Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC3.74□□□□□ -1.81
SF3A1Q15459 AC145146.1-201ENST00000496370 254 ntBASIC3.74□□□□□ -1.81
SF3A1Q15459 RNU6-976P-201ENST00000516086 111 ntBASIC3.74□□□□□ -1.81
SF3A1Q15459 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC3.74□□□□□ -1.81
SF3A1Q15459 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC3.74□□□□□ -1.81
SF3A1Q15459 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC3.74□□□□□ -1.81
SF3A1Q15459 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.74□□□□□ -1.81
SF3A1Q15459 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.74□□□□□ -1.81
SF3A1Q15459 MIR3616-201ENST00000584070 92 ntBASIC3.74□□□□□ -1.81
SF3A1Q15459 AC010928.2-201ENST00000588017 287 ntBASIC3.74□□□□□ -1.81
SF3A1Q15459 AL356280.1-201ENST00000603614 379 ntBASIC3.74□□□□□ -1.81
SF3A1Q15459 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.74□□□□□ -1.81
SF3A1Q15459 AC100812.1-201ENST00000607622 580 ntBASIC3.74□□□□□ -1.81
SF3A1Q15459 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC3.74□□□□□ -1.81
SF3A1Q15459 AC137590.2-201ENST00000619709 240 ntBASIC3.74□□□□□ -1.81
SF3A1Q15459 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC3.74□□□□□ -1.81
SF3A1Q15459 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.74□□□□□ -1.81
SF3A1Q15459 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC3.74□□□□□ -1.81
SF3A1Q15459 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.74□□□□□ -1.81
SF3A1Q15459 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC3.73□□□□□ -1.81
SF3A1Q15459 RNU6-1115P-201ENST00000362490 106 ntBASIC3.73□□□□□ -1.81
SF3A1Q15459 Y_RNA.138-201ENST00000363462 102 ntBASIC3.73□□□□□ -1.81
SF3A1Q15459 DYNLT3P1-201ENST00000378574 347 ntBASIC3.73□□□□□ -1.81
SF3A1Q15459 RNVU1-14-201ENST00000384770 164 ntBASIC3.73□□□□□ -1.81
SF3A1Q15459 SNORA12.2-201ENST00000391040 156 ntBASIC3.73□□□□□ -1.81
SF3A1Q15459 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.73□□□□□ -1.81
SF3A1Q15459 AC105758.1-201ENST00000506038 399 ntBASIC3.73□□□□□ -1.81
SF3A1Q15459 SUB1P3-201ENST00000564581 315 ntBASIC3.73□□□□□ -1.81
SF3A1Q15459 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC3.73□□□□□ -1.81
SF3A1Q15459 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC3.73□□□□□ -1.81
SF3A1Q15459 MIR4276-201ENST00000584832 70 ntBASIC3.73□□□□□ -1.81
SF3A1Q15459 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC3.73□□□□□ -1.81
SF3A1Q15459 MIR1244-1-201ENST00000612829 85 ntBASIC3.73□□□□□ -1.81
SF3A1Q15459 MIR1244-3-201ENST00000635744 85 ntBASIC3.73□□□□□ -1.81
SF3A1Q15459 MIR1244-2-201ENST00000636449 85 ntBASIC3.73□□□□□ -1.81
SF3A1Q15459 MIR1244-4-202ENST00000636813 85 ntBASIC3.73□□□□□ -1.81
SF3A1Q15459 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.73□□□□□ -1.81
SF3A1Q15459 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.73□□□□□ -1.81
SF3A1Q15459 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.72□□□□□ -1.81
SF3A1Q15459 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC3.72□□□□□ -1.81
SF3A1Q15459 RNU1-72P-201ENST00000362976 153 ntBASIC3.72□□□□□ -1.81
SF3A1Q15459 Y_RNA.314-201ENST00000365114 102 ntBASIC3.72□□□□□ -1.81
SF3A1Q15459 SNORD42.2-201ENST00000365570 69 ntBASIC3.72□□□□□ -1.81
SF3A1Q15459 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC3.72□□□□□ -1.81
SF3A1Q15459 Y_RNA.463-201ENST00000384271 102 ntBASIC3.72□□□□□ -1.81
SF3A1Q15459 RNU6-220P-201ENST00000390919 107 ntBASIC3.72□□□□□ -1.81
SF3A1Q15459 HMGB3P2-201ENST00000411913 584 ntBASIC3.72□□□□□ -1.81
SF3A1Q15459 AL354751.2-201ENST00000415471 210 ntBASIC3.72□□□□□ -1.81
SF3A1Q15459 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC3.72□□□□□ -1.81
