Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC2.4□□□□□ -2.03
HOXA1P49639 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC2.4□□□□□ -2.03
HOXA1P49639 MIR1302-2-201ENST00000607096 138 ntBASIC2.4□□□□□ -2.03
HOXA1P49639 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC2.4□□□□□ -2.03
HOXA1P49639 AC133104.2-201ENST00000615272 193 ntBASIC2.4□□□□□ -2.03
HOXA1P49639 SNORA43.4-201ENST00000629559 138 ntBASIC2.4□□□□□ -2.03
HOXA1P49639 MTND5P9-201ENST00000503854 1755 ntBASIC2.4□□□□□ -2.03
HOXA1P49639 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.4□□□□□ -2.03
HOXA1P49639 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
HOXA1P49639 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.4□□□□□ -2.03
HOXA1P49639 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
HOXA1P49639 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
HOXA1P49639 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC2.39□□□□□ -2.03
HOXA1P49639 AC073325.2-201ENST00000339545 159 ntBASIC2.39□□□□□ -2.03
HOXA1P49639 RNU6-212P-201ENST00000362642 104 ntBASIC2.39□□□□□ -2.03
HOXA1P49639 RNU6-529P-201ENST00000363383 104 ntBASIC2.39□□□□□ -2.03
HOXA1P49639 RNA5-8SP4-201ENST00000365096 150 ntBASIC2.39□□□□□ -2.03
HOXA1P49639 XGY1-201ENST00000381172 446 ntBASIC2.39□□□□□ -2.03
HOXA1P49639 SNORA7.4-201ENST00000384249 137 ntBASIC2.39□□□□□ -2.03
HOXA1P49639 Y_RNA.504-201ENST00000384481 104 ntBASIC2.39□□□□□ -2.03
HOXA1P49639 RNU6-748P-201ENST00000384648 107 ntBASIC2.39□□□□□ -2.03
HOXA1P49639 MIR183-201ENST00000384958 110 ntBASIC2.39□□□□□ -2.03
HOXA1P49639 MIR34B-201ENST00000385076 84 ntBASIC2.39□□□□□ -2.03
HOXA1P49639 AC096649.2-201ENST00000416186 393 ntBASIC2.39□□□□□ -2.03
HOXA1P49639 AC138623.1-201ENST00000418060 216 ntBASIC2.39□□□□□ -2.03
HOXA1P49639 PMCHL1-202ENST00000423102 261 ntBASIC2.39□□□□□ -2.03
HOXA1P49639 AL160004.2-201ENST00000432935 350 ntBASIC2.39□□□□□ -2.03
HOXA1P49639 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC2.39□□□□□ -2.03
HOXA1P49639 TEX41-209ENST00000451478 452 ntTSL 2 BASIC2.39□□□□□ -2.03
HOXA1P49639 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC2.39□□□□□ -2.03
HOXA1P49639 Y_RNA.631-201ENST00000459607 101 ntBASIC2.39□□□□□ -2.03
HOXA1P49639 AC008155.2-201ENST00000464337 397 ntBASIC2.39□□□□□ -2.03
HOXA1P49639 AC068781.1-201ENST00000488231 618 ntBASIC2.39□□□□□ -2.03
HOXA1P49639 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC2.39□□□□□ -2.03
HOXA1P49639 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC2.39□□□□□ -2.03
HOXA1P49639 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC2.39□□□□□ -2.03
HOXA1P49639 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC2.39□□□□□ -2.03
HOXA1P49639 HSPE1P4-201ENST00000550617 308 ntBASIC2.39□□□□□ -2.03
HOXA1P49639 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.39□□□□□ -2.03
HOXA1P49639 MIR4444-1-201ENST00000581696 74 ntBASIC2.39□□□□□ -2.03
HOXA1P49639 UBL5P2-201ENST00000583788 219 ntBASIC2.39□□□□□ -2.03
HOXA1P49639 MIR4444-2-201ENST00000584390 74 ntBASIC2.39□□□□□ -2.03
HOXA1P49639 RPS15AP11-201ENST00000594193 385 ntBASIC2.39□□□□□ -2.03
HOXA1P49639 AC010620.2-201ENST00000600135 313 ntBASIC2.39□□□□□ -2.03
HOXA1P49639 VN1R107P-201ENST00000601784 209 ntBASIC2.39□□□□□ -2.03
HOXA1P49639 SNRPGP17-201ENST00000603780 214 ntBASIC2.39□□□□□ -2.03
HOXA1P49639 MIR1244-1-201ENST00000612829 85 ntBASIC2.39□□□□□ -2.03
HOXA1P49639 AC040896.1-201ENST00000613819 479 ntBASIC2.39□□□□□ -2.03
HOXA1P49639 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC2.39□□□□□ -2.03
HOXA1P49639 AC007485.1-201ENST00000616755 206 ntBASIC2.39□□□□□ -2.03
HOXA1P49639 MIR7975-201ENST00000619350 68 ntBASIC2.39□□□□□ -2.03
