Protein–RNA interactions for Protein: P49761

CLK3, Dual specificity protein kinase CLK3, humanhuman

Known RBP Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3P49761 MIR3158-1-201ENST00000583596 81 ntBASIC3.19□□□□□ -1.9
CLK3P49761 AL645944.1-201ENST00000603857 493 ntBASIC3.19□□□□□ -1.9
CLK3P49761 Y_RNA.772-201ENST00000606692 102 ntBASIC3.19□□□□□ -1.9
CLK3P49761 AL161629.2-201ENST00000615347 275 ntBASIC3.19□□□□□ -1.9
CLK3P49761 AC006133.1-201ENST00000617106 264 ntBASIC3.19□□□□□ -1.9
CLK3P49761 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CLK3P49761 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC3.19□□□□□ -1.9
CLK3P49761 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CLK3P49761 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CLK3P49761 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
CLK3P49761 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.18□□□□□ -1.9
CLK3P49761 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
CLK3P49761 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
CLK3P49761 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
CLK3P49761 Y_RNA.16-201ENST00000362421 102 ntBASIC3.18□□□□□ -1.9
CLK3P49761 RNU6-227P-201ENST00000362865 103 ntBASIC3.18□□□□□ -1.9
CLK3P49761 Y_RNA.143-201ENST00000363520 106 ntBASIC3.18□□□□□ -1.9
CLK3P49761 Y_RNA.405-201ENST00000383979 100 ntBASIC3.18□□□□□ -1.9
CLK3P49761 Y_RNA.451-201ENST00000384200 100 ntBASIC3.18□□□□□ -1.9
CLK3P49761 Y_RNA.524-201ENST00000384564 100 ntBASIC3.18□□□□□ -1.9
CLK3P49761 Y_RNA.541-201ENST00000384640 113 ntBASIC3.18□□□□□ -1.9
CLK3P49761 Y_RNA.561-201ENST00000384694 100 ntBASIC3.18□□□□□ -1.9
CLK3P49761 MIR449B-201ENST00000384995 97 ntBASIC3.18□□□□□ -1.9
CLK3P49761 AC099548.1-201ENST00000421443 426 ntBASIC3.18□□□□□ -1.9
CLK3P49761 HMGN2P31-201ENST00000432430 273 ntBASIC3.18□□□□□ -1.9
CLK3P49761 AL591043.1-201ENST00000432461 424 ntBASIC3.18□□□□□ -1.9
CLK3P49761 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
CLK3P49761 RPS29P27-201ENST00000463711 170 ntBASIC3.18□□□□□ -1.9
CLK3P49761 RNU7-175P-201ENST00000515915 61 ntBASIC3.18□□□□□ -1.9
CLK3P49761 AC107934.2-201ENST00000518653 310 ntBASIC3.18□□□□□ -1.9
CLK3P49761 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
CLK3P49761 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC3.18□□□□□ -1.9
CLK3P49761 AC010186.2-204ENST00000537668 439 ntBASIC3.18□□□□□ -1.9
CLK3P49761 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.18□□□□□ -1.9
CLK3P49761 AC005476.1-201ENST00000554427 397 ntBASIC3.18□□□□□ -1.9
CLK3P49761 RPL23AP78-201ENST00000599928 470 ntBASIC3.18□□□□□ -1.9
CLK3P49761 AC005046.1-201ENST00000608515 625 ntBASIC3.18□□□□□ -1.9
CLK3P49761 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
CLK3P49761 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC3.17□□□□□ -1.9
CLK3P49761 AC017071.1-201ENST00000564407 2204 ntBASIC3.17□□□□□ -1.9
CLK3P49761 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.17□□□□□ -1.9
CLK3P49761 RNA5SP383-201ENST00000362934 120 ntBASIC3.17□□□□□ -1.9
CLK3P49761 MIR10A-201ENST00000385043 110 ntBASIC3.17□□□□□ -1.9
CLK3P49761 MIR888-201ENST00000401186 77 ntBASIC3.17□□□□□ -1.9
CLK3P49761 PVALB-202ENST00000404171 422 ntTSL 2 BASIC3.17□□□□□ -1.9
CLK3P49761 MIR548I2-201ENST00000408348 149 ntBASIC3.17□□□□□ -1.9
CLK3P49761 RN7SKP111-201ENST00000410349 271 ntBASIC3.17□□□□□ -1.9
CLK3P49761 RN7SKP123-201ENST00000410732 291 ntBASIC3.17□□□□□ -1.9
CLK3P49761 CYCSP35-201ENST00000451978 304 ntBASIC3.17□□□□□ -1.9
CLK3P49761 snoU13.28-201ENST00000459235 104 ntBASIC3.17□□□□□ -1.9
