Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 RNU6-1222P-201ENST00000384615 107 ntBASIC2.06□□□□□ -2.08
LIME1Q9H400 MIR218-1-201ENST00000384999 110 ntBASIC2.06□□□□□ -2.08
LIME1Q9H400 RNA5SP247-201ENST00000411181 105 ntBASIC2.06□□□□□ -2.08
LIME1Q9H400 RPL30P16-201ENST00000419341 429 ntBASIC2.06□□□□□ -2.08
LIME1Q9H400 RPL23AP95-201ENST00000426806 265 ntBASIC2.06□□□□□ -2.08
LIME1Q9H400 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC2.06□□□□□ -2.08
LIME1Q9H400 MTCO3P18-201ENST00000440206 761 ntBASIC2.06□□□□□ -2.08
LIME1Q9H400 AC012308.1-201ENST00000451232 178 ntBASIC2.06□□□□□ -2.08
LIME1Q9H400 HMGN2P23-201ENST00000456759 269 ntBASIC2.06□□□□□ -2.08
LIME1Q9H400 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC2.06□□□□□ -2.08
LIME1Q9H400 AL121594.1-201ENST00000475906 575 ntBASIC2.06□□□□□ -2.08
LIME1Q9H400 AC026436.1-201ENST00000510537 270 ntBASIC2.06□□□□□ -2.08
LIME1Q9H400 RNU6-358P-201ENST00000516564 75 ntBASIC2.06□□□□□ -2.08
LIME1Q9H400 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.06□□□□□ -2.08
LIME1Q9H400 PSMA3P-201ENST00000555485 635 ntBASIC2.06□□□□□ -2.08
LIME1Q9H400 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC2.06□□□□□ -2.08
LIME1Q9H400 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC2.06□□□□□ -2.08
LIME1Q9H400 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.06□□□□□ -2.08
LIME1Q9H400 AL713866.2-201ENST00000603579 219 ntBASIC2.06□□□□□ -2.08
LIME1Q9H400 ELOCP5-201ENST00000604924 333 ntBASIC2.06□□□□□ -2.08
LIME1Q9H400 AC064836.2-201ENST00000609491 462 ntBASIC2.06□□□□□ -2.08
LIME1Q9H400 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC2.05□□□□□ -2.08
LIME1Q9H400 RNA5SP393-201ENST00000363423 117 ntBASIC2.05□□□□□ -2.08
LIME1Q9H400 RNU1-51P-201ENST00000365345 176 ntBASIC2.05□□□□□ -2.08
LIME1Q9H400 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
LIME1Q9H400 RNU6-692P-201ENST00000384496 107 ntBASIC2.05□□□□□ -2.08
LIME1Q9H400 MIR95-201ENST00000385072 81 ntBASIC2.05□□□□□ -2.08
LIME1Q9H400 RNU6-293P-201ENST00000411259 106 ntBASIC2.05□□□□□ -2.08
LIME1Q9H400 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC2.05□□□□□ -2.08
LIME1Q9H400 UBE2V1P4-201ENST00000425374 344 ntBASIC2.05□□□□□ -2.08
LIME1Q9H400 MTND1P2-201ENST00000430604 821 ntBASIC2.05□□□□□ -2.08
LIME1Q9H400 RBMX2P4-201ENST00000441256 376 ntBASIC2.05□□□□□ -2.08
LIME1Q9H400 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC2.05□□□□□ -2.08
LIME1Q9H400 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC2.05□□□□□ -2.08
LIME1Q9H400 NFU1P2-201ENST00000448700 469 ntBASIC2.05□□□□□ -2.08
LIME1Q9H400 AC008628.2-201ENST00000502605 298 ntBASIC2.05□□□□□ -2.08
LIME1Q9H400 AK3P2-201ENST00000507976 429 ntBASIC2.05□□□□□ -2.08
LIME1Q9H400 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC2.05□□□□□ -2.08
LIME1Q9H400 AC116337.1-201ENST00000509680 687 ntBASIC2.05□□□□□ -2.08
LIME1Q9H400 SNORA25.11-201ENST00000515935 105 ntBASIC2.05□□□□□ -2.08
LIME1Q9H400 AP000763.2-201ENST00000540641 163 ntBASIC2.05□□□□□ -2.08
LIME1Q9H400 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC2.05□□□□□ -2.08
LIME1Q9H400 AC023824.2-201ENST00000566185 400 ntBASIC2.05□□□□□ -2.08
LIME1Q9H400 AC105137.2-201ENST00000569073 466 ntBASIC2.05□□□□□ -2.08
LIME1Q9H400 MIR5571-201ENST00000577998 113 ntBASIC2.05□□□□□ -2.08
LIME1Q9H400 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC2.05□□□□□ -2.08
LIME1Q9H400 uc_338.15-201ENST00000615470 191 ntBASIC2.05□□□□□ -2.08
LIME1Q9H400 AL449363.1-201ENST00000617815 186 ntBASIC2.05□□□□□ -2.08
LIME1Q9H400 AL136221.1-201ENST00000621449 509 ntBASIC2.05□□□□□ -2.08
LIME1Q9H400 MIR6873-201ENST00000622788 63 ntBASIC2.05□□□□□ -2.08
