Protein–RNA interactions for Protein: Q15465

SHH, Sonic hedgehog protein, humanhuman

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHHQ15465 DYNLL1P5-201ENST00000467158 270 ntBASIC1.83□□□□□ -2.12
SHHQ15465 RPL23AP41-201ENST00000484754 458 ntBASIC1.83□□□□□ -2.12
SHHQ15465 RPL39P36-201ENST00000490784 156 ntBASIC1.83□□□□□ -2.12
SHHQ15465 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC1.83□□□□□ -2.12
SHHQ15465 AC018710.1-201ENST00000506509 158 ntBASIC1.83□□□□□ -2.12
SHHQ15465 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC1.83□□□□□ -2.12
SHHQ15465 SNORD27.1-201ENST00000516319 72 ntBASIC1.83□□□□□ -2.12
SHHQ15465 MIR892C-201ENST00000516410 77 ntBASIC1.83□□□□□ -2.12
SHHQ15465 RNU1-40P-201ENST00000516816 164 ntBASIC1.83□□□□□ -2.12
SHHQ15465 RNU1-97P-201ENST00000516872 164 ntBASIC1.83□□□□□ -2.12
SHHQ15465 AC109635.3-201ENST00000529536 185 ntBASIC1.83□□□□□ -2.12
SHHQ15465 AC023050.3-201ENST00000541142 333 ntBASIC1.83□□□□□ -2.12
SHHQ15465 SCOCP1-201ENST00000554676 349 ntBASIC1.83□□□□□ -2.12
SHHQ15465 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC1.83□□□□□ -2.12
SHHQ15465 SNORA59B-202ENST00000578183 701 ntBASIC1.83□□□□□ -2.12
SHHQ15465 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC1.83□□□□□ -2.12
SHHQ15465 AC005730.3-201ENST00000583067 366 ntBASIC1.83□□□□□ -2.12
SHHQ15465 AC069294.1-201ENST00000608397 350 ntBASIC1.83□□□□□ -2.12
SHHQ15465 AC098657.3-201ENST00000620434 263 ntBASIC1.83□□□□□ -2.12
SHHQ15465 AC022140.2-201ENST00000623500 188 ntBASIC1.83□□□□□ -2.12
SHHQ15465 AC138627.2-201ENST00000624202 601 ntBASIC1.83□□□□□ -2.12
SHHQ15465 AC100810.6-201ENST00000638068 285 ntBASIC1.83□□□□□ -2.12
SHHQ15465 AC099654.14-201ENST00000638599 341 ntBASIC1.83□□□□□ -2.12
SHHQ15465 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
SHHQ15465 RNU6-1167P-201ENST00000363227 94 ntBASIC1.82□□□□□ -2.12
SHHQ15465 Y_RNA.160-201ENST00000363677 92 ntBASIC1.82□□□□□ -2.12
SHHQ15465 RNY3P3-201ENST00000363816 102 ntBASIC1.82□□□□□ -2.12
SHHQ15465 SNORA3A-201ENST00000364113 130 ntBASIC1.82□□□□□ -2.12
SHHQ15465 SNORA16.1-201ENST00000364597 132 ntBASIC1.82□□□□□ -2.12
SHHQ15465 SNORD115-7-201ENST00000365306 82 ntBASIC1.82□□□□□ -2.12
SHHQ15465 RNU6-108P-201ENST00000365558 107 ntBASIC1.82□□□□□ -2.12
SHHQ15465 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC1.82□□□□□ -2.12
SHHQ15465 RNU6-946P-201ENST00000383878 107 ntBASIC1.82□□□□□ -2.12
SHHQ15465 RNU6-903P-201ENST00000391270 109 ntBASIC1.82□□□□□ -2.12
SHHQ15465 NDUFS5P1-201ENST00000405668 289 ntBASIC1.82□□□□□ -2.12
SHHQ15465 AL356776.1-201ENST00000406574 447 ntBASIC1.82□□□□□ -2.12
SHHQ15465 CYCSP48-201ENST00000417124 323 ntBASIC1.82□□□□□ -2.12
SHHQ15465 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC1.82□□□□□ -2.12
SHHQ15465 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC1.82□□□□□ -2.12
SHHQ15465 RPL36AP53-201ENST00000432891 316 ntBASIC1.82□□□□□ -2.12
SHHQ15465 HMGN2P10-201ENST00000448085 265 ntBASIC1.82□□□□□ -2.12
SHHQ15465 AC117503.1-201ENST00000472241 394 ntBASIC1.82□□□□□ -2.12
SHHQ15465 AC083798.1-201ENST00000472671 131 ntBASIC1.82□□□□□ -2.12
SHHQ15465 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC1.82□□□□□ -2.12
SHHQ15465 RNU6-123P-201ENST00000516163 102 ntBASIC1.82□□□□□ -2.12
SHHQ15465 RNU6-358P-201ENST00000516564 75 ntBASIC1.82□□□□□ -2.12
SHHQ15465 AC107953.1-201ENST00000522216 297 ntBASIC1.82□□□□□ -2.12
SHHQ15465 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC1.82□□□□□ -2.12
SHHQ15465 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC1.82□□□□□ -2.12
SHHQ15465 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC1.82□□□□□ -2.12
