Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
CCDC9Q9Y3X0 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC4.22□□□□□ -1.73
CCDC9Q9Y3X0 RNU6-797P-201ENST00000363101 109 ntBASIC4.22□□□□□ -1.73
CCDC9Q9Y3X0 RNA5SP240-201ENST00000365355 128 ntBASIC4.22□□□□□ -1.73
CCDC9Q9Y3X0 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC4.22□□□□□ -1.73
CCDC9Q9Y3X0 Y_RNA.533-201ENST00000384596 114 ntBASIC4.22□□□□□ -1.73
CCDC9Q9Y3X0 RNA5SP494-201ENST00000410653 129 ntBASIC4.22□□□□□ -1.73
CCDC9Q9Y3X0 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
CCDC9Q9Y3X0 AL139132.1-201ENST00000431587 344 ntBASIC4.22□□□□□ -1.73
CCDC9Q9Y3X0 AC105272.1-201ENST00000438604 198 ntBASIC4.22□□□□□ -1.73
CCDC9Q9Y3X0 AL135938.1-201ENST00000443141 297 ntBASIC4.22□□□□□ -1.73
CCDC9Q9Y3X0 AC104389.3-201ENST00000445629 235 ntBASIC4.22□□□□□ -1.73
CCDC9Q9Y3X0 RPL30P15-201ENST00000457129 321 ntBASIC4.22□□□□□ -1.73
CCDC9Q9Y3X0 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC4.22□□□□□ -1.73
CCDC9Q9Y3X0 RPS27P29-201ENST00000463110 252 ntBASIC4.22□□□□□ -1.73
CCDC9Q9Y3X0 AC090515.1-201ENST00000465295 476 ntBASIC4.22□□□□□ -1.73
CCDC9Q9Y3X0 AC021146.2-201ENST00000504736 556 ntBASIC4.22□□□□□ -1.73
CCDC9Q9Y3X0 RNU6-237P-201ENST00000515985 71 ntBASIC4.22□□□□□ -1.73
CCDC9Q9Y3X0 RNU6-586P-201ENST00000517265 104 ntBASIC4.22□□□□□ -1.73
CCDC9Q9Y3X0 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC4.22□□□□□ -1.73
CCDC9Q9Y3X0 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC4.22□□□□□ -1.73
CCDC9Q9Y3X0 uc_338.1-201ENST00000612113 180 ntBASIC4.22□□□□□ -1.73
CCDC9Q9Y3X0 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC4.22□□□□□ -1.73
CCDC9Q9Y3X0 AL450472.1-202ENST00000637286 180 ntBASIC4.22□□□□□ -1.73
CCDC9Q9Y3X0 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
CCDC9Q9Y3X0 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
CCDC9Q9Y3X0 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
CCDC9Q9Y3X0 AL021368.2-201ENST00000606125 5352 ntBASIC4.22□□□□□ -1.73
CCDC9Q9Y3X0 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC4.21□□□□□ -1.73
CCDC9Q9Y3X0 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
CCDC9Q9Y3X0 Y_RNA.58-201ENST00000362807 102 ntBASIC4.21□□□□□ -1.74
CCDC9Q9Y3X0 Y_RNA.154-201ENST00000363624 102 ntBASIC4.21□□□□□ -1.74
CCDC9Q9Y3X0 RNY3P1-201ENST00000365085 102 ntBASIC4.21□□□□□ -1.74
CCDC9Q9Y3X0 RNY3-201ENST00000365484 102 ntBASIC4.21□□□□□ -1.74
CCDC9Q9Y3X0 Y_RNA.404-201ENST00000383978 102 ntBASIC4.21□□□□□ -1.74
CCDC9Q9Y3X0 Y_RNA.490-201ENST00000384413 102 ntBASIC4.21□□□□□ -1.74
CCDC9Q9Y3X0 RNY4P36-201ENST00000391116 96 ntBASIC4.21□□□□□ -1.74
CCDC9Q9Y3X0 MTND3P23-201ENST00000431980 347 ntBASIC4.21□□□□□ -1.74
CCDC9Q9Y3X0 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC4.21□□□□□ -1.74
CCDC9Q9Y3X0 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC4.21□□□□□ -1.74
CCDC9Q9Y3X0 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC4.21□□□□□ -1.74
CCDC9Q9Y3X0 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC4.21□□□□□ -1.74
CCDC9Q9Y3X0 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC4.21□□□□□ -1.74
CCDC9Q9Y3X0 TGIF1P1-201ENST00000558095 802 ntBASIC4.21□□□□□ -1.74
CCDC9Q9Y3X0 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC4.21□□□□□ -1.74
CCDC9Q9Y3X0 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC4.21□□□□□ -1.74
CCDC9Q9Y3X0 C8orf59P2-201ENST00000603441 271 ntBASIC4.21□□□□□ -1.74
CCDC9Q9Y3X0 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
CCDC9Q9Y3X0 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC4.21□□□□□ -1.74
CCDC9Q9Y3X0 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
CCDC9Q9Y3X0 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
