Protein–RNA interactions for Protein: P43246

MSH2, DNA mismatch repair protein Msh2, humanhuman

Predictions only

Length 934 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2P43246 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC2.5□□□□□ -2.01
MSH2P43246 CBX3P1-201ENST00000325243 554 ntBASIC2.5□□□□□ -2.01
MSH2P43246 Y_RNA.40-201ENST00000362645 93 ntBASIC2.5□□□□□ -2.01
MSH2P43246 RNU6-859P-201ENST00000362728 107 ntBASIC2.5□□□□□ -2.01
MSH2P43246 Y_RNA.301-201ENST00000364990 103 ntBASIC2.5□□□□□ -2.01
MSH2P43246 RNU6-1032P-201ENST00000384100 107 ntBASIC2.5□□□□□ -2.01
MSH2P43246 RNU6-767P-201ENST00000384132 107 ntBASIC2.5□□□□□ -2.01
MSH2P43246 RNU6-95P-201ENST00000384697 107 ntBASIC2.5□□□□□ -2.01
MSH2P43246 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
MSH2P43246 MTND3P8-201ENST00000412909 339 ntBASIC2.5□□□□□ -2.01
MSH2P43246 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC2.5□□□□□ -2.01
MSH2P43246 AC138393.2-201ENST00000414742 246 ntBASIC2.5□□□□□ -2.01
MSH2P43246 RPL21P111-201ENST00000418453 477 ntBASIC2.5□□□□□ -2.01
MSH2P43246 AL590632.1-201ENST00000424289 371 ntBASIC2.5□□□□□ -2.01
MSH2P43246 AC008267.5-201ENST00000424928 265 ntBASIC2.5□□□□□ -2.01
MSH2P43246 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC2.5□□□□□ -2.01
MSH2P43246 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.5□□□□□ -2.01
MSH2P43246 AC009238.1-201ENST00000442165 424 ntBASIC2.5□□□□□ -2.01
MSH2P43246 AC009237.6-201ENST00000446969 424 ntBASIC2.5□□□□□ -2.01
MSH2P43246 AC011753.1-201ENST00000451001 220 ntBASIC2.5□□□□□ -2.01
MSH2P43246 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC2.5□□□□□ -2.01
MSH2P43246 SNORD109B-201ENST00000458961 67 ntBASIC2.5□□□□□ -2.01
MSH2P43246 SNORD109A-201ENST00000459128 67 ntBASIC2.5□□□□□ -2.01
MSH2P43246 snoU13.14-201ENST00000459372 104 ntBASIC2.5□□□□□ -2.01
MSH2P43246 RPL9P9-202ENST00000466501 579 ntBASIC2.5□□□□□ -2.01
MSH2P43246 RNA5SP356-201ENST00000515972 94 ntBASIC2.5□□□□□ -2.01
MSH2P43246 SNORA20.3-201ENST00000516880 132 ntBASIC2.5□□□□□ -2.01
MSH2P43246 RNU6-273P-201ENST00000516937 96 ntBASIC2.5□□□□□ -2.01
MSH2P43246 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC2.5□□□□□ -2.01
MSH2P43246 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC2.5□□□□□ -2.01
MSH2P43246 AC026464.5-201ENST00000562497 722 ntBASIC2.5□□□□□ -2.01
MSH2P43246 MIR4742-201ENST00000581069 85 ntBASIC2.5□□□□□ -2.01
MSH2P43246 AC091135.1-201ENST00000585943 307 ntBASIC2.5□□□□□ -2.01
MSH2P43246 AP001836.1-201ENST00000604675 523 ntBASIC2.5□□□□□ -2.01
MSH2P43246 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC2.5□□□□□ -2.01
MSH2P43246 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC2.5□□□□□ -2.01
MSH2P43246 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC2.49□□□□□ -2.01
MSH2P43246 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
MSH2P43246 RNU6-212P-201ENST00000362642 104 ntBASIC2.49□□□□□ -2.01
MSH2P43246 RNU6-1317P-201ENST00000364582 104 ntBASIC2.49□□□□□ -2.01
MSH2P43246 RNU6-43P-201ENST00000384302 107 ntBASIC2.49□□□□□ -2.01
MSH2P43246 SNORA41-201ENST00000384675 132 ntBASIC2.49□□□□□ -2.01
MSH2P43246 MIR196B-201ENST00000384852 84 ntBASIC2.49□□□□□ -2.01
MSH2P43246 RNU2-52P-201ENST00000410680 190 ntBASIC2.49□□□□□ -2.01
MSH2P43246 RNU6-325P-201ENST00000411132 105 ntBASIC2.49□□□□□ -2.01
MSH2P43246 AL030996.1-201ENST00000411430 235 ntBASIC2.49□□□□□ -2.01
MSH2P43246 AP000275.1-201ENST00000411943 390 ntBASIC2.49□□□□□ -2.01
MSH2P43246 AC063976.3-201ENST00000426849 329 ntBASIC2.49□□□□□ -2.01
MSH2P43246 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC2.49□□□□□ -2.01
MSH2P43246 AC092473.1-201ENST00000441098 221 ntBASIC2.49□□□□□ -2.01
