Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 CECR9-201ENST00000453421 199 ntBASIC0□□□□□ -2.41
USF3Q68DE3 snoU13.25-201ENST00000458945 104 ntBASIC0□□□□□ -2.41
USF3Q68DE3 SNORD60.2-201ENST00000516883 86 ntBASIC0□□□□□ -2.41
USF3Q68DE3 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC0□□□□□ -2.41
USF3Q68DE3 AL356057.1-201ENST00000533798 831 ntBASIC0□□□□□ -2.41
USF3Q68DE3 AC138915.2-201ENST00000569776 97 ntBASIC0□□□□□ -2.41
USF3Q68DE3 AC108676.2-201ENST00000605225 163 ntBASIC0□□□□□ -2.41
USF3Q68DE3 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC0□□□□□ -2.41
USF3Q68DE3 AC107905.1-201ENST00000616204 426 ntBASIC0□□□□□ -2.41
USF3Q68DE3 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC-0□□□□□ -2.41
USF3Q68DE3 RNU6-655P-201ENST00000362858 107 ntBASIC-0.01□□□□□ -2.41
USF3Q68DE3 RNY4P3-201ENST00000365254 95 ntBASIC-0.01□□□□□ -2.41
USF3Q68DE3 RNA5SP259-201ENST00000365541 109 ntBASIC-0.01□□□□□ -2.41
USF3Q68DE3 SNORA8.3-201ENST00000384679 139 ntBASIC-0.01□□□□□ -2.41
USF3Q68DE3 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC-0.01□□□□□ -2.41
USF3Q68DE3 CBX3P9-201ENST00000402326 552 ntBASIC-0.01□□□□□ -2.41
USF3Q68DE3 ARL5AP1-201ENST00000418991 388 ntBASIC-0.01□□□□□ -2.41
USF3Q68DE3 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC-0.01□□□□□ -2.41
USF3Q68DE3 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC-0.01□□□□□ -2.41
USF3Q68DE3 AL008723.1-201ENST00000452181 590 ntTSL 5 BASIC-0.01□□□□□ -2.41
USF3Q68DE3 RPL39P38-201ENST00000467018 153 ntBASIC-0.01□□□□□ -2.41
USF3Q68DE3 MTND1P3-201ENST00000484956 952 ntBASIC-0.01□□□□□ -2.41
USF3Q68DE3 AC009902.1-201ENST00000519351 183 ntBASIC-0.01□□□□□ -2.41
USF3Q68DE3 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC-0.01□□□□□ -2.41
USF3Q68DE3 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC-0.01□□□□□ -2.41
USF3Q68DE3 AC090615.1-201ENST00000577519 154 ntBASIC-0.01□□□□□ -2.41
USF3Q68DE3 AC133794.1-201ENST00000602731 914 ntBASIC-0.01□□□□□ -2.41
USF3Q68DE3 MIR4315-1-201ENST00000636800 73 ntBASIC-0.01□□□□□ -2.41
USF3Q68DE3 MIR4315-2-201ENST00000640925 73 ntBASIC-0.01□□□□□ -2.41
USF3Q68DE3 CASC19-280ENST00000642102 1351 ntBASIC-0.01□□□□□ -2.41
USF3Q68DE3 AC245060.5-201ENST00000610778 3293 ntBASIC-0.01□□□□□ -2.41
USF3Q68DE3 RNU6-969P-201ENST00000383900 105 ntBASIC-0.01□□□□□ -2.41
USF3Q68DE3 RNU6-1005P-201ENST00000384519 107 ntBASIC-0.01□□□□□ -2.41
USF3Q68DE3 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC-0.01□□□□□ -2.41
USF3Q68DE3 AL133475.1-201ENST00000404414 305 ntBASIC-0.01□□□□□ -2.41
USF3Q68DE3 MRPS18CP6-201ENST00000423587 223 ntBASIC-0.01□□□□□ -2.41
USF3Q68DE3 RPS15AP10-201ENST00000432472 382 ntBASIC-0.01□□□□□ -2.41
USF3Q68DE3 AC092427.1-201ENST00000439177 601 ntBASIC-0.01□□□□□ -2.41
USF3Q68DE3 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC-0.01□□□□□ -2.41
USF3Q68DE3 MTND1P9-201ENST00000453775 944 ntBASIC-0.01□□□□□ -2.41
USF3Q68DE3 RNU7-90P-201ENST00000459216 62 ntBASIC-0.01□□□□□ -2.41
USF3Q68DE3 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC-0.01□□□□□ -2.41
USF3Q68DE3 SNORA68.3-201ENST00000515906 83 ntBASIC-0.01□□□□□ -2.41
USF3Q68DE3 RNA5SP134-201ENST00000516492 96 ntBASIC-0.01□□□□□ -2.41
USF3Q68DE3 AC091163.3-201ENST00000518269 1144 ntBASIC-0.01□□□□□ -2.41
USF3Q68DE3 SUMO2P16-201ENST00000519475 264 ntBASIC-0.01□□□□□ -2.41
USF3Q68DE3 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC-0.01□□□□□ -2.41
USF3Q68DE3 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC-0.01□□□□□ -2.41
USF3Q68DE3 AC023824.3-201ENST00000569003 562 ntBASIC-0.01□□□□□ -2.41
USF3Q68DE3 Z98751.3-201ENST00000604447 521 ntBASIC-0.01□□□□□ -2.41