SHHQ15465 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC1.82□□□□□ -2.12
SHHQ15465 AC105245.1-201ENST00000581934 244 ntBASIC1.82□□□□□ -2.12
SHHQ15465 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC1.82□□□□□ -2.12
SHHQ15465 AC008521.1-201ENST00000587471 187 ntBASIC1.82□□□□□ -2.12
SHHQ15465 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC1.82□□□□□ -2.12
SHHQ15465 BNIP3P9-201ENST00000603714 553 ntBASIC1.82□□□□□ -2.12
SHHQ15465 AC136443.5-201ENST00000603741 370 ntBASIC1.82□□□□□ -2.12
SHHQ15465 AC021646.1-201ENST00000605469 484 ntBASIC1.82□□□□□ -2.12
SHHQ15465 LARP7P1-201ENST00000605576 316 ntBASIC1.82□□□□□ -2.12
SHHQ15465 uc_338.20-201ENST00000621563 178 ntBASIC1.82□□□□□ -2.12
SHHQ15465 AL133216.2-202ENST00000634512 349 ntBASIC1.82□□□□□ -2.12
SHHQ15465 ATM-228ENST00000639240 498 ntTSL 5 BASIC1.82□□□□□ -2.12
SHHQ15465 RNU6-1120P-201ENST00000362988 108 ntBASIC1.81□□□□□ -2.12
SHHQ15465 RNU6-1252P-201ENST00000363054 104 ntBASIC1.81□□□□□ -2.12
SHHQ15465 Y_RNA.378-201ENST00000365652 113 ntBASIC1.81□□□□□ -2.12
SHHQ15465 SNORA75B-201ENST00000384053 137 ntBASIC1.81□□□□□ -2.12
SHHQ15465 RNU6-1304P-201ENST00000411374 106 ntBASIC1.81□□□□□ -2.12
SHHQ15465 AL030996.1-201ENST00000411430 235 ntBASIC1.81□□□□□ -2.12
SHHQ15465 BTF3L4P3-201ENST00000418879 476 ntBASIC1.81□□□□□ -2.12
SHHQ15465 PDCL2P1-201ENST00000419302 352 ntBASIC1.81□□□□□ -2.12
SHHQ15465 MTND3P21-201ENST00000433774 331 ntBASIC1.81□□□□□ -2.12
SHHQ15465 AL136380.1-201ENST00000447970 162 ntBASIC1.81□□□□□ -2.12
SHHQ15465 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC1.81□□□□□ -2.12
SHHQ15465 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC1.81□□□□□ -2.12
SHHQ15465 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC1.81□□□□□ -2.12
SHHQ15465 AC087884.1-201ENST00000469738 328 ntBASIC1.81□□□□□ -2.12
SHHQ15465 AC079382.1-201ENST00000493346 557 ntBASIC1.81□□□□□ -2.12
SHHQ15465 HMGN1P12-201ENST00000499125 195 ntBASIC1.81□□□□□ -2.12
SHHQ15465 AC116562.3-201ENST00000506136 177 ntBASIC1.81□□□□□ -2.12
SHHQ15465 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC1.81□□□□□ -2.12
SHHQ15465 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC1.81□□□□□ -2.12
SHHQ15465 SNORA20.3-201ENST00000516880 132 ntBASIC1.81□□□□□ -2.12
SHHQ15465 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC1.81□□□□□ -2.12
SHHQ15465 AC068587.5-201ENST00000528506 175 ntBASIC1.81□□□□□ -2.12
SHHQ15465 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.81□□□□□ -2.12
SHHQ15465 CBX3P4-201ENST00000538909 354 ntBASIC1.81□□□□□ -2.12
SHHQ15465 AL157687.1-201ENST00000554853 619 ntBASIC1.81□□□□□ -2.12
SHHQ15465 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC1.81□□□□□ -2.12
SHHQ15465 ZNF519P2-201ENST00000557032 169 ntBASIC1.81□□□□□ -2.12
SHHQ15465 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC1.81□□□□□ -2.12
SHHQ15465 RMST_6.1-201ENST00000611980 203 ntBASIC1.81□□□□□ -2.12
SHHQ15465 Y_RNA.804-201ENST00000615262 101 ntBASIC1.81□□□□□ -2.12
SHHQ15465 U4atac.1-201ENST00000618345 95 ntBASIC1.81□□□□□ -2.12
SHHQ15465 AC024581.2-201ENST00000619986 252 ntBASIC1.81□□□□□ -2.12
SHHQ15465 FER-210ENST00000628534 558 ntTSL 5 BASIC1.81□□□□□ -2.12
SHHQ15465 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.81□□□□□ -2.12
SHHQ15465 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.81□□□□□ -2.12
SHHQ15465 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
SHHQ15465 RNU6-552P-201ENST00000362869 119 ntBASIC1.8□□□□□ -2.12
SHHQ15465 RNU6-486P-201ENST00000363116 107 ntBASIC1.8□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 98.5 ms