MSH2P43246 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC2.49□□□□□ -2.01
MSH2P43246 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC2.49□□□□□ -2.01
MSH2P43246 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC2.49□□□□□ -2.01
MSH2P43246 AL513328.1-201ENST00000446460 224 ntBASIC2.49□□□□□ -2.01
MSH2P43246 AL031659.1-201ENST00000447075 539 ntBASIC2.49□□□□□ -2.01
MSH2P43246 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC2.49□□□□□ -2.01
MSH2P43246 MTND1P11-201ENST00000456661 876 ntBASIC2.49□□□□□ -2.01
MSH2P43246 MTCO1P29-201ENST00000496868 288 ntBASIC2.49□□□□□ -2.01
MSH2P43246 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC2.49□□□□□ -2.01
MSH2P43246 AC046134.1-201ENST00000514454 666 ntBASIC2.49□□□□□ -2.01
MSH2P43246 RNU2-53P-201ENST00000516257 147 ntBASIC2.49□□□□□ -2.01
MSH2P43246 RNU6-612P-201ENST00000516909 102 ntBASIC2.49□□□□□ -2.01
MSH2P43246 AC118273.2-201ENST00000532092 465 ntBASIC2.49□□□□□ -2.01
MSH2P43246 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC2.49□□□□□ -2.01
MSH2P43246 AC009127.3-201ENST00000570531 403 ntBASIC2.49□□□□□ -2.01
MSH2P43246 MIR4319-201ENST00000577285 85 ntBASIC2.49□□□□□ -2.01
MSH2P43246 AC008121.3-201ENST00000618726 433 ntBASIC2.49□□□□□ -2.01
MSH2P43246 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC2.49□□□□□ -2.01
MSH2P43246 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC2.49□□□□□ -2.01
MSH2P43246 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
MSH2P43246 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.48□□□□□ -2.01
MSH2P43246 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.48□□□□□ -2.01
MSH2P43246 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
MSH2P43246 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC2.48□□□□□ -2.01
MSH2P43246 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
MSH2P43246 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.48□□□□□ -2.01
MSH2P43246 RNU6-1285P-201ENST00000363480 105 ntBASIC2.48□□□□□ -2.01
MSH2P43246 RNU6-1141P-201ENST00000364520 107 ntBASIC2.48□□□□□ -2.01
MSH2P43246 SNORD32A-201ENST00000364805 84 ntBASIC2.48□□□□□ -2.01
MSH2P43246 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC2.48□□□□□ -2.01
MSH2P43246 RNA5SP270-201ENST00000411361 118 ntBASIC2.48□□□□□ -2.01
MSH2P43246 AIMP1P2-201ENST00000425294 312 ntBASIC2.48□□□□□ -2.01
MSH2P43246 ARL5AP4-201ENST00000430731 512 ntBASIC2.48□□□□□ -2.01
MSH2P43246 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC2.48□□□□□ -2.01
MSH2P43246 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC2.48□□□□□ -2.01
MSH2P43246 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC2.48□□□□□ -2.01
MSH2P43246 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.48□□□□□ -2.01
MSH2P43246 PMCHL2-203ENST00000457791 237 ntBASIC2.48□□□□□ -2.01
MSH2P43246 RNU7-187P-201ENST00000458985 68 ntBASIC2.48□□□□□ -2.01
MSH2P43246 U8.21-201ENST00000459536 136 ntBASIC2.48□□□□□ -2.01
MSH2P43246 AC130509.1-201ENST00000464158 433 ntBASIC2.48□□□□□ -2.01
MSH2P43246 AL121594.1-201ENST00000475906 575 ntBASIC2.48□□□□□ -2.01
MSH2P43246 RNA5SP82-201ENST00000516707 92 ntBASIC2.48□□□□□ -2.01
MSH2P43246 RNU6-566P-201ENST00000516790 107 ntBASIC2.48□□□□□ -2.01
MSH2P43246 RNA5SP454-201ENST00000517231 127 ntBASIC2.48□□□□□ -2.01
MSH2P43246 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC2.48□□□□□ -2.01
MSH2P43246 CYCSP26-201ENST00000534107 320 ntBASIC2.48□□□□□ -2.01
MSH2P43246 CPDP1-201ENST00000579660 283 ntBASIC2.48□□□□□ -2.01
MSH2P43246 AL356157.2-201ENST00000605122 111 ntBASIC2.48□□□□□ -2.01
MSH2P43246 AL022345.1-201ENST00000607292 135 ntBASIC2.48□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 118.1 ms