Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 RNU2-72P-201ENST00000411175 163 ntBASIC0.61□□□□□ -2.31
SCN3AQ9NY46 MTCO1P21-201ENST00000416634 589 ntBASIC0.61□□□□□ -2.31
SCN3AQ9NY46 EBAG9P1-201ENST00000418955 543 ntBASIC0.61□□□□□ -2.31
SCN3AQ9NY46 AC013262.1-201ENST00000426710 252 ntBASIC0.61□□□□□ -2.31
SCN3AQ9NY46 AL596276.1-201ENST00000434465 418 ntBASIC0.61□□□□□ -2.31
SCN3AQ9NY46 ART2BP-201ENST00000453501 499 ntBASIC0.61□□□□□ -2.31
SCN3AQ9NY46 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC0.61□□□□□ -2.31
SCN3AQ9NY46 HMGN1P13-201ENST00000505795 138 ntBASIC0.61□□□□□ -2.31
SCN3AQ9NY46 RNU2-10P-201ENST00000516375 211 ntBASIC0.61□□□□□ -2.31
SCN3AQ9NY46 SCARNA16.2-201ENST00000516520 172 ntBASIC0.61□□□□□ -2.31
SCN3AQ9NY46 AP006587.4-201ENST00000526053 529 ntBASIC0.61□□□□□ -2.31
SCN3AQ9NY46 AC090517.1-201ENST00000569307 266 ntBASIC0.61□□□□□ -2.31
SCN3AQ9NY46 AC137800.2-201ENST00000574375 120 ntBASIC0.61□□□□□ -2.31
SCN3AQ9NY46 MIR3136-201ENST00000583498 78 ntBASIC0.61□□□□□ -2.31
SCN3AQ9NY46 AP000860.1-201ENST00000605250 559 ntBASIC0.61□□□□□ -2.31
SCN3AQ9NY46 AC018889.1-201ENST00000605372 397 ntBASIC0.61□□□□□ -2.31
SCN3AQ9NY46 AP002782.1-201ENST00000623107 614 ntBASIC0.61□□□□□ -2.31
SCN3AQ9NY46 RNU6-23P-201ENST00000363283 107 ntBASIC0.6□□□□□ -2.31
SCN3AQ9NY46 Y_RNA.302-201ENST00000364997 102 ntBASIC0.6□□□□□ -2.31
SCN3AQ9NY46 RNU6-142P-201ENST00000384019 107 ntBASIC0.6□□□□□ -2.31
SCN3AQ9NY46 MIR558-201ENST00000384920 94 ntBASIC0.6□□□□□ -2.31
SCN3AQ9NY46 MIR301A-201ENST00000385261 86 ntBASIC0.6□□□□□ -2.31
SCN3AQ9NY46 TRIM60P10Y-201ENST00000425589 751 ntBASIC0.6□□□□□ -2.31
SCN3AQ9NY46 snoU13.9-201ENST00000458927 103 ntBASIC0.6□□□□□ -2.31
SCN3AQ9NY46 AC099513.1-201ENST00000490423 301 ntBASIC0.6□□□□□ -2.31
SCN3AQ9NY46 AC021146.8-201ENST00000507455 733 ntBASIC0.6□□□□□ -2.31
SCN3AQ9NY46 RNVU1-2-201ENST00000516326 135 ntBASIC0.6□□□□□ -2.31
SCN3AQ9NY46 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC0.6□□□□□ -2.31
SCN3AQ9NY46 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC0.6□□□□□ -2.31
SCN3AQ9NY46 AC211469.2-201ENST00000605461 205 ntBASIC0.6□□□□□ -2.31
SCN3AQ9NY46 AC012676.2-201ENST00000619258 186 ntBASIC0.6□□□□□ -2.31
SCN3AQ9NY46 AC092813.1-201ENST00000635455 969 ntTSL 5 BASIC0.6□□□□□ -2.31
SCN3AQ9NY46 AC073343.1-201ENST00000328239 651 ntBASIC0.6□□□□□ -2.31
SCN3AQ9NY46 MIR330-201ENST00000362196 94 ntBASIC0.6□□□□□ -2.31
SCN3AQ9NY46 RNU6-78P-201ENST00000362897 107 ntBASIC0.6□□□□□ -2.31
SCN3AQ9NY46 RNU6-1285P-201ENST00000363480 105 ntBASIC0.6□□□□□ -2.31
SCN3AQ9NY46 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC0.6□□□□□ -2.31
SCN3AQ9NY46 MIR1197-201ENST00000408818 88 ntBASIC0.6□□□□□ -2.31
SCN3AQ9NY46 RPL22P18-201ENST00000417197 377 ntBASIC0.6□□□□□ -2.31
SCN3AQ9NY46 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC0.6□□□□□ -2.31
SCN3AQ9NY46 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC0.6□□□□□ -2.31
SCN3AQ9NY46 AL669831.1-202ENST00000428504 417 ntBASIC0.6□□□□□ -2.31
SCN3AQ9NY46 RNU1-131P-201ENST00000458943 161 ntBASIC0.6□□□□□ -2.31
SCN3AQ9NY46 AL163195.1-201ENST00000496941 348 ntBASIC0.6□□□□□ -2.31
SCN3AQ9NY46 AC108078.1-201ENST00000508073 725 ntBASIC0.6□□□□□ -2.31
SCN3AQ9NY46 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC0.6□□□□□ -2.31
SCN3AQ9NY46 AC074344.1-201ENST00000512823 224 ntBASIC0.6□□□□□ -2.31
SCN3AQ9NY46 RNU7-51P-201ENST00000516560 62 ntBASIC0.6□□□□□ -2.31
SCN3AQ9NY46 RNU5A-4P-201ENST00000516588 111 ntBASIC0.6□□□□□ -2.31
SCN3AQ9NY46 AC021231.3-201ENST00000558497 370 ntBASIC0.6□□□□□ -2.31
SCN3AQ9NY46 AC108747.1-201ENST00000609508 535 ntBASIC0.6□□□□□ -2.31