HOXA1P49639 AC018692.3-201ENST00000623929 123 ntBASIC2.39□□□□□ -2.03
HOXA1P49639 AC134503.1-201ENST00000633048 54 ntBASIC2.39□□□□□ -2.03
HOXA1P49639 MIR1244-3-201ENST00000635744 85 ntBASIC2.39□□□□□ -2.03
HOXA1P49639 MIR1244-2-201ENST00000636449 85 ntBASIC2.39□□□□□ -2.03
HOXA1P49639 MIR1244-4-202ENST00000636813 85 ntBASIC2.39□□□□□ -2.03
HOXA1P49639 MIR622-201ENST00000638396 96 ntBASIC2.39□□□□□ -2.03
HOXA1P49639 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC2.39□□□□□ -2.03
HOXA1P49639 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
HOXA1P49639 AC135776.4-201ENST00000624300 1904 ntBASIC2.38□□□□□ -2.03
HOXA1P49639 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.38□□□□□ -2.03
HOXA1P49639 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC2.38□□□□□ -2.03
HOXA1P49639 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC2.38□□□□□ -2.03
HOXA1P49639 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC2.38□□□□□ -2.03
HOXA1P49639 MIR22-201ENST00000362190 85 ntBASIC2.38□□□□□ -2.03
HOXA1P49639 RNY1P16-201ENST00000363063 111 ntBASIC2.38□□□□□ -2.03
HOXA1P49639 RNU6-596P-201ENST00000365395 98 ntBASIC2.38□□□□□ -2.03
HOXA1P49639 SNORD21-201ENST00000383953 95 ntBASIC2.38□□□□□ -2.03
HOXA1P49639 MIR487A-201ENST00000385009 80 ntBASIC2.38□□□□□ -2.03
HOXA1P49639 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC2.38□□□□□ -2.03
HOXA1P49639 AC011816.1-201ENST00000441346 546 ntBASIC2.38□□□□□ -2.03
HOXA1P49639 AL137792.2-201ENST00000443484 235 ntBASIC2.38□□□□□ -2.03
HOXA1P49639 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC2.38□□□□□ -2.03
HOXA1P49639 AL118496.2-201ENST00000448300 230 ntBASIC2.38□□□□□ -2.03
HOXA1P49639 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC2.38□□□□□ -2.03
HOXA1P49639 PRSS3P4-201ENST00000453323 162 ntBASIC2.38□□□□□ -2.03
HOXA1P49639 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC2.38□□□□□ -2.03
HOXA1P49639 SCARNA15.1-201ENST00000516384 125 ntBASIC2.38□□□□□ -2.03
HOXA1P49639 IGLV3-17-201ENST00000519099 244 ntBASIC2.38□□□□□ -2.03
HOXA1P49639 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC2.38□□□□□ -2.03
HOXA1P49639 IGHVII-53-1-201ENST00000519538 255 ntBASIC2.38□□□□□ -2.03
HOXA1P49639 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC2.38□□□□□ -2.03
HOXA1P49639 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC2.38□□□□□ -2.03
HOXA1P49639 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC2.38□□□□□ -2.03
HOXA1P49639 AC007318.2-201ENST00000620999 243 ntBASIC2.38□□□□□ -2.03
HOXA1P49639 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC2.38□□□□□ -2.03
HOXA1P49639 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC2.38□□□□□ -2.03
HOXA1P49639 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.38□□□□□ -2.03
HOXA1P49639 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.38□□□□□ -2.03
HOXA1P49639 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC2.37□□□□□ -2.03
HOXA1P49639 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
HOXA1P49639 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC2.37□□□□□ -2.03
HOXA1P49639 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.37□□□□□ -2.03
HOXA1P49639 ZNF72P-201ENST00000425869 1908 ntBASIC2.37□□□□□ -2.03
HOXA1P49639 Y_RNA.326-201ENST00000365176 113 ntBASIC2.37□□□□□ -2.03
HOXA1P49639 SNORA22B-201ENST00000383876 138 ntBASIC2.37□□□□□ -2.03
HOXA1P49639 Y_RNA.395-201ENST00000383945 109 ntBASIC2.37□□□□□ -2.03
HOXA1P49639 RNU6-784P-201ENST00000384330 106 ntBASIC2.37□□□□□ -2.03
HOXA1P49639 RNA5SP494-201ENST00000410653 129 ntBASIC2.37□□□□□ -2.03
HOXA1P49639 RNU6-1328P-201ENST00000410938 106 ntBASIC2.37□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 121.6 ms