Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 Y_RNA.462-201ENST00000384268 102 ntBASIC4.04□□□□□ -1.76
USHBP1Q8N6Y0 MRPL35P1-201ENST00000404272 572 ntBASIC4.04□□□□□ -1.76
USHBP1Q8N6Y0 RPL21P40-201ENST00000428586 483 ntBASIC4.04□□□□□ -1.76
USHBP1Q8N6Y0 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC4.04□□□□□ -1.76
USHBP1Q8N6Y0 AC124916.1-201ENST00000444020 547 ntBASIC4.04□□□□□ -1.76
USHBP1Q8N6Y0 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC4.04□□□□□ -1.76
USHBP1Q8N6Y0 SNRPGP5-201ENST00000456003 220 ntBASIC4.04□□□□□ -1.76
USHBP1Q8N6Y0 ANXA2P1-201ENST00000505539 926 ntBASIC4.04□□□□□ -1.76
USHBP1Q8N6Y0 AC010265.1-201ENST00000513509 211 ntBASIC4.04□□□□□ -1.76
USHBP1Q8N6Y0 RNU4-71P-201ENST00000516258 113 ntBASIC4.04□□□□□ -1.76
USHBP1Q8N6Y0 RNU6-1338P-201ENST00000516328 91 ntBASIC4.04□□□□□ -1.76
USHBP1Q8N6Y0 SNORA70.16-201ENST00000516390 95 ntBASIC4.04□□□□□ -1.76
USHBP1Q8N6Y0 RNU6-1073P-201ENST00000517182 106 ntBASIC4.04□□□□□ -1.76
USHBP1Q8N6Y0 AC136932.1-201ENST00000574771 208 ntBASIC4.04□□□□□ -1.76
USHBP1Q8N6Y0 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC4.04□□□□□ -1.76
USHBP1Q8N6Y0 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC4.04□□□□□ -1.76
USHBP1Q8N6Y0 MIR4300-201ENST00000581016 96 ntBASIC4.04□□□□□ -1.76
USHBP1Q8N6Y0 BX284668.6-201ENST00000606899 438 ntBASIC4.04□□□□□ -1.76
USHBP1Q8N6Y0 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC4.04□□□□□ -1.76
USHBP1Q8N6Y0 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
USHBP1Q8N6Y0 AL672296.1-201ENST00000427780 2158 ntBASIC4.04□□□□□ -1.76
USHBP1Q8N6Y0 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
USHBP1Q8N6Y0 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
USHBP1Q8N6Y0 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
USHBP1Q8N6Y0 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC4.03□□□□□ -1.76
USHBP1Q8N6Y0 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
USHBP1Q8N6Y0 RNU6-600P-201ENST00000362524 99 ntBASIC4.03□□□□□ -1.76
USHBP1Q8N6Y0 Y_RNA.143-201ENST00000363520 106 ntBASIC4.03□□□□□ -1.76
USHBP1Q8N6Y0 RNU6-280P-201ENST00000364145 104 ntBASIC4.03□□□□□ -1.76
USHBP1Q8N6Y0 AC098614.2-201ENST00000426040 255 ntBASIC4.03□□□□□ -1.76
USHBP1Q8N6Y0 BX679664.1-201ENST00000434429 253 ntBASIC4.03□□□□□ -1.76
USHBP1Q8N6Y0 AC108938.1-201ENST00000451204 136 ntBASIC4.03□□□□□ -1.76
USHBP1Q8N6Y0 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC4.03□□□□□ -1.76
USHBP1Q8N6Y0 SNORA31.18-201ENST00000517043 134 ntBASIC4.03□□□□□ -1.76
USHBP1Q8N6Y0 AC022868.1-201ENST00000517767 391 ntBASIC4.03□□□□□ -1.76
USHBP1Q8N6Y0 AP004242.1-201ENST00000533701 349 ntBASIC4.03□□□□□ -1.76
USHBP1Q8N6Y0 TRAV28-201ENST00000557548 323 ntBASIC4.03□□□□□ -1.76
USHBP1Q8N6Y0 UBE2Q2P8-201ENST00000560644 102 ntBASIC4.03□□□□□ -1.76
USHBP1Q8N6Y0 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC4.03□□□□□ -1.76
USHBP1Q8N6Y0 AC060766.3-201ENST00000591442 263 ntBASIC4.03□□□□□ -1.76
USHBP1Q8N6Y0 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC4.03□□□□□ -1.76
USHBP1Q8N6Y0 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC4.03□□□□□ -1.76
USHBP1Q8N6Y0 AC008568.2-201ENST00000623862 2313 ntBASIC4.03□□□□□ -1.77
USHBP1Q8N6Y0 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC4.02□□□□□ -1.77
USHBP1Q8N6Y0 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC4.02□□□□□ -1.77
USHBP1Q8N6Y0 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
USHBP1Q8N6Y0 Y_RNA.54-201ENST00000362766 105 ntBASIC4.02□□□□□ -1.77
USHBP1Q8N6Y0 Y_RNA.180-201ENST00000363867 113 ntBASIC4.02□□□□□ -1.77
USHBP1Q8N6Y0 RNU6-72P-201ENST00000384285 79 ntBASIC4.02□□□□□ -1.77
USHBP1Q8N6Y0 AP000275.1-201ENST00000411943 390 ntBASIC4.02□□□□□ -1.77