SCN3AQ9NY46 AL138960.2-201ENST00000625145 535 ntBASIC0.6□□□□□ -2.31
SCN3AQ9NY46 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC0.6□□□□□ -2.31
SCN3AQ9NY46 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.59□□□□□ -2.31
SCN3AQ9NY46 RNY4P24-201ENST00000362735 96 ntBASIC0.59□□□□□ -2.31
SCN3AQ9NY46 RNA5SP257-201ENST00000363023 116 ntBASIC0.59□□□□□ -2.31
SCN3AQ9NY46 RNA5SP499-201ENST00000363982 119 ntBASIC0.59□□□□□ -2.31
SCN3AQ9NY46 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.59□□□□□ -2.31
SCN3AQ9NY46 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC0.59□□□□□ -2.31
SCN3AQ9NY46 AL161935.2-201ENST00000414627 60 ntBASIC0.59□□□□□ -2.31
SCN3AQ9NY46 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC0.59□□□□□ -2.31
SCN3AQ9NY46 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC0.59□□□□□ -2.31
SCN3AQ9NY46 AC099677.2-201ENST00000436385 175 ntBASIC0.59□□□□□ -2.31
SCN3AQ9NY46 RPS24P1-201ENST00000438550 371 ntBASIC0.59□□□□□ -2.31
SCN3AQ9NY46 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC0.59□□□□□ -2.31
SCN3AQ9NY46 LINC02066-201ENST00000492731 580 ntTSL 4 BASIC0.59□□□□□ -2.31
SCN3AQ9NY46 AC134050.1-201ENST00000495088 933 ntBASIC0.59□□□□□ -2.31
SCN3AQ9NY46 AC116353.3-201ENST00000511215 249 ntBASIC0.59□□□□□ -2.31
SCN3AQ9NY46 RNU6-165P-201ENST00000517170 99 ntBASIC0.59□□□□□ -2.31
SCN3AQ9NY46 IL7-206ENST00000520269 456 ntTSL 3 BASIC0.59□□□□□ -2.31
SCN3AQ9NY46 AL356057.1-201ENST00000533798 831 ntBASIC0.59□□□□□ -2.31
SCN3AQ9NY46 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC0.59□□□□□ -2.31
SCN3AQ9NY46 MTCYBP33-201ENST00000575007 1130 ntBASIC0.59□□□□□ -2.31
SCN3AQ9NY46 AC012507.3-201ENST00000603556 477 ntBASIC0.59□□□□□ -2.31
SCN3AQ9NY46 AC112191.3-201ENST00000604371 277 ntBASIC0.59□□□□□ -2.31
SCN3AQ9NY46 AL031775.1-201ENST00000607014 887 ntBASIC0.59□□□□□ -2.31
SCN3AQ9NY46 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.59□□□□□ -2.31
SCN3AQ9NY46 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC0.59□□□□□ -2.32
SCN3AQ9NY46 MIR302D-201ENST00000362275 68 ntBASIC0.59□□□□□ -2.32
SCN3AQ9NY46 Y_RNA.393-201ENST00000383936 102 ntBASIC0.59□□□□□ -2.32
SCN3AQ9NY46 RNU6-843P-201ENST00000384454 104 ntBASIC0.59□□□□□ -2.32
SCN3AQ9NY46 PIGPP2-201ENST00000411569 458 ntBASIC0.59□□□□□ -2.32
SCN3AQ9NY46 EEF1A1P40-201ENST00000412883 573 ntBASIC0.59□□□□□ -2.32
SCN3AQ9NY46 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC0.59□□□□□ -2.32
SCN3AQ9NY46 AC137499.1-201ENST00000427602 88 ntBASIC0.59□□□□□ -2.32
SCN3AQ9NY46 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC0.59□□□□□ -2.32
SCN3AQ9NY46 EEF1A1P39-201ENST00000440791 250 ntBASIC0.59□□□□□ -2.32
SCN3AQ9NY46 AC243964.1-201ENST00000441814 261 ntBASIC0.59□□□□□ -2.32
SCN3AQ9NY46 PGBD4P5-201ENST00000445958 426 ntBASIC0.59□□□□□ -2.32
SCN3AQ9NY46 HSPE1P13-201ENST00000451143 297 ntBASIC0.59□□□□□ -2.32
SCN3AQ9NY46 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.59□□□□□ -2.32
SCN3AQ9NY46 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC0.59□□□□□ -2.32
SCN3AQ9NY46 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC0.59□□□□□ -2.32
SCN3AQ9NY46 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC0.59□□□□□ -2.32
SCN3AQ9NY46 ZNF736P9Y-201ENST00000439586 1345 ntBASIC0.58□□□□□ -2.32
SCN3AQ9NY46 SPHAR-201ENST00000366688 648 ntAPPRIS P1 BASIC0.58□□□□□ -2.32
SCN3AQ9NY46 RNU6-505P-201ENST00000384427 107 ntBASIC0.58□□□□□ -2.32
SCN3AQ9NY46 MIR544A-201ENST00000384855 91 ntBASIC0.58□□□□□ -2.32
SCN3AQ9NY46 MIR520A-201ENST00000384862 85 ntBASIC0.58□□□□□ -2.32
SCN3AQ9NY46 SNORA48.1-201ENST00000390879 135 ntBASIC0.58□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 104.7 ms