LIME1Q9H400 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.05□□□□□ -2.08
LIME1Q9H400 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.05□□□□□ -2.08
LIME1Q9H400 ZNF72P-201ENST00000425869 1908 ntBASIC2.05□□□□□ -2.08
LIME1Q9H400 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.05□□□□□ -2.08
LIME1Q9H400 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
LIME1Q9H400 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC2.04□□□□□ -2.08
LIME1Q9H400 Y_RNA.164-201ENST00000363709 102 ntBASIC2.04□□□□□ -2.08
LIME1Q9H400 RNU6-1210P-201ENST00000363775 107 ntBASIC2.04□□□□□ -2.08
LIME1Q9H400 Y_RNA.212-201ENST00000364177 102 ntBASIC2.04□□□□□ -2.08
LIME1Q9H400 RNU6-1141P-201ENST00000364520 107 ntBASIC2.04□□□□□ -2.08
LIME1Q9H400 SNORA26.3-201ENST00000391119 136 ntBASIC2.04□□□□□ -2.08
LIME1Q9H400 MIR450B-201ENST00000401182 78 ntBASIC2.04□□□□□ -2.08
LIME1Q9H400 AP000275.1-201ENST00000411943 390 ntBASIC2.04□□□□□ -2.08
LIME1Q9H400 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
LIME1Q9H400 AC138623.1-201ENST00000418060 216 ntBASIC2.04□□□□□ -2.08
LIME1Q9H400 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.04□□□□□ -2.08
LIME1Q9H400 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC2.04□□□□□ -2.08
LIME1Q9H400 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC2.04□□□□□ -2.08
LIME1Q9H400 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.04□□□□□ -2.08
LIME1Q9H400 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.04□□□□□ -2.08
LIME1Q9H400 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC2.04□□□□□ -2.08
LIME1Q9H400 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC2.04□□□□□ -2.08
LIME1Q9H400 MTND4P23-201ENST00000447723 1363 ntBASIC2.04□□□□□ -2.08
LIME1Q9H400 AC090096.1-201ENST00000489168 390 ntBASIC2.04□□□□□ -2.08
LIME1Q9H400 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC2.04□□□□□ -2.08
LIME1Q9H400 AC092436.3-201ENST00000511788 257 ntBASIC2.04□□□□□ -2.08
LIME1Q9H400 RNU6-864P-201ENST00000516256 108 ntBASIC2.04□□□□□ -2.08
LIME1Q9H400 AF235103.2-201ENST00000525753 346 ntBASIC2.04□□□□□ -2.08
LIME1Q9H400 TRAV32-201ENST00000553993 340 ntBASIC2.04□□□□□ -2.08
LIME1Q9H400 SCOCP1-201ENST00000554676 349 ntBASIC2.04□□□□□ -2.08
LIME1Q9H400 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC2.04□□□□□ -2.08
LIME1Q9H400 AC018638.8-201ENST00000588755 281 ntBASIC2.04□□□□□ -2.08
LIME1Q9H400 AC023043.2-201ENST00000589678 1026 ntBASIC2.04□□□□□ -2.08
LIME1Q9H400 AP001836.1-201ENST00000604675 523 ntBASIC2.04□□□□□ -2.08
LIME1Q9H400 AL356157.2-201ENST00000605122 111 ntBASIC2.04□□□□□ -2.08
LIME1Q9H400 AC103810.6-201ENST00000606708 136 ntBASIC2.04□□□□□ -2.08
LIME1Q9H400 AL138726.1-201ENST00000614873 333 ntBASIC2.04□□□□□ -2.08
LIME1Q9H400 AC007792.1-201ENST00000623023 402 ntBASIC2.04□□□□□ -2.08
LIME1Q9H400 AP000560.1-201ENST00000624150 1937 ntBASIC2.03□□□□□ -2.08
LIME1Q9H400 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC2.03□□□□□ -2.08
LIME1Q9H400 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.08
LIME1Q9H400 AL356292.1-201ENST00000283110 373 ntBASIC2.03□□□□□ -2.08
LIME1Q9H400 RNU6-655P-201ENST00000362858 107 ntBASIC2.03□□□□□ -2.08
LIME1Q9H400 Y_RNA.373-201ENST00000365600 103 ntBASIC2.03□□□□□ -2.08
LIME1Q9H400 RNU6-43P-201ENST00000384302 107 ntBASIC2.03□□□□□ -2.08
LIME1Q9H400 RNU6-1072P-201ENST00000384703 107 ntBASIC2.03□□□□□ -2.08
LIME1Q9H400 RNU6-443P-201ENST00000384780 107 ntBASIC2.03□□□□□ -2.08
LIME1Q9H400 CBX3P9-201ENST00000402326 552 ntBASIC2.03□□□□□ -2.08
LIME1Q9H400 FGF7P8-201ENST00000402994 292 ntBASIC2.03□□□□□ -2.08
LIME1Q9H400 RN7SKP32-201ENST00000410167 303 ntBASIC2.03□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 150.1 ms