Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 RNA5SP181-201ENST00000410246 98 ntBASIC2.11□□□□□ -2.07
TNFRSF4P43489 RNU2-2P-201ENST00000410396 191 ntBASIC2.11□□□□□ -2.07
TNFRSF4P43489 RNU6-1245P-201ENST00000411130 106 ntBASIC2.11□□□□□ -2.07
TNFRSF4P43489 RNA5SP270-201ENST00000411361 118 ntBASIC2.11□□□□□ -2.07
TNFRSF4P43489 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC2.11□□□□□ -2.07
TNFRSF4P43489 LAMTOR5P1-201ENST00000444290 270 ntBASIC2.11□□□□□ -2.07
TNFRSF4P43489 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC2.11□□□□□ -2.07
TNFRSF4P43489 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC2.11□□□□□ -2.07
TNFRSF4P43489 RNU7-167P-201ENST00000459160 62 ntBASIC2.11□□□□□ -2.07
TNFRSF4P43489 snoU13.14-201ENST00000459372 104 ntBASIC2.11□□□□□ -2.07
TNFRSF4P43489 RPL30P12-201ENST00000474666 353 ntBASIC2.11□□□□□ -2.07
TNFRSF4P43489 AL121594.1-201ENST00000475906 575 ntBASIC2.11□□□□□ -2.07
TNFRSF4P43489 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC2.11□□□□□ -2.07
TNFRSF4P43489 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC2.11□□□□□ -2.07
TNFRSF4P43489 RNU6-377P-201ENST00000515965 102 ntBASIC2.11□□□□□ -2.07
TNFRSF4P43489 RNU6-295P-201ENST00000516901 104 ntBASIC2.11□□□□□ -2.07
TNFRSF4P43489 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
TNFRSF4P43489 CENPUP1-201ENST00000526649 1202 ntBASIC2.11□□□□□ -2.07
TNFRSF4P43489 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC2.11□□□□□ -2.07
TNFRSF4P43489 IMMP1LP2-201ENST00000552954 492 ntBASIC2.11□□□□□ -2.07
TNFRSF4P43489 AL118558.2-201ENST00000556294 238 ntBASIC2.11□□□□□ -2.07
TNFRSF4P43489 AC009127.3-201ENST00000570531 403 ntBASIC2.11□□□□□ -2.07
TNFRSF4P43489 MIR3126-201ENST00000577443 74 ntBASIC2.11□□□□□ -2.07
TNFRSF4P43489 VN1R80P-201ENST00000597126 338 ntBASIC2.11□□□□□ -2.07
TNFRSF4P43489 AP000907.4-201ENST00000604143 237 ntBASIC2.11□□□□□ -2.07
TNFRSF4P43489 RNU6-6P-201ENST00000606623 107 ntBASIC2.11□□□□□ -2.07
TNFRSF4P43489 U2.15-201ENST00000611544 191 ntBASIC2.11□□□□□ -2.07
TNFRSF4P43489 U2.16-201ENST00000613119 191 ntBASIC2.11□□□□□ -2.07
TNFRSF4P43489 U2.12-201ENST00000613778 191 ntBASIC2.11□□□□□ -2.07
TNFRSF4P43489 U2.20-201ENST00000613956 192 ntBASIC2.11□□□□□ -2.07
TNFRSF4P43489 U2.9-201ENST00000615427 191 ntBASIC2.11□□□□□ -2.07
TNFRSF4P43489 AC007014.2-201ENST00000615581 479 ntBASIC2.11□□□□□ -2.07
TNFRSF4P43489 U2.11-201ENST00000616345 191 ntBASIC2.11□□□□□ -2.07
TNFRSF4P43489 U2.2-201ENST00000616535 191 ntBASIC2.11□□□□□ -2.07
TNFRSF4P43489 U2.3-201ENST00000617785 191 ntBASIC2.11□□□□□ -2.07
TNFRSF4P43489 U2.19-201ENST00000618602 191 ntBASIC2.11□□□□□ -2.07
TNFRSF4P43489 RNU2-1-201ENST00000618664 191 ntBASIC2.11□□□□□ -2.07
TNFRSF4P43489 U2.6-201ENST00000619225 191 ntBASIC2.11□□□□□ -2.07
TNFRSF4P43489 U2.5-201ENST00000619465 191 ntBASIC2.11□□□□□ -2.07
TNFRSF4P43489 U2.10-201ENST00000620268 191 ntBASIC2.11□□□□□ -2.07
TNFRSF4P43489 AC010297.1-201ENST00000623948 149 ntBASIC2.11□□□□□ -2.07
TNFRSF4P43489 AC090517.3-201ENST00000625170 141 ntBASIC2.11□□□□□ -2.07
TNFRSF4P43489 MIR3662-201ENST00000637030 95 ntBASIC2.11□□□□□ -2.07
TNFRSF4P43489 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC2.11□□□□□ -2.07
TNFRSF4P43489 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
TNFRSF4P43489 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC2.1□□□□□ -2.07
TNFRSF4P43489 Y_RNA.378-201ENST00000365652 113 ntBASIC2.1□□□□□ -2.07
TNFRSF4P43489 Y_RNA.399-201ENST00000383955 105 ntBASIC2.1□□□□□ -2.07
TNFRSF4P43489 5S_rRNA.2-201ENST00000391293 112 ntBASIC2.1□□□□□ -2.07
TNFRSF4P43489 AIMP1P2-201ENST00000425294 312 ntBASIC2.1□□□□□ -2.07
TNFRSF4P43489 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC2.1□□□□□ -2.07