SF3A1Q15459 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC3.72□□□□□ -1.81
SF3A1Q15459 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC3.72□□□□□ -1.81
SF3A1Q15459 Y_RNA.639-201ENST00000458981 102 ntBASIC3.72□□□□□ -1.81
SF3A1Q15459 AC080013.2-201ENST00000460866 323 ntBASIC3.72□□□□□ -1.81
SF3A1Q15459 AC090515.1-201ENST00000465295 476 ntBASIC3.72□□□□□ -1.81
SF3A1Q15459 RNU6-56P-201ENST00000516986 93 ntBASIC3.72□□□□□ -1.81
SF3A1Q15459 MIR5701-3-201ENST00000578890 82 ntBASIC3.72□□□□□ -1.81
SF3A1Q15459 MIR5701-1-201ENST00000585138 82 ntBASIC3.72□□□□□ -1.81
SF3A1Q15459 AL713866.2-201ENST00000603579 219 ntBASIC3.72□□□□□ -1.81
SF3A1Q15459 MIR5701-2-201ENST00000615634 82 ntBASIC3.72□□□□□ -1.81
SF3A1Q15459 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.72□□□□□ -1.81
SF3A1Q15459 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC3.72□□□□□ -1.81
SF3A1Q15459 AC069528.2-201ENST00000624849 1991 ntBASIC3.72□□□□□ -1.81
SF3A1Q15459 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.72□□□□□ -1.81
SF3A1Q15459 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC3.71□□□□□ -1.82
SF3A1Q15459 RNU4-15P-201ENST00000362613 141 ntBASIC3.71□□□□□ -1.82
SF3A1Q15459 RNA5SP50-201ENST00000363731 107 ntBASIC3.71□□□□□ -1.82
SF3A1Q15459 Y_RNA.428-201ENST00000384078 102 ntBASIC3.71□□□□□ -1.82
SF3A1Q15459 RNU6-1011P-201ENST00000384668 107 ntBASIC3.71□□□□□ -1.82
SF3A1Q15459 Y_RNA.577-201ENST00000384794 101 ntBASIC3.71□□□□□ -1.82
SF3A1Q15459 MIR29B2-201ENST00000385055 81 ntBASIC3.71□□□□□ -1.82
SF3A1Q15459 MIR153-2-201ENST00000385225 87 ntBASIC3.71□□□□□ -1.82
SF3A1Q15459 RNU6-1093P-201ENST00000391194 107 ntBASIC3.71□□□□□ -1.82
SF3A1Q15459 MTCYBP2-201ENST00000407745 171 ntBASIC3.71□□□□□ -1.82
SF3A1Q15459 MIR1302-11-201ENST00000408051 138 ntBASIC3.71□□□□□ -1.82
SF3A1Q15459 MIR1302-9-201ENST00000408365 138 ntBASIC3.71□□□□□ -1.82
SF3A1Q15459 MIR1302-10-201ENST00000408734 138 ntBASIC3.71□□□□□ -1.82
SF3A1Q15459 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
SF3A1Q15459 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC3.71□□□□□ -1.82
SF3A1Q15459 RPL23AP22-201ENST00000437556 453 ntBASIC3.71□□□□□ -1.82
SF3A1Q15459 AC099799.1-201ENST00000439809 192 ntBASIC3.71□□□□□ -1.82
SF3A1Q15459 RNU7-87P-201ENST00000459343 62 ntBASIC3.71□□□□□ -1.82
SF3A1Q15459 AC008155.2-201ENST00000464337 397 ntBASIC3.71□□□□□ -1.82
SF3A1Q15459 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC3.71□□□□□ -1.82
SF3A1Q15459 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC3.71□□□□□ -1.82
SF3A1Q15459 AC104581.2-201ENST00000572227 430 ntBASIC3.71□□□□□ -1.82
SF3A1Q15459 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC3.71□□□□□ -1.82
SF3A1Q15459 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC3.71□□□□□ -1.82
SF3A1Q15459 MIR1302-2-201ENST00000607096 138 ntBASIC3.71□□□□□ -1.82
SF3A1Q15459 AL355802.3-201ENST00000607571 545 ntBASIC3.71□□□□□ -1.82
SF3A1Q15459 RMST_6.1-201ENST00000611980 203 ntBASIC3.71□□□□□ -1.82
SF3A1Q15459 MESTIT1_1.1-201ENST00000618871 140 ntBASIC3.71□□□□□ -1.82
SF3A1Q15459 MIR5739-201ENST00000619803 80 ntBASIC3.71□□□□□ -1.82
SF3A1Q15459 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.71□□□□□ -1.82
SF3A1Q15459 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC3.7□□□□□ -1.82
SF3A1Q15459 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
SF3A1Q15459 SNORD115-32-201ENST00000364079 82 ntBASIC3.7□□□□□ -1.82
SF3A1Q15459 RNU6-541P-201ENST00000384709 110 ntBASIC3.7□□□□□ -1.82
SF3A1Q15459 MIR625-201ENST00000385047 85 ntBASIC3.7□□□□□ -1.82
SF3A1Q15459 UBA52P6-201ENST00000399822 382 ntBASIC3.7□□□□□ -1.82
SF3A1Q15459 SNORA11.2-201ENST00000408318 127 ntBASIC3.7□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 104.1 ms