Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.21□□□□□ -1.9
PCDHA1Q9Y5I3 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.21□□□□□ -1.9
PCDHA1Q9Y5I3 AC009541.1-201ENST00000438279 2662 ntBASIC3.2□□□□□ -1.9
PCDHA1Q9Y5I3 Y_RNA.48-201ENST00000362710 103 ntBASIC3.2□□□□□ -1.9
PCDHA1Q9Y5I3 RNY1P16-201ENST00000363063 111 ntBASIC3.2□□□□□ -1.9
PCDHA1Q9Y5I3 RNU1-112P-201ENST00000364401 164 ntBASIC3.2□□□□□ -1.9
PCDHA1Q9Y5I3 RNU6-1141P-201ENST00000364520 107 ntBASIC3.2□□□□□ -1.9
PCDHA1Q9Y5I3 MIR544A-201ENST00000384855 91 ntBASIC3.2□□□□□ -1.9
PCDHA1Q9Y5I3 MIR767-201ENST00000390228 109 ntBASIC3.2□□□□□ -1.9
PCDHA1Q9Y5I3 RNA5SP354-201ENST00000391247 136 ntBASIC3.2□□□□□ -1.9
PCDHA1Q9Y5I3 SNORA11.2-201ENST00000408318 127 ntBASIC3.2□□□□□ -1.9
PCDHA1Q9Y5I3 EIF1AXP1-201ENST00000419267 435 ntBASIC3.2□□□□□ -1.9
PCDHA1Q9Y5I3 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC3.2□□□□□ -1.9
PCDHA1Q9Y5I3 AC006483.1-201ENST00000487308 313 ntBASIC3.2□□□□□ -1.9
PCDHA1Q9Y5I3 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC3.2□□□□□ -1.9
PCDHA1Q9Y5I3 RNU6-120P-201ENST00000516077 103 ntBASIC3.2□□□□□ -1.9
PCDHA1Q9Y5I3 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC3.2□□□□□ -1.9
PCDHA1Q9Y5I3 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC3.2□□□□□ -1.9
PCDHA1Q9Y5I3 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
PCDHA1Q9Y5I3 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
PCDHA1Q9Y5I3 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
PCDHA1Q9Y5I3 MAPK10-362ENST00000641864 4484 ntBASIC3.19□□□□□ -1.9
PCDHA1Q9Y5I3 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC3.19□□□□□ -1.9
PCDHA1Q9Y5I3 SNORA22B-201ENST00000383876 138 ntBASIC3.19□□□□□ -1.9
PCDHA1Q9Y5I3 Y_RNA.422-201ENST00000384054 114 ntBASIC3.19□□□□□ -1.9
PCDHA1Q9Y5I3 Y_RNA.577-201ENST00000384794 101 ntBASIC3.19□□□□□ -1.9
PCDHA1Q9Y5I3 RNU1-101P-201ENST00000391171 127 ntBASIC3.19□□□□□ -1.9
PCDHA1Q9Y5I3 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC3.19□□□□□ -1.9
PCDHA1Q9Y5I3 AC099799.1-201ENST00000439809 192 ntBASIC3.19□□□□□ -1.9
PCDHA1Q9Y5I3 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC3.19□□□□□ -1.9
PCDHA1Q9Y5I3 OSTCP8-201ENST00000445117 448 ntBASIC3.19□□□□□ -1.9
PCDHA1Q9Y5I3 AL513124.1-201ENST00000450410 614 ntBASIC3.19□□□□□ -1.9
PCDHA1Q9Y5I3 RPS26P21-201ENST00000475397 348 ntBASIC3.19□□□□□ -1.9
PCDHA1Q9Y5I3 AP004217.1-201ENST00000480579 346 ntBASIC3.19□□□□□ -1.9
PCDHA1Q9Y5I3 GZMAP1-201ENST00000503054 631 ntBASIC3.19□□□□□ -1.9
PCDHA1Q9Y5I3 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC3.19□□□□□ -1.9
PCDHA1Q9Y5I3 RNU6ATAC13P-201ENST00000516152 131 ntBASIC3.19□□□□□ -1.9
PCDHA1Q9Y5I3 RNU6-988P-201ENST00000519081 107 ntBASIC3.19□□□□□ -1.9
PCDHA1Q9Y5I3 AC023442.1-201ENST00000531247 422 ntBASIC3.19□□□□□ -1.9
PCDHA1Q9Y5I3 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC3.19□□□□□ -1.9
PCDHA1Q9Y5I3 AC016256.1-201ENST00000547971 354 ntBASIC3.19□□□□□ -1.9
PCDHA1Q9Y5I3 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.19□□□□□ -1.9
PCDHA1Q9Y5I3 MIR4319-201ENST00000577285 85 ntBASIC3.19□□□□□ -1.9
PCDHA1Q9Y5I3 MIR4513-201ENST00000581077 86 ntBASIC3.19□□□□□ -1.9
PCDHA1Q9Y5I3 ZNF861P-201ENST00000588126 639 ntBASIC3.19□□□□□ -1.9
PCDHA1Q9Y5I3 AC060766.3-201ENST00000591442 263 ntBASIC3.19□□□□□ -1.9
PCDHA1Q9Y5I3 RPL12P50-201ENST00000603116 116 ntBASIC3.19□□□□□ -1.9
PCDHA1Q9Y5I3 uc_338.14-201ENST00000613162 166 ntBASIC3.19□□□□□ -1.9
PCDHA1Q9Y5I3 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
PCDHA1Q9Y5I3 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
PCDHA1Q9Y5I3 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