USHBP1Q8N6Y0 AC009237.8-201ENST00000445492 379 ntBASIC4.02□□□□□ -1.77
USHBP1Q8N6Y0 snoU13.30-201ENST00000458951 104 ntBASIC4.02□□□□□ -1.77
USHBP1Q8N6Y0 AC136601.2-201ENST00000604356 474 ntBASIC4.02□□□□□ -1.77
USHBP1Q8N6Y0 AC004792.1-201ENST00000614523 137 ntBASIC4.02□□□□□ -1.77
USHBP1Q8N6Y0 FTX_2.1-201ENST00000618816 94 ntBASIC4.02□□□□□ -1.77
USHBP1Q8N6Y0 SCARNA4-202ENST00000625402 129 ntBASIC4.02□□□□□ -1.77
USHBP1Q8N6Y0 U6.99-201ENST00000637524 83 ntBASIC4.02□□□□□ -1.77
USHBP1Q8N6Y0 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC4.01□□□□□ -1.77
USHBP1Q8N6Y0 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
USHBP1Q8N6Y0 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
USHBP1Q8N6Y0 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
USHBP1Q8N6Y0 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC4.01□□□□□ -1.77
USHBP1Q8N6Y0 RNU6-78P-201ENST00000362897 107 ntBASIC4.01□□□□□ -1.77
USHBP1Q8N6Y0 RNU4-9P-201ENST00000364951 139 ntBASIC4.01□□□□□ -1.77
USHBP1Q8N6Y0 SNRPEP9-201ENST00000436794 238 ntBASIC4.01□□□□□ -1.77
USHBP1Q8N6Y0 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC4.01□□□□□ -1.77
USHBP1Q8N6Y0 AL138752.1-201ENST00000452964 351 ntBASIC4.01□□□□□ -1.77
USHBP1Q8N6Y0 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC4.01□□□□□ -1.77
USHBP1Q8N6Y0 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC4.01□□□□□ -1.77
USHBP1Q8N6Y0 RNU6-789P-201ENST00000517105 102 ntBASIC4.01□□□□□ -1.77
USHBP1Q8N6Y0 AC090617.3-201ENST00000573670 475 ntBASIC4.01□□□□□ -1.77
USHBP1Q8N6Y0 UBE2Q2P6-201ENST00000612666 153 ntBASIC4.01□□□□□ -1.77
USHBP1Q8N6Y0 AC240442.1-201ENST00000616055 283 ntBASIC4.01□□□□□ -1.77
USHBP1Q8N6Y0 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
USHBP1Q8N6Y0 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC4.01□□□□□ -1.77
USHBP1Q8N6Y0 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC4.01□□□□□ -1.77
USHBP1Q8N6Y0 AC007785.2-201ENST00000598627 1916 ntBASIC4.01□□□□□ -1.77
USHBP1Q8N6Y0 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC4□□□□□ -1.77
USHBP1Q8N6Y0 AC233981.2-201ENST00000611524 1614 ntBASIC4□□□□□ -1.77
USHBP1Q8N6Y0 Y_RNA.277-201ENST00000364754 102 ntBASIC4□□□□□ -1.77
USHBP1Q8N6Y0 Y_RNA.297-201ENST00000364950 91 ntBASIC4□□□□□ -1.77
USHBP1Q8N6Y0 RNA5SP126-201ENST00000365092 109 ntBASIC4□□□□□ -1.77
USHBP1Q8N6Y0 RPL21P66-201ENST00000426566 466 ntBASIC4□□□□□ -1.77
USHBP1Q8N6Y0 U8.22-201ENST00000459141 133 ntBASIC4□□□□□ -1.77
USHBP1Q8N6Y0 RNU6-1012P-201ENST00000516606 109 ntBASIC4□□□□□ -1.77
USHBP1Q8N6Y0 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC4□□□□□ -1.77
USHBP1Q8N6Y0 MIR4319-201ENST00000577285 85 ntBASIC4□□□□□ -1.77
USHBP1Q8N6Y0 MIR4782-201ENST00000577987 79 ntBASIC4□□□□□ -1.77
USHBP1Q8N6Y0 MIR5047-201ENST00000579212 100 ntBASIC4□□□□□ -1.77
USHBP1Q8N6Y0 IGKV1OR2-6-201ENST00000603485 277 ntBASIC4□□□□□ -1.77
USHBP1Q8N6Y0 AC007318.2-201ENST00000620999 243 ntBASIC4□□□□□ -1.77
USHBP1Q8N6Y0 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC4□□□□□ -1.77
USHBP1Q8N6Y0 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC4□□□□□ -1.77
USHBP1Q8N6Y0 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC4□□□□□ -1.77
USHBP1Q8N6Y0 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC4□□□□□ -1.77
USHBP1Q8N6Y0 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC4□□□□□ -1.77
USHBP1Q8N6Y0 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
USHBP1Q8N6Y0 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
USHBP1Q8N6Y0 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
USHBP1Q8N6Y0 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.99□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 122.5 ms