CCDC9Q9Y3X0 AC069528.2-201ENST00000624849 1991 ntBASIC4.2□□□□□ -1.74
CCDC9Q9Y3X0 RNU6-1032P-201ENST00000384100 107 ntBASIC4.2□□□□□ -1.74
CCDC9Q9Y3X0 HMGB3P2-201ENST00000411913 584 ntBASIC4.2□□□□□ -1.74
CCDC9Q9Y3X0 AC012306.1-201ENST00000423267 114 ntBASIC4.2□□□□□ -1.74
CCDC9Q9Y3X0 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC4.2□□□□□ -1.74
CCDC9Q9Y3X0 RPL23AP67-201ENST00000465341 474 ntBASIC4.2□□□□□ -1.74
CCDC9Q9Y3X0 APOA2-205ENST00000468465 421 ntTSL 2 BASIC4.2□□□□□ -1.74
CCDC9Q9Y3X0 CYP4A27P-201ENST00000567218 190 ntBASIC4.2□□□□□ -1.74
CCDC9Q9Y3X0 MIR5696-201ENST00000578474 85 ntBASIC4.2□□□□□ -1.74
CCDC9Q9Y3X0 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC4.2□□□□□ -1.74
CCDC9Q9Y3X0 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
CCDC9Q9Y3X0 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC4.2□□□□□ -1.74
CCDC9Q9Y3X0 AL078605.1-201ENST00000603529 500 ntBASIC4.2□□□□□ -1.74
CCDC9Q9Y3X0 AL138963.2-201ENST00000605137 226 ntBASIC4.2□□□□□ -1.74
CCDC9Q9Y3X0 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC4.2□□□□□ -1.74
CCDC9Q9Y3X0 AC126177.8-201ENST00000618339 1015 ntBASIC4.2□□□□□ -1.74
CCDC9Q9Y3X0 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC4.2□□□□□ -1.74
CCDC9Q9Y3X0 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC4.2□□□□□ -1.74
CCDC9Q9Y3X0 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC4.2□□□□□ -1.74
CCDC9Q9Y3X0 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
CCDC9Q9Y3X0 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
CCDC9Q9Y3X0 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
CCDC9Q9Y3X0 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC4.19□□□□□ -1.74
CCDC9Q9Y3X0 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
CCDC9Q9Y3X0 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC4.19□□□□□ -1.74
CCDC9Q9Y3X0 SNORD15B-201ENST00000384714 146 ntBASIC4.19□□□□□ -1.74
CCDC9Q9Y3X0 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC4.19□□□□□ -1.74
CCDC9Q9Y3X0 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC4.19□□□□□ -1.74
CCDC9Q9Y3X0 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC4.19□□□□□ -1.74
CCDC9Q9Y3X0 AL161788.1-201ENST00000441805 169 ntBASIC4.19□□□□□ -1.74
CCDC9Q9Y3X0 AC010095.1-201ENST00000443543 144 ntBASIC4.19□□□□□ -1.74
CCDC9Q9Y3X0 SNORD19B-201ENST00000459623 84 ntBASIC4.19□□□□□ -1.74
CCDC9Q9Y3X0 Y_RNA.718-201ENST00000517110 102 ntBASIC4.19□□□□□ -1.74
CCDC9Q9Y3X0 AC109329.2-201ENST00000519658 482 ntBASIC4.19□□□□□ -1.74
CCDC9Q9Y3X0 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC4.19□□□□□ -1.74
CCDC9Q9Y3X0 CBX3P8-201ENST00000532412 525 ntBASIC4.19□□□□□ -1.74
CCDC9Q9Y3X0 AL356055.1-201ENST00000602528 446 ntBASIC4.19□□□□□ -1.74
CCDC9Q9Y3X0 B3GNTL1P2-201ENST00000603673 288 ntBASIC4.19□□□□□ -1.74
CCDC9Q9Y3X0 AC084781.2-201ENST00000615568 161 ntBASIC4.19□□□□□ -1.74
CCDC9Q9Y3X0 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC4.19□□□□□ -1.74
CCDC9Q9Y3X0 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC4.19□□□□□ -1.74
CCDC9Q9Y3X0 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
CCDC9Q9Y3X0 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC4.19□□□□□ -1.74
CCDC9Q9Y3X0 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC4.18□□□□□ -1.74
CCDC9Q9Y3X0 MTND4P29-201ENST00000503122 1372 ntBASIC4.18□□□□□ -1.74
CCDC9Q9Y3X0 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC4.18□□□□□ -1.74
CCDC9Q9Y3X0 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
CCDC9Q9Y3X0 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC4.18□□□□□ -1.74
CCDC9Q9Y3X0 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 138.1 ms