PCDHA1Q9Y5I3 Y_RNA.216-201ENST00000364205 93 ntBASIC3.18□□□□□ -1.9
PCDHA1Q9Y5I3 RNA5SP139-201ENST00000364340 117 ntBASIC3.18□□□□□ -1.9
PCDHA1Q9Y5I3 RNU1-115P-201ENST00000365329 160 ntBASIC3.18□□□□□ -1.9
PCDHA1Q9Y5I3 SNORA33.2-201ENST00000365413 134 ntBASIC3.18□□□□□ -1.9
PCDHA1Q9Y5I3 Y_RNA.428-201ENST00000384078 102 ntBASIC3.18□□□□□ -1.9
PCDHA1Q9Y5I3 MIR181A2-201ENST00000384863 110 ntBASIC3.18□□□□□ -1.9
PCDHA1Q9Y5I3 MIR147B-201ENST00000390185 80 ntBASIC3.18□□□□□ -1.9
PCDHA1Q9Y5I3 RN7SKP61-201ENST00000410642 295 ntBASIC3.18□□□□□ -1.9
PCDHA1Q9Y5I3 AC008267.5-201ENST00000424928 265 ntBASIC3.18□□□□□ -1.9
PCDHA1Q9Y5I3 AC009414.1-201ENST00000427200 443 ntBASIC3.18□□□□□ -1.9
PCDHA1Q9Y5I3 AC078809.1-201ENST00000427601 140 ntBASIC3.18□□□□□ -1.9
PCDHA1Q9Y5I3 AL118496.2-201ENST00000448300 230 ntBASIC3.18□□□□□ -1.9
PCDHA1Q9Y5I3 AC091179.1-201ENST00000461606 579 ntBASIC3.18□□□□□ -1.9
PCDHA1Q9Y5I3 RPL30P10-201ENST00000488148 337 ntBASIC3.18□□□□□ -1.9
PCDHA1Q9Y5I3 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC3.18□□□□□ -1.9
PCDHA1Q9Y5I3 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC3.18□□□□□ -1.9
PCDHA1Q9Y5I3 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC3.18□□□□□ -1.9
PCDHA1Q9Y5I3 SNORD116.3-201ENST00000517176 78 ntBASIC3.18□□□□□ -1.9
PCDHA1Q9Y5I3 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC3.18□□□□□ -1.9
PCDHA1Q9Y5I3 AC096772.1-201ENST00000609146 564 ntBASIC3.18□□□□□ -1.9
PCDHA1Q9Y5I3 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC3.18□□□□□ -1.9
PCDHA1Q9Y5I3 AC110079.1-202ENST00000635213 138 ntBASIC3.18□□□□□ -1.9
PCDHA1Q9Y5I3 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.18□□□□□ -1.9
PCDHA1Q9Y5I3 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC3.18□□□□□ -1.9
PCDHA1Q9Y5I3 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
PCDHA1Q9Y5I3 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC3.18□□□□□ -1.9
PCDHA1Q9Y5I3 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC3.17□□□□□ -1.9
PCDHA1Q9Y5I3 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
PCDHA1Q9Y5I3 RNU6-1285P-201ENST00000363480 105 ntBASIC3.17□□□□□ -1.9
PCDHA1Q9Y5I3 Y_RNA.496-201ENST00000384444 101 ntBASIC3.17□□□□□ -1.9
PCDHA1Q9Y5I3 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
PCDHA1Q9Y5I3 RNA5SP184-201ENST00000411071 108 ntBASIC3.17□□□□□ -1.9
PCDHA1Q9Y5I3 AL451074.5-201ENST00000415894 435 ntBASIC3.17□□□□□ -1.9
PCDHA1Q9Y5I3 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC3.17□□□□□ -1.9
PCDHA1Q9Y5I3 RPL39P29-201ENST00000447779 157 ntBASIC3.17□□□□□ -1.9
PCDHA1Q9Y5I3 RN7SKP210-201ENST00000459176 261 ntBASIC3.17□□□□□ -1.9
PCDHA1Q9Y5I3 AC003982.1-202ENST00000469928 248 ntBASIC3.17□□□□□ -1.9
PCDHA1Q9Y5I3 AC104564.1-201ENST00000493028 407 ntBASIC3.17□□□□□ -1.9
PCDHA1Q9Y5I3 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC3.17□□□□□ -1.9
PCDHA1Q9Y5I3 RPL23AP94-201ENST00000512518 302 ntBASIC3.17□□□□□ -1.9
PCDHA1Q9Y5I3 RN7SKP295-201ENST00000517264 153 ntBASIC3.17□□□□□ -1.9
PCDHA1Q9Y5I3 AC109329.1-201ENST00000518744 317 ntBASIC3.17□□□□□ -1.9
PCDHA1Q9Y5I3 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC3.17□□□□□ -1.9
PCDHA1Q9Y5I3 MIR4672-201ENST00000583126 81 ntBASIC3.17□□□□□ -1.9
PCDHA1Q9Y5I3 RPS15AP11-201ENST00000594193 385 ntBASIC3.17□□□□□ -1.9
PCDHA1Q9Y5I3 AL355877.2-201ENST00000603670 358 ntBASIC3.17□□□□□ -1.9
PCDHA1Q9Y5I3 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.17□□□□□ -1.9
PCDHA1Q9Y5I3 AC007792.1-201ENST00000623023 402 ntBASIC3.17□□□□□ -1.9
PCDHA1Q9Y5I3 AC002543.1-201ENST00000299783 1954 ntBASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 152.4 ms