43248 AC118273.2-201ENST00000532092 465 ntBASIC2.61□□□□□ -1.99
HOXC11O43248 AC016256.1-201ENST00000547971 354 ntBASIC2.61□□□□□ -1.99
HOXC11O43248 POLR3GP2-201ENST00000588366 668 ntBASIC2.61□□□□□ -1.99
HOXC11O43248 AC078795.3-201ENST00000602913 472 ntBASIC2.61□□□□□ -1.99
HOXC11O43248 MIR3976-201ENST00000606807 139 ntBASIC2.61□□□□□ -1.99
HOXC11O43248 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC2.61□□□□□ -1.99
HOXC11O43248 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
HOXC11O43248 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC2.6□□□□□ -1.99
HOXC11O43248 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
HOXC11O43248 CBX3P1-201ENST00000325243 554 ntBASIC2.6□□□□□ -1.99
HOXC11O43248 RNU4-15P-201ENST00000362613 141 ntBASIC2.6□□□□□ -1.99
HOXC11O43248 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC2.6□□□□□ -1.99
HOXC11O43248 OOSP1P1-201ENST00000423265 274 ntBASIC2.6□□□□□ -1.99
HOXC11O43248 Z82205.1-201ENST00000428456 297 ntBASIC2.6□□□□□ -1.99
HOXC11O43248 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.6□□□□□ -1.99
HOXC11O43248 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.6□□□□□ -1.99
HOXC11O43248 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC2.6□□□□□ -1.99
HOXC11O43248 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC2.6□□□□□ -1.99
HOXC11O43248 ACA59.1-201ENST00000515966 143 ntBASIC2.6□□□□□ -1.99
HOXC11O43248 RNA5SP454-201ENST00000517231 127 ntBASIC2.6□□□□□ -1.99
HOXC11O43248 IGHVII-53-1-201ENST00000519538 255 ntBASIC2.6□□□□□ -1.99
HOXC11O43248 CYCSP26-201ENST00000534107 320 ntBASIC2.6□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 95.6 ms