Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 MIR4742-201ENST00000581069 85 ntBASIC2.68□□□□□ -1.98
HOXC9P31274 AC064836.2-201ENST00000609491 462 ntBASIC2.68□□□□□ -1.98
HOXC9P31274 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC2.68□□□□□ -1.98
HOXC9P31274 U4.7-201ENST00000638126 106 ntBASIC2.68□□□□□ -1.98
HOXC9P31274 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.68□□□□□ -1.98
HOXC9P31274 RBBP8P1-201ENST00000449447 1844 ntBASIC2.68□□□□□ -1.98
HOXC9P31274 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC2.67□□□□□ -1.98
HOXC9P31274 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC2.67□□□□□ -1.98
HOXC9P31274 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
HOXC9P31274 SNORA72.1-201ENST00000363485 129 ntBASIC2.67□□□□□ -1.98
HOXC9P31274 Y_RNA.279-201ENST00000364763 95 ntBASIC2.67□□□□□ -1.98
HOXC9P31274 RNY3P14-201ENST00000384309 102 ntBASIC2.67□□□□□ -1.98
HOXC9P31274 RNU6-748P-201ENST00000384648 107 ntBASIC2.67□□□□□ -1.98
HOXC9P31274 MIR583-201ENST00000384846 75 ntBASIC2.67□□□□□ -1.98
HOXC9P31274 RNU6-510P-201ENST00000391239 108 ntBASIC2.67□□□□□ -1.98
HOXC9P31274 AC027124.2-201ENST00000428249 105 ntBASIC2.67□□□□□ -1.98
HOXC9P31274 AL591043.1-201ENST00000432461 424 ntBASIC2.67□□□□□ -1.98
HOXC9P31274 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.67□□□□□ -1.98
HOXC9P31274 AC098614.3-201ENST00000438957 440 ntBASIC2.67□□□□□ -1.98
HOXC9P31274 USP9YP8-201ENST00000441913 500 ntBASIC2.67□□□□□ -1.98
HOXC9P31274 AC008571.1-201ENST00000467232 300 ntBASIC2.67□□□□□ -1.98
HOXC9P31274 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC2.67□□□□□ -1.98
HOXC9P31274 RPL39P5-202ENST00000512505 151 ntBASIC2.67□□□□□ -1.98
HOXC9P31274 RNU6-864P-201ENST00000516256 108 ntBASIC2.67□□□□□ -1.98
HOXC9P31274 AC109479.2-201ENST00000517842 174 ntBASIC2.67□□□□□ -1.98
HOXC9P31274 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC2.67□□□□□ -1.98
HOXC9P31274 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC2.67□□□□□ -1.98
HOXC9P31274 GLYCAM1-201ENST00000546596 285 ntBASIC2.67□□□□□ -1.98
HOXC9P31274 AC026371.1-201ENST00000551867 419 ntBASIC2.67□□□□□ -1.98
HOXC9P31274 MIR5089-201ENST00000580047 84 ntBASIC2.67□□□□□ -1.98
HOXC9P31274 MIR3672-201ENST00000584290 82 ntBASIC2.67□□□□□ -1.98
HOXC9P31274 SNRPGP19-201ENST00000603826 189 ntBASIC2.67□□□□□ -1.98
HOXC9P31274 MIR3529-201ENST00000637713 78 ntBASIC2.67□□□□□ -1.98
HOXC9P31274 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
HOXC9P31274 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
HOXC9P31274 RNU1-17P-201ENST00000363022 152 ntBASIC2.66□□□□□ -1.98
HOXC9P31274 Y_RNA.88-201ENST00000363029 99 ntBASIC2.66□□□□□ -1.98
HOXC9P31274 RNU6-336P-201ENST00000364891 107 ntBASIC2.66□□□□□ -1.98
HOXC9P31274 RNU6-1329P-201ENST00000365664 107 ntBASIC2.66□□□□□ -1.98
HOXC9P31274 RNU6-1013P-201ENST00000384180 107 ntBASIC2.66□□□□□ -1.98
HOXC9P31274 MIR627-201ENST00000384979 97 ntBASIC2.66□□□□□ -1.98
HOXC9P31274 AL117339.3-201ENST00000418733 162 ntBASIC2.66□□□□□ -1.98
HOXC9P31274 AL590632.1-201ENST00000424289 371 ntBASIC2.66□□□□□ -1.98
HOXC9P31274 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC2.66□□□□□ -1.98
HOXC9P31274 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC2.66□□□□□ -1.98
HOXC9P31274 MTND4P18-201ENST00000447010 465 ntBASIC2.66□□□□□ -1.98
HOXC9P31274 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.66□□□□□ -1.98
HOXC9P31274 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC2.66□□□□□ -1.98
HOXC9P31274 RNU6-329P-201ENST00000459618 107 ntBASIC2.66□□□□□ -1.98
HOXC9P31274 SEM1P1-201ENST00000506694 209 ntBASIC2.66□□□□□ -1.98