CLK3P49761 RNU7-87P-201ENST00000459343 62 ntBASIC3.17□□□□□ -1.9
CLK3P49761 AC006483.1-201ENST00000487308 313 ntBASIC3.17□□□□□ -1.9
CLK3P49761 ANXA2P1-201ENST00000505539 926 ntBASIC3.17□□□□□ -1.9
CLK3P49761 SNORA67.7-201ENST00000516664 135 ntBASIC3.17□□□□□ -1.9
CLK3P49761 Y_RNA.703-201ENST00000516846 111 ntBASIC3.17□□□□□ -1.9
CLK3P49761 Y_RNA.706-201ENST00000516933 99 ntBASIC3.17□□□□□ -1.9
CLK3P49761 IGHVII-53-1-201ENST00000519538 255 ntBASIC3.17□□□□□ -1.9
CLK3P49761 AP000867.2-201ENST00000532468 320 ntBASIC3.17□□□□□ -1.9
CLK3P49761 CBX3P4-201ENST00000538909 354 ntBASIC3.17□□□□□ -1.9
CLK3P49761 U2.14-201ENST00000615943 113 ntBASIC3.17□□□□□ -1.9
CLK3P49761 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
CLK3P49761 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC3.17□□□□□ -1.9
CLK3P49761 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
CLK3P49761 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC3.16□□□□□ -1.9
CLK3P49761 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.16□□□□□ -1.9
CLK3P49761 ANKRD36BP1-201ENST00000358576 1779 ntBASIC3.16□□□□□ -1.9
CLK3P49761 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
CLK3P49761 RNU6-884P-201ENST00000363889 107 ntBASIC3.16□□□□□ -1.9
CLK3P49761 RNU6-187P-201ENST00000384139 106 ntBASIC3.16□□□□□ -1.9
CLK3P49761 AL079342.1-201ENST00000401460 267 ntBASIC3.16□□□□□ -1.9
CLK3P49761 RN7SKP27-201ENST00000410684 333 ntBASIC3.16□□□□□ -1.9
CLK3P49761 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC3.16□□□□□ -1.9
CLK3P49761 DBIP2-201ENST00000419076 262 ntBASIC3.16□□□□□ -1.9
CLK3P49761 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC3.16□□□□□ -1.9
CLK3P49761 AC010099.1-201ENST00000455434 375 ntBASIC3.16□□□□□ -1.9
CLK3P49761 RNU7-120P-201ENST00000459334 63 ntBASIC3.16□□□□□ -1.9
CLK3P49761 RPL21P129-201ENST00000491732 478 ntBASIC3.16□□□□□ -1.9
CLK3P49761 AC139453.3-201ENST00000493276 369 ntBASIC3.16□□□□□ -1.9
CLK3P49761 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC3.16□□□□□ -1.9
CLK3P49761 SERF1AP1-201ENST00000514575 187 ntBASIC3.16□□□□□ -1.9
CLK3P49761 SNORA25.14-201ENST00000516481 132 ntBASIC3.16□□□□□ -1.9
CLK3P49761 RNU6-255P-201ENST00000516957 105 ntBASIC3.16□□□□□ -1.9
CLK3P49761 AC025755.1-201ENST00000521306 278 ntBASIC3.16□□□□□ -1.9
CLK3P49761 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.16□□□□□ -1.9
CLK3P49761 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC3.16□□□□□ -1.9
CLK3P49761 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.16□□□□□ -1.9
CLK3P49761 MIR3133-201ENST00000583157 78 ntBASIC3.16□□□□□ -1.9
CLK3P49761 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC3.16□□□□□ -1.9
CLK3P49761 AC240442.1-201ENST00000616055 283 ntBASIC3.16□□□□□ -1.9
CLK3P49761 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
CLK3P49761 AC008264.2-201ENST00000610193 3731 ntBASIC3.16□□□□□ -1.9
CLK3P49761 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.16□□□□□ -1.9
CLK3P49761 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.15□□□□□ -1.9
CLK3P49761 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.15□□□□□ -1.9
CLK3P49761 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
CLK3P49761 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.15□□□□□ -1.9
CLK3P49761 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.15□□□□□ -1.9
CLK3P49761 Y_RNA.199-201ENST00000364014 102 ntBASIC3.15□□□□□ -1.91
CLK3P49761 MIR7-3-201ENST00000384898 110 ntBASIC3.15□□□□□ -1.91
CLK3P49761 MIR34A-201ENST00000385130 110 ntBASIC3.15□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 131.7 ms