Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.37□□□□□ -2.03
BDNFP23560 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.37□□□□□ -2.03
BDNFP23560 SNORA51.11-201ENST00000384442 131 ntBASIC2.36□□□□□ -2.03
BDNFP23560 RNU4-55P-201ENST00000410731 137 ntBASIC2.36□□□□□ -2.03
BDNFP23560 AP000275.1-201ENST00000411943 390 ntBASIC2.36□□□□□ -2.03
BDNFP23560 MTCO2P19-201ENST00000427513 598 ntBASIC2.36□□□□□ -2.03
BDNFP23560 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
BDNFP23560 MTND1P26-201ENST00000440488 538 ntBASIC2.36□□□□□ -2.03
BDNFP23560 MTCO1P19-201ENST00000443487 500 ntBASIC2.36□□□□□ -2.03
BDNFP23560 FTH1P25-201ENST00000447665 469 ntBASIC2.36□□□□□ -2.03
BDNFP23560 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC2.36□□□□□ -2.03
BDNFP23560 SNORA44.1-201ENST00000517031 108 ntBASIC2.36□□□□□ -2.03
BDNFP23560 SNRPGP18-201ENST00000553000 214 ntBASIC2.36□□□□□ -2.03
BDNFP23560 AC090115.3-201ENST00000553218 849 ntBASIC2.36□□□□□ -2.03
BDNFP23560 AC026464.5-201ENST00000562497 722 ntBASIC2.36□□□□□ -2.03
BDNFP23560 AC006362.1-201ENST00000567392 174 ntBASIC2.36□□□□□ -2.03
BDNFP23560 AL391646.1-201ENST00000603860 190 ntBASIC2.36□□□□□ -2.03
BDNFP23560 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.36□□□□□ -2.03
BDNFP23560 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC2.36□□□□□ -2.03
BDNFP23560 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.36□□□□□ -2.03
BDNFP23560 AL160394.1-201ENST00000624765 724 ntBASIC2.36□□□□□ -2.03
BDNFP23560 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
BDNFP23560 AL354685.2-201ENST00000448218 1447 ntBASIC2.35□□□□□ -2.03
BDNFP23560 SNORD116-9-201ENST00000384000 95 ntBASIC2.35□□□□□ -2.03
BDNFP23560 SNORD116-3-201ENST00000384287 95 ntBASIC2.35□□□□□ -2.03
BDNFP23560 SNORD116-7-201ENST00000384404 95 ntBASIC2.35□□□□□ -2.03
BDNFP23560 SNORD116-5-201ENST00000384462 95 ntBASIC2.35□□□□□ -2.03
BDNFP23560 RN7SKP192-201ENST00000411291 327 ntBASIC2.35□□□□□ -2.03
BDNFP23560 ARL5AP1-201ENST00000418991 388 ntBASIC2.35□□□□□ -2.03
BDNFP23560 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC2.35□□□□□ -2.03
BDNFP23560 AL031659.1-201ENST00000447075 539 ntBASIC2.35□□□□□ -2.03
BDNFP23560 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC2.35□□□□□ -2.03
BDNFP23560 RNU6-261P-201ENST00000459506 102 ntBASIC2.35□□□□□ -2.03
BDNFP23560 RNU6-1037P-201ENST00000459571 107 ntBASIC2.35□□□□□ -2.03
BDNFP23560 MTCO3P38-201ENST00000468910 766 ntBASIC2.35□□□□□ -2.03
BDNFP23560 RPS29P21-201ENST00000496272 170 ntBASIC2.35□□□□□ -2.03
BDNFP23560 AC008628.2-201ENST00000502605 298 ntBASIC2.35□□□□□ -2.03
BDNFP23560 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC2.35□□□□□ -2.03
BDNFP23560 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC2.35□□□□□ -2.03
BDNFP23560 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC2.35□□□□□ -2.03
BDNFP23560 AC109446.1-201ENST00000566172 220 ntBASIC2.35□□□□□ -2.03
BDNFP23560 CYP4A27P-201ENST00000567218 190 ntBASIC2.35□□□□□ -2.03
BDNFP23560 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC2.35□□□□□ -2.03
BDNFP23560 RN7SKP299-201ENST00000606679 301 ntBASIC2.35□□□□□ -2.03
BDNFP23560 AC097520.1-201ENST00000624435 385 ntBASIC2.35□□□□□ -2.03
BDNFP23560 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
BDNFP23560 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.34□□□□□ -2.03
BDNFP23560 RNU6-438P-201ENST00000365561 103 ntBASIC2.34□□□□□ -2.03