HOXC9P31274 MTCYBP40-201ENST00000509390 1135 ntBASIC2.66□□□□□ -1.98
HOXC9P31274 AC092436.3-201ENST00000511788 257 ntBASIC2.66□□□□□ -1.98
HOXC9P31274 RNA5SP182-201ENST00000516064 82 ntBASIC2.66□□□□□ -1.98
HOXC9P31274 RNA5SP458-201ENST00000516188 119 ntBASIC2.66□□□□□ -1.98
HOXC9P31274 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC2.66□□□□□ -1.98
HOXC9P31274 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.66□□□□□ -1.98
HOXC9P31274 AC010186.2-204ENST00000537668 439 ntBASIC2.66□□□□□ -1.98
HOXC9P31274 HSPE1P20-201ENST00000538133 289 ntBASIC2.66□□□□□ -1.98
HOXC9P31274 CR383656.8-201ENST00000549046 145 ntBASIC2.66□□□□□ -1.98
HOXC9P31274 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC2.66□□□□□ -1.98
HOXC9P31274 AC103810.1-201ENST00000579873 453 ntBASIC2.66□□□□□ -1.98
HOXC9P31274 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC2.66□□□□□ -1.98
HOXC9P31274 AP000787.2-201ENST00000604432 568 ntBASIC2.66□□□□□ -1.98
HOXC9P31274 AC021646.1-201ENST00000605469 484 ntBASIC2.66□□□□□ -1.98
HOXC9P31274 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC2.66□□□□□ -1.98
HOXC9P31274 MIR7515-201ENST00000637837 67 ntBASIC2.66□□□□□ -1.98
HOXC9P31274 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC2.66□□□□□ -1.98
HOXC9P31274 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
HOXC9P31274 RNU6-105P-201ENST00000363909 104 ntBASIC2.65□□□□□ -1.99
HOXC9P31274 Y_RNA.212-201ENST00000364177 102 ntBASIC2.65□□□□□ -1.99
HOXC9P31274 RNU6-1106P-201ENST00000390845 107 ntBASIC2.65□□□□□ -1.99
HOXC9P31274 MTND3P8-201ENST00000412909 339 ntBASIC2.65□□□□□ -1.99
HOXC9P31274 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC2.65□□□□□ -1.99
HOXC9P31274 AC104435.1-201ENST00000483483 166 ntBASIC2.65□□□□□ -1.99
HOXC9P31274 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC2.65□□□□□ -1.99
HOXC9P31274 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC2.65□□□□□ -1.99
HOXC9P31274 RNU6-1088P-201ENST00000516850 104 ntBASIC2.65□□□□□ -1.99
HOXC9P31274 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC2.65□□□□□ -1.99
HOXC9P31274 AC005668.1-201ENST00000571142 476 ntBASIC2.65□□□□□ -1.99
HOXC9P31274 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC2.65□□□□□ -1.99
HOXC9P31274 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC2.65□□□□□ -1.99
HOXC9P31274 AC009314.1-201ENST00000603871 304 ntBASIC2.65□□□□□ -1.99
HOXC9P31274 AL138726.1-201ENST00000614873 333 ntBASIC2.65□□□□□ -1.99
HOXC9P31274 AL133216.2-202ENST00000634512 349 ntBASIC2.65□□□□□ -1.99
HOXC9P31274 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC2.65□□□□□ -1.99
HOXC9P31274 ATP8A2P2-201ENST00000437678 1568 ntBASIC2.65□□□□□ -1.99
HOXC9P31274 RNU6-845P-201ENST00000362578 103 ntBASIC2.64□□□□□ -1.99
HOXC9P31274 RNU6-128P-201ENST00000383976 107 ntBASIC2.64□□□□□ -1.99
HOXC9P31274 SNORA40.18-201ENST00000391200 128 ntBASIC2.64□□□□□ -1.99
HOXC9P31274 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
HOXC9P31274 AC019129.1-201ENST00000403786 261 ntBASIC2.64□□□□□ -1.99
HOXC9P31274 RNU6-293P-201ENST00000411259 106 ntBASIC2.64□□□□□ -1.99
HOXC9P31274 RNA5SP492-201ENST00000411330 114 ntBASIC2.64□□□□□ -1.99
HOXC9P31274 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC2.64□□□□□ -1.99
HOXC9P31274 AC074117.2-201ENST00000417130 397 ntBASIC2.64□□□□□ -1.99
HOXC9P31274 AC138623.1-201ENST00000418060 216 ntBASIC2.64□□□□□ -1.99
HOXC9P31274 MTCO3P46-201ENST00000425787 232 ntBASIC2.64□□□□□ -1.99
HOXC9P31274 RPS15AP10-201ENST00000432472 382 ntBASIC2.64□□□□□ -1.99
HOXC9P31274 FABP5P14-201ENST00000437273 393 ntBASIC2.64□□□□□ -1.99
HOXC9P31274 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 104 ms