USF3Q68DE3 MIR103A1-201ENST00000362165 78 ntBASIC-0.02□□□□□ -2.41
USF3Q68DE3 RNA5SP368-201ENST00000364298 116 ntBASIC-0.02□□□□□ -2.41
USF3Q68DE3 SNORD116-20-201ENST00000384529 92 ntBASIC-0.02□□□□□ -2.41
USF3Q68DE3 SNORA12-201ENST00000391162 147 ntBASIC-0.02□□□□□ -2.41
USF3Q68DE3 LAMTOR3P2-201ENST00000504479 232 ntBASIC-0.02□□□□□ -2.41
USF3Q68DE3 AC091860.1-201ENST00000505723 432 ntBASIC-0.02□□□□□ -2.41
USF3Q68DE3 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC-0.02□□□□□ -2.41
USF3Q68DE3 AC090502.2-201ENST00000549267 280 ntBASIC-0.02□□□□□ -2.41
USF3Q68DE3 AC007363.1-201ENST00000604736 620 ntBASIC-0.02□□□□□ -2.41
USF3Q68DE3 RNU6-87P-201ENST00000607561 108 ntBASIC-0.02□□□□□ -2.41
USF3Q68DE3 PCMTD1P7-201ENST00000634506 357 ntBASIC-0.02□□□□□ -2.41
USF3Q68DE3 AC068647.2-201ENST00000637380 353 ntBASIC-0.02□□□□□ -2.41
USF3Q68DE3 ANKRD36BP1-202ENST00000604892 1417 ntBASIC-0.02□□□□□ -2.41
USF3Q68DE3 MTND4P5-201ENST00000435821 1374 ntBASIC-0.02□□□□□ -2.41
USF3Q68DE3 RNU4-79P-201ENST00000362764 141 ntBASIC-0.02□□□□□ -2.41
USF3Q68DE3 RNU6-188P-201ENST00000364207 107 ntBASIC-0.02□□□□□ -2.41
USF3Q68DE3 RNU6-622P-201ENST00000384272 103 ntBASIC-0.02□□□□□ -2.41
USF3Q68DE3 BTF3L4P3-201ENST00000418879 476 ntBASIC-0.02□□□□□ -2.41
USF3Q68DE3 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC-0.02□□□□□ -2.41
USF3Q68DE3 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC-0.02□□□□□ -2.41
USF3Q68DE3 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC-0.02□□□□□ -2.41
USF3Q68DE3 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC-0.02□□□□□ -2.41
USF3Q68DE3 AC104692.1-201ENST00000472406 90 ntBASIC-0.02□□□□□ -2.41
USF3Q68DE3 RPF2P2-201ENST00000504693 896 ntBASIC-0.02□□□□□ -2.41
USF3Q68DE3 RNA5SP481-201ENST00000516814 122 ntBASIC-0.02□□□□□ -2.41
USF3Q68DE3 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC-0.02□□□□□ -2.41
USF3Q68DE3 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC-0.02□□□□□ -2.41
USF3Q68DE3 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC-0.02□□□□□ -2.41
USF3Q68DE3 MIR4493-201ENST00000584016 73 ntBASIC-0.02□□□□□ -2.41
USF3Q68DE3 AL353765.1-201ENST00000605514 183 ntBASIC-0.02□□□□□ -2.41
USF3Q68DE3 U6.99-201ENST00000637524 83 ntBASIC-0.02□□□□□ -2.41
USF3Q68DE3 AC092268.1-201ENST00000342691 405 ntBASIC-0.03□□□□□ -2.41
USF3Q68DE3 Y_RNA.25-201ENST00000362528 102 ntBASIC-0.03□□□□□ -2.41
USF3Q68DE3 SNORA36.2-201ENST00000384004 127 ntBASIC-0.03□□□□□ -2.41
USF3Q68DE3 RNU6-114P-201ENST00000384704 105 ntBASIC-0.03□□□□□ -2.41
USF3Q68DE3 MIR214-201ENST00000385214 110 ntBASIC-0.03□□□□□ -2.41
USF3Q68DE3 SNORA16.2-201ENST00000390991 127 ntBASIC-0.03□□□□□ -2.41
USF3Q68DE3 AC073261.1-201ENST00000429409 121 ntBASIC-0.03□□□□□ -2.41
USF3Q68DE3 AC084149.2-201ENST00000438443 797 ntTSL 5 BASIC-0.03□□□□□ -2.41
USF3Q68DE3 AC002542.1-201ENST00000440683 193 ntBASIC-0.03□□□□□ -2.41
USF3Q68DE3 AL606517.1-201ENST00000446914 387 ntBASIC-0.03□□□□□ -2.41
USF3Q68DE3 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC-0.03□□□□□ -2.41
USF3Q68DE3 LINC02066-201ENST00000492731 580 ntTSL 4 BASIC-0.03□□□□□ -2.41
USF3Q68DE3 AC007834.2-201ENST00000536310 343 ntBASIC-0.03□□□□□ -2.41
USF3Q68DE3 BNIP3P6-201ENST00000549284 499 ntBASIC-0.03□□□□□ -2.41
USF3Q68DE3 MIR4645-201ENST00000583158 77 ntBASIC-0.03□□□□□ -2.41
USF3Q68DE3 AC068620.3-201ENST00000602749 560 ntBASIC-0.03□□□□□ -2.41
USF3Q68DE3 AL161798.1-201ENST00000604630 131 ntBASIC-0.03□□□□□ -2.41
USF3Q68DE3 AC021506.2-201ENST00000612354 169 ntBASIC-0.03□□□□□ -2.41
USF3Q68DE3 AC006001.4-201ENST00000622243 395 ntBASIC-0.03□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 101.5 ms