Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 RNU4-75P-201ENST00000364621 146 ntBASIC1.92□□□□□ -2.1
FOXA2Q9Y261 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC1.92□□□□□ -2.1
FOXA2Q9Y261 RNU6-26P-201ENST00000383985 107 ntBASIC1.92□□□□□ -2.1
FOXA2Q9Y261 Y_RNA.436-201ENST00000384097 102 ntBASIC1.92□□□□□ -2.1
FOXA2Q9Y261 RNU11-3P-201ENST00000391111 133 ntBASIC1.92□□□□□ -2.1
FOXA2Q9Y261 RNA5SP465-201ENST00000391195 109 ntBASIC1.92□□□□□ -2.1
FOXA2Q9Y261 MTCYBP2-201ENST00000407745 171 ntBASIC1.92□□□□□ -2.1
FOXA2Q9Y261 AC016907.1-201ENST00000419483 435 ntBASIC1.92□□□□□ -2.1
FOXA2Q9Y261 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC1.92□□□□□ -2.1
FOXA2Q9Y261 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC1.92□□□□□ -2.1
FOXA2Q9Y261 U8.21-201ENST00000459536 136 ntBASIC1.92□□□□□ -2.1
FOXA2Q9Y261 AC008628.2-201ENST00000502605 298 ntBASIC1.92□□□□□ -2.1
FOXA2Q9Y261 AC019235.1-201ENST00000503847 207 ntBASIC1.92□□□□□ -2.1
FOXA2Q9Y261 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC1.92□□□□□ -2.1
FOXA2Q9Y261 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC1.92□□□□□ -2.1
FOXA2Q9Y261 LIAS-206ENST00000513731 826 ntTSL 5 BASIC1.92□□□□□ -2.1
FOXA2Q9Y261 RNU6-612P-201ENST00000516909 102 ntBASIC1.92□□□□□ -2.1
FOXA2Q9Y261 RNA5SP490-201ENST00000517141 136 ntBASIC1.92□□□□□ -2.1
FOXA2Q9Y261 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC1.92□□□□□ -2.1
FOXA2Q9Y261 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC1.92□□□□□ -2.1
FOXA2Q9Y261 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC1.92□□□□□ -2.1
FOXA2Q9Y261 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC1.92□□□□□ -2.1
FOXA2Q9Y261 MIR5692C1-201ENST00000585309 91 ntBASIC1.92□□□□□ -2.1
FOXA2Q9Y261 AL162413.1-201ENST00000603198 110 ntBASIC1.92□□□□□ -2.1
FOXA2Q9Y261 AC025754.2-201ENST00000606491 432 ntBASIC1.92□□□□□ -2.1
FOXA2Q9Y261 AL022345.1-201ENST00000607292 135 ntBASIC1.92□□□□□ -2.1
FOXA2Q9Y261 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC1.92□□□□□ -2.1
FOXA2Q9Y261 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC1.92□□□□□ -2.1
FOXA2Q9Y261 AL162373.1-201ENST00000620433 407 ntBASIC1.92□□□□□ -2.1
FOXA2Q9Y261 MIR1291-201ENST00000627649 87 ntBASIC1.92□□□□□ -2.1
FOXA2Q9Y261 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
FOXA2Q9Y261 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC1.92□□□□□ -2.1
FOXA2Q9Y261 OR4G1P-203ENST00000641984 1631 ntBASIC1.91□□□□□ -2.1
FOXA2Q9Y261 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC1.91□□□□□ -2.1
FOXA2Q9Y261 MTND4P23-201ENST00000447723 1363 ntBASIC1.91□□□□□ -2.1
FOXA2Q9Y261 Y_RNA.231-201ENST00000364358 102 ntBASIC1.91□□□□□ -2.1
FOXA2Q9Y261 RNU6-234P-201ENST00000365229 104 ntBASIC1.91□□□□□ -2.1
FOXA2Q9Y261 RNU1-51P-201ENST00000365345 176 ntBASIC1.91□□□□□ -2.1
FOXA2Q9Y261 RNU6-214P-201ENST00000384130 107 ntBASIC1.91□□□□□ -2.1
FOXA2Q9Y261 MIR518C-201ENST00000384822 101 ntBASIC1.91□□□□□ -2.1
FOXA2Q9Y261 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC1.91□□□□□ -2.1
FOXA2Q9Y261 SNORA26.3-201ENST00000391119 136 ntBASIC1.91□□□□□ -2.1
FOXA2Q9Y261 EIF4E2P1-201ENST00000393781 255 ntBASIC1.91□□□□□ -2.1
FOXA2Q9Y261 RNU6-1068P-201ENST00000410958 103 ntBASIC1.91□□□□□ -2.1
FOXA2Q9Y261 AL356379.1-201ENST00000414105 126 ntBASIC1.91□□□□□ -2.1
FOXA2Q9Y261 MTCO3P41-201ENST00000414801 328 ntBASIC1.91□□□□□ -2.1
FOXA2Q9Y261 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC1.91□□□□□ -2.1
FOXA2Q9Y261 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC1.91□□□□□ -2.1
FOXA2Q9Y261 MRPS10P2-201ENST00000431226 381 ntBASIC1.91□□□□□ -2.1
