Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC2.68□□□□□ -1.98
SHMT1P34896 MTND5P30-201ENST00000452896 1731 ntBASIC2.68□□□□□ -1.98
SHMT1P34896 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
SHMT1P34896 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
SHMT1P34896 RNU6-622P-201ENST00000384272 103 ntBASIC2.68□□□□□ -1.98
SHMT1P34896 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
SHMT1P34896 MIR548K-201ENST00000408406 116 ntBASIC2.68□□□□□ -1.98
SHMT1P34896 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC2.68□□□□□ -1.98
SHMT1P34896 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
SHMT1P34896 MTND1P11-201ENST00000456661 876 ntBASIC2.68□□□□□ -1.98
SHMT1P34896 RPL9P9-202ENST00000466501 579 ntBASIC2.68□□□□□ -1.98
SHMT1P34896 RPL22P13-201ENST00000493291 347 ntBASIC2.68□□□□□ -1.98
SHMT1P34896 AC114801.2-201ENST00000503825 781 ntBASIC2.68□□□□□ -1.98
SHMT1P34896 SMURF2P1-201ENST00000514992 481 ntBASIC2.68□□□□□ -1.98
SHMT1P34896 RNU6-507P-201ENST00000516045 100 ntBASIC2.68□□□□□ -1.98
SHMT1P34896 SCARNA17.1-201ENST00000516211 143 ntBASIC2.68□□□□□ -1.98
SHMT1P34896 SCARNA17.2-201ENST00000516334 143 ntBASIC2.68□□□□□ -1.98
SHMT1P34896 Y_RNA.691-201ENST00000516611 103 ntBASIC2.68□□□□□ -1.98
SHMT1P34896 SNORA31.18-201ENST00000517043 134 ntBASIC2.68□□□□□ -1.98
SHMT1P34896 AP005639.2-201ENST00000527592 928 ntBASIC2.68□□□□□ -1.98
SHMT1P34896 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC2.68□□□□□ -1.98
SHMT1P34896 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.68□□□□□ -1.98
SHMT1P34896 SNRPGP18-201ENST00000553000 214 ntBASIC2.68□□□□□ -1.98
SHMT1P34896 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC2.68□□□□□ -1.98
SHMT1P34896 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC2.68□□□□□ -1.98
SHMT1P34896 AC104984.5-201ENST00000586878 94 ntBASIC2.68□□□□□ -1.98
SHMT1P34896 SCARNA17.4-201ENST00000614296 143 ntBASIC2.68□□□□□ -1.98
SHMT1P34896 MTND4P23-201ENST00000447723 1363 ntBASIC2.68□□□□□ -1.98
SHMT1P34896 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.68□□□□□ -1.98
SHMT1P34896 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.68□□□□□ -1.98
SHMT1P34896 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
SHMT1P34896 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC2.67□□□□□ -1.98
SHMT1P34896 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC2.67□□□□□ -1.98
SHMT1P34896 AL359854.1-201ENST00000614203 1594 ntBASIC2.67□□□□□ -1.98
SHMT1P34896 Y_RNA.70-201ENST00000362886 110 ntBASIC2.67□□□□□ -1.98
SHMT1P34896 Y_RNA.184-201ENST00000363884 108 ntBASIC2.67□□□□□ -1.98
SHMT1P34896 SNORA68.1-201ENST00000364537 132 ntBASIC2.67□□□□□ -1.98
SHMT1P34896 RNU1-91P-201ENST00000364746 163 ntBASIC2.67□□□□□ -1.98
SHMT1P34896 RNU5E-4P-201ENST00000364931 120 ntBASIC2.67□□□□□ -1.98
SHMT1P34896 RNU6-933P-201ENST00000384424 107 ntBASIC2.67□□□□□ -1.98
SHMT1P34896 MIR221-201ENST00000385135 110 ntBASIC2.67□□□□□ -1.98
SHMT1P34896 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC2.67□□□□□ -1.98
SHMT1P34896 AL590632.1-201ENST00000424289 371 ntBASIC2.67□□□□□ -1.98
SHMT1P34896 FABP5P14-201ENST00000437273 393 ntBASIC2.67□□□□□ -1.98
SHMT1P34896 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
SHMT1P34896 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.67□□□□□ -1.98
SHMT1P34896 AC007969.2-201ENST00000441891 191 ntBASIC2.67□□□□□ -1.98
SHMT1P34896 AC107399.1-201ENST00000451226 265 ntBASIC2.67□□□□□ -1.98
SHMT1P34896 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC2.67□□□□□ -1.98
SHMT1P34896 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC2.67□□□□□ -1.98