TNFRSF4P43489 ERLEC1P1-201ENST00000433806 578 ntBASIC2.1□□□□□ -2.07
TNFRSF4P43489 TRAPPC2P3-201ENST00000443200 321 ntBASIC2.1□□□□□ -2.07
TNFRSF4P43489 AC007677.1-201ENST00000445757 515 ntBASIC2.1□□□□□ -2.07
TNFRSF4P43489 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC2.1□□□□□ -2.07
TNFRSF4P43489 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC2.1□□□□□ -2.07
TNFRSF4P43489 NAF1-205ENST00000509434 385 ntTSL 3 BASIC2.1□□□□□ -2.07
TNFRSF4P43489 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.1□□□□□ -2.07
TNFRSF4P43489 RNA5SP182-201ENST00000516064 82 ntBASIC2.1□□□□□ -2.07
TNFRSF4P43489 RNU6-189P-201ENST00000516120 101 ntBASIC2.1□□□□□ -2.07
TNFRSF4P43489 RNU6-991P-201ENST00000516168 107 ntBASIC2.1□□□□□ -2.07
TNFRSF4P43489 AC109479.2-201ENST00000517842 174 ntBASIC2.1□□□□□ -2.07
TNFRSF4P43489 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC2.1□□□□□ -2.07
TNFRSF4P43489 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC2.1□□□□□ -2.07
TNFRSF4P43489 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC2.1□□□□□ -2.07
TNFRSF4P43489 AC023050.3-201ENST00000541142 333 ntBASIC2.1□□□□□ -2.07
TNFRSF4P43489 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC2.1□□□□□ -2.07
TNFRSF4P43489 MIR3941-201ENST00000582572 103 ntBASIC2.1□□□□□ -2.07
TNFRSF4P43489 AC092807.2-201ENST00000609367 243 ntBASIC2.1□□□□□ -2.07
TNFRSF4P43489 RMST_3.1-201ENST00000611651 109 ntBASIC2.1□□□□□ -2.07
TNFRSF4P43489 AL161423.1-201ENST00000613700 262 ntBASIC2.1□□□□□ -2.07
TNFRSF4P43489 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
TNFRSF4P43489 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
TNFRSF4P43489 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.09□□□□□ -2.07
TNFRSF4P43489 Y_RNA.40-201ENST00000362645 93 ntBASIC2.09□□□□□ -2.07
TNFRSF4P43489 MIR514A2-201ENST00000385131 88 ntBASIC2.09□□□□□ -2.07
TNFRSF4P43489 MIR514A3-201ENST00000385132 88 ntBASIC2.09□□□□□ -2.07
TNFRSF4P43489 CBX3P9-201ENST00000402326 552 ntBASIC2.09□□□□□ -2.07
TNFRSF4P43489 POLHP1-201ENST00000411806 470 ntBASIC2.09□□□□□ -2.07
TNFRSF4P43489 ARL5AP1-201ENST00000418991 388 ntBASIC2.09□□□□□ -2.07
TNFRSF4P43489 SNRPEP10-201ENST00000420249 274 ntBASIC2.09□□□□□ -2.07
TNFRSF4P43489 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC2.09□□□□□ -2.07
TNFRSF4P43489 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC2.09□□□□□ -2.07
TNFRSF4P43489 AC007969.2-201ENST00000441891 191 ntBASIC2.09□□□□□ -2.07
TNFRSF4P43489 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC2.09□□□□□ -2.07
TNFRSF4P43489 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC2.09□□□□□ -2.07
TNFRSF4P43489 RPL39P29-201ENST00000447779 157 ntBASIC2.09□□□□□ -2.07
TNFRSF4P43489 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC2.09□□□□□ -2.07
TNFRSF4P43489 HMGN2P23-201ENST00000456759 269 ntBASIC2.09□□□□□ -2.07
TNFRSF4P43489 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC2.09□□□□□ -2.07
TNFRSF4P43489 Y_RNA.654-201ENST00000497848 106 ntBASIC2.09□□□□□ -2.07
TNFRSF4P43489 AC091885.1-201ENST00000506658 268 ntBASIC2.09□□□□□ -2.07
TNFRSF4P43489 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC2.09□□□□□ -2.07
TNFRSF4P43489 AC087241.2-201ENST00000535801 324 ntBASIC2.09□□□□□ -2.07
TNFRSF4P43489 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC2.09□□□□□ -2.07
TNFRSF4P43489 AC078814.3-201ENST00000553036 491 ntBASIC2.09□□□□□ -2.07
TNFRSF4P43489 AC090115.3-201ENST00000553218 849 ntBASIC2.09□□□□□ -2.07
TNFRSF4P43489 OR11H5P-201ENST00000554039 926 ntBASIC2.09□□□□□ -2.07
TNFRSF4P43489 SNORA59B-202ENST00000578183 701 ntBASIC2.09□□□□□ -2.07
TNFRSF4P43489 AL049779.4-201ENST00000604500 156 ntBASIC2.09□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 165.6 ms