FOXA2Q9Y261 HMGN2P3-201ENST00000433603 273 ntBASIC1.91□□□□□ -2.1
FOXA2Q9Y261 HMGN2P5-201ENST00000436882 273 ntBASIC1.91□□□□□ -2.1
FOXA2Q9Y261 AL353689.1-201ENST00000438895 199 ntBASIC1.91□□□□□ -2.1
FOXA2Q9Y261 AL359672.1-201ENST00000442302 409 ntBASIC1.91□□□□□ -2.1
FOXA2Q9Y261 KRTAP13-6P-201ENST00000508999 371 ntBASIC1.91□□□□□ -2.1
FOXA2Q9Y261 RNU6-314P-201ENST00000516574 104 ntBASIC1.91□□□□□ -2.1
FOXA2Q9Y261 Y_RNA.704-201ENST00000516851 102 ntBASIC1.91□□□□□ -2.1
FOXA2Q9Y261 IGHVIII-5-1-201ENST00000523059 99 ntBASIC1.91□□□□□ -2.1
FOXA2Q9Y261 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC1.91□□□□□ -2.1
FOXA2Q9Y261 HMGB1P33-201ENST00000563485 527 ntBASIC1.91□□□□□ -2.1
FOXA2Q9Y261 CYP4A27P-201ENST00000567218 190 ntBASIC1.91□□□□□ -2.1
FOXA2Q9Y261 MIR4672-201ENST00000583126 81 ntBASIC1.91□□□□□ -2.1
FOXA2Q9Y261 AC243960.4-201ENST00000600532 288 ntBASIC1.91□□□□□ -2.1
FOXA2Q9Y261 Z98751.3-201ENST00000604447 521 ntBASIC1.91□□□□□ -2.1
FOXA2Q9Y261 AC097065.2-201ENST00000608159 533 ntBASIC1.91□□□□□ -2.1
FOXA2Q9Y261 AC064836.2-201ENST00000609491 462 ntBASIC1.91□□□□□ -2.1
FOXA2Q9Y261 CTSLP2-204ENST00000629029 392 ntBASIC1.91□□□□□ -2.1
FOXA2Q9Y261 AC068137.3-201ENST00000639191 341 ntBASIC1.91□□□□□ -2.1
FOXA2Q9Y261 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
FOXA2Q9Y261 AC233981.2-201ENST00000611524 1614 ntBASIC1.91□□□□□ -2.1
FOXA2Q9Y261 RNU6-227P-201ENST00000362865 103 ntBASIC1.9□□□□□ -2.11
FOXA2Q9Y261 U3.12-201ENST00000364498 214 ntBASIC1.9□□□□□ -2.11
FOXA2Q9Y261 Y_RNA.372-201ENST00000365599 102 ntBASIC1.9□□□□□ -2.11
FOXA2Q9Y261 RNU6-1329P-201ENST00000365664 107 ntBASIC1.9□□□□□ -2.11
FOXA2Q9Y261 RNU6-483P-201ENST00000384088 108 ntBASIC1.9□□□□□ -2.11
FOXA2Q9Y261 SNORA36A-201ENST00000384221 132 ntBASIC1.9□□□□□ -2.11
FOXA2Q9Y261 MIR514A2-201ENST00000385131 88 ntBASIC1.9□□□□□ -2.11
FOXA2Q9Y261 MIR514A3-201ENST00000385132 88 ntBASIC1.9□□□□□ -2.11
FOXA2Q9Y261 RNU6-780P-201ENST00000391030 104 ntBASIC1.9□□□□□ -2.11
FOXA2Q9Y261 RNA5SP201-201ENST00000410316 124 ntBASIC1.9□□□□□ -2.11
FOXA2Q9Y261 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC1.9□□□□□ -2.11
FOXA2Q9Y261 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC1.9□□□□□ -2.11
FOXA2Q9Y261 DLGAP5P1-201ENST00000430307 464 ntBASIC1.9□□□□□ -2.11
FOXA2Q9Y261 ERLEC1P1-201ENST00000433806 578 ntBASIC1.9□□□□□ -2.11
FOXA2Q9Y261 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC1.9□□□□□ -2.11
FOXA2Q9Y261 RPL23AP6-201ENST00000446637 472 ntBASIC1.9□□□□□ -2.11
FOXA2Q9Y261 RNA5SP233-201ENST00000459153 113 ntBASIC1.9□□□□□ -2.11
FOXA2Q9Y261 RPL9P9-202ENST00000466501 579 ntBASIC1.9□□□□□ -2.11
FOXA2Q9Y261 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC1.9□□□□□ -2.11
FOXA2Q9Y261 RPL38P4-201ENST00000502376 214 ntBASIC1.9□□□□□ -2.11
FOXA2Q9Y261 AC234781.5-201ENST00000508429 271 ntBASIC1.9□□□□□ -2.11
FOXA2Q9Y261 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC1.9□□□□□ -2.11
FOXA2Q9Y261 RNU6-506P-201ENST00000516553 94 ntBASIC1.9□□□□□ -2.11
FOXA2Q9Y261 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC1.9□□□□□ -2.11
FOXA2Q9Y261 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC1.9□□□□□ -2.11
FOXA2Q9Y261 AL078605.1-201ENST00000603529 500 ntBASIC1.9□□□□□ -2.11
FOXA2Q9Y261 CYP2C61P-201ENST00000604072 290 ntBASIC1.9□□□□□ -2.11
FOXA2Q9Y261 DISC2.1-201ENST00000612827 205 ntBASIC1.9□□□□□ -2.11
FOXA2Q9Y261 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC1.9□□□□□ -2.11
FOXA2Q9Y261 MIR6852-201ENST00000621699 66 ntBASIC1.9□□□□□ -2.11
FOXA2Q9Y261 AC130454.1-201ENST00000622948 401 ntBASIC1.9□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 87.8 ms