SHMT1P34896 snoU13.26-201ENST00000459452 105 ntBASIC2.67□□□□□ -1.98
SHMT1P34896 RPS27P27-201ENST00000498779 255 ntBASIC2.67□□□□□ -1.98
SHMT1P34896 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC2.67□□□□□ -1.98
SHMT1P34896 SNORA31.6-201ENST00000516241 130 ntBASIC2.67□□□□□ -1.98
SHMT1P34896 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC2.67□□□□□ -1.98
SHMT1P34896 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.67□□□□□ -1.98
SHMT1P34896 IGKV3-31-201ENST00000523109 329 ntBASIC2.67□□□□□ -1.98
SHMT1P34896 AC004486.1-201ENST00000546846 233 ntBASIC2.67□□□□□ -1.98
SHMT1P34896 AC105137.2-201ENST00000569073 466 ntBASIC2.67□□□□□ -1.98
SHMT1P34896 AC090897.2-201ENST00000581715 130 ntBASIC2.67□□□□□ -1.98
SHMT1P34896 RPS15AP11-201ENST00000594193 385 ntBASIC2.67□□□□□ -1.98
SHMT1P34896 AC009994.1-201ENST00000606889 253 ntBASIC2.67□□□□□ -1.98
SHMT1P34896 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.67□□□□□ -1.98
SHMT1P34896 MIR6766-201ENST00000622641 72 ntBASIC2.67□□□□□ -1.98
SHMT1P34896 AC097372.5-201ENST00000623665 376 ntBASIC2.67□□□□□ -1.98
SHMT1P34896 MIR7515-201ENST00000637837 67 ntBASIC2.67□□□□□ -1.98
SHMT1P34896 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.67□□□□□ -1.98
SHMT1P34896 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.66□□□□□ -1.98
SHMT1P34896 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC2.66□□□□□ -1.98
SHMT1P34896 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.66□□□□□ -1.98
SHMT1P34896 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC2.66□□□□□ -1.98
SHMT1P34896 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
SHMT1P34896 SNORD114-19-201ENST00000363072 75 ntBASIC2.66□□□□□ -1.98
SHMT1P34896 Y_RNA.263-201ENST00000364659 114 ntBASIC2.66□□□□□ -1.98
SHMT1P34896 U8.8-201ENST00000365399 135 ntBASIC2.66□□□□□ -1.98
SHMT1P34896 MIR627-201ENST00000384979 97 ntBASIC2.66□□□□□ -1.98
SHMT1P34896 AL133475.1-201ENST00000404414 305 ntBASIC2.66□□□□□ -1.98
SHMT1P34896 RNU6-325P-201ENST00000411132 105 ntBASIC2.66□□□□□ -1.98
SHMT1P34896 AC022028.1-201ENST00000412054 408 ntBASIC2.66□□□□□ -1.98
SHMT1P34896 AC138623.1-201ENST00000418060 216 ntBASIC2.66□□□□□ -1.98
SHMT1P34896 BX276092.3-201ENST00000424182 230 ntBASIC2.66□□□□□ -1.98
SHMT1P34896 AC092427.1-202ENST00000430569 476 ntBASIC2.66□□□□□ -1.98
SHMT1P34896 AC243964.1-201ENST00000441814 261 ntBASIC2.66□□□□□ -1.98
SHMT1P34896 AC009296.1-201ENST00000443146 155 ntBASIC2.66□□□□□ -1.98
SHMT1P34896 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC2.66□□□□□ -1.98
SHMT1P34896 PCMTD1P1-201ENST00000455560 355 ntBASIC2.66□□□□□ -1.98
SHMT1P34896 RNU7-187P-201ENST00000458985 68 ntBASIC2.66□□□□□ -1.98
SHMT1P34896 RPL36AP48-201ENST00000485521 314 ntBASIC2.66□□□□□ -1.98
SHMT1P34896 AC018437.1-201ENST00000492214 406 ntBASIC2.66□□□□□ -1.98
SHMT1P34896 MTND5P5-201ENST00000503764 376 ntBASIC2.66□□□□□ -1.98
SHMT1P34896 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.66□□□□□ -1.98
SHMT1P34896 RPPH1-2P-201ENST00000516688 293 ntBASIC2.66□□□□□ -1.98
SHMT1P34896 AC109329.1-201ENST00000518744 317 ntBASIC2.66□□□□□ -1.98
SHMT1P34896 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC2.66□□□□□ -1.98
SHMT1P34896 MIR4765-201ENST00000585007 77 ntBASIC2.66□□□□□ -1.98
SHMT1P34896 AL356157.2-201ENST00000605122 111 ntBASIC2.66□□□□□ -1.98
SHMT1P34896 AC010329.5-201ENST00000623497 2174 ntBASIC2.66□□□□□ -1.98
SHMT1P34896 RNU6-1010P-201ENST00000362757 107 ntBASIC2.65□□□□□ -1.99
SHMT1P34896 RNU6-1317P-201ENST00000364582 104 ntBASIC2.65□□□□□ -1.99
SHMT1P34896 Y_RNA.339-201ENST00000365325 102 ntBASIC2.65□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 182.1 ms