BDNFP23560 Y_RNA.504-201ENST00000384481 104 ntBASIC2.34□□□□□ -2.03
BDNFP23560 RNA5SP219-201ENST00000390940 113 ntBASIC2.34□□□□□ -2.03
BDNFP23560 MIR1261-201ENST00000408659 82 ntBASIC2.34□□□□□ -2.03
BDNFP23560 ATP6V0E1P3-201ENST00000420036 246 ntBASIC2.34□□□□□ -2.03
BDNFP23560 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC2.34□□□□□ -2.03
BDNFP23560 AC096638.1-201ENST00000444678 216 ntBASIC2.34□□□□□ -2.03
BDNFP23560 RPL9P6-201ENST00000492764 598 ntBASIC2.34□□□□□ -2.03
BDNFP23560 AC114801.2-201ENST00000503825 781 ntBASIC2.34□□□□□ -2.03
BDNFP23560 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC2.34□□□□□ -2.03
BDNFP23560 SNORA14.1-201ENST00000516113 141 ntBASIC2.34□□□□□ -2.03
BDNFP23560 RNU6-189P-201ENST00000516120 101 ntBASIC2.34□□□□□ -2.03
BDNFP23560 AC087854.1-201ENST00000519706 414 ntBASIC2.34□□□□□ -2.03
BDNFP23560 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.34□□□□□ -2.03
BDNFP23560 HMSD-204ENST00000526932 162 ntTSL 3 BASIC2.34□□□□□ -2.03
BDNFP23560 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.34□□□□□ -2.03
BDNFP23560 AC016256.1-201ENST00000547971 354 ntBASIC2.34□□□□□ -2.03
BDNFP23560 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC2.34□□□□□ -2.03
BDNFP23560 MIR4648-201ENST00000580107 72 ntBASIC2.34□□□□□ -2.03
BDNFP23560 HULC.1-201ENST00000612720 240 ntBASIC2.34□□□□□ -2.03
BDNFP23560 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC2.34□□□□□ -2.03
BDNFP23560 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.34□□□□□ -2.03
BDNFP23560 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.34□□□□□ -2.04
BDNFP23560 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC2.33□□□□□ -2.04
BDNFP23560 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2.33□□□□□ -2.04
BDNFP23560 RNU6-1322P-201ENST00000364309 107 ntBASIC2.33□□□□□ -2.04
BDNFP23560 MIR597-201ENST00000384968 97 ntBASIC2.33□□□□□ -2.04
BDNFP23560 RNU6-1158P-201ENST00000391167 107 ntBASIC2.33□□□□□ -2.04
BDNFP23560 MTCO3P41-201ENST00000414801 328 ntBASIC2.33□□□□□ -2.04
BDNFP23560 USP9YP27-201ENST00000418455 438 ntBASIC2.33□□□□□ -2.04
BDNFP23560 EIF1AXP1-201ENST00000419267 435 ntBASIC2.33□□□□□ -2.04
BDNFP23560 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC2.33□□□□□ -2.04
BDNFP23560 RNU1-131P-201ENST00000458943 161 ntBASIC2.33□□□□□ -2.04
BDNFP23560 AC091885.1-201ENST00000506658 268 ntBASIC2.33□□□□□ -2.04
BDNFP23560 AC079140.3-201ENST00000511111 550 ntBASIC2.33□□□□□ -2.04
BDNFP23560 AC091133.4-201ENST00000511142 308 ntBASIC2.33□□□□□ -2.04
BDNFP23560 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.33□□□□□ -2.04
BDNFP23560 SNORA31.16-201ENST00000516773 139 ntBASIC2.33□□□□□ -2.04
BDNFP23560 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC2.33□□□□□ -2.04
BDNFP23560 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC2.33□□□□□ -2.04
BDNFP23560 AC064807.4-201ENST00000607201 407 ntBASIC2.33□□□□□ -2.04
BDNFP23560 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
BDNFP23560 RN7SKP32-201ENST00000410167 303 ntBASIC2.32□□□□□ -2.04
BDNFP23560 RNA5SP201-201ENST00000410316 124 ntBASIC2.32□□□□□ -2.04
BDNFP23560 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC2.32□□□□□ -2.04
BDNFP23560 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.32□□□□□ -2.04
BDNFP23560 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC2.32□□□□□ -2.04
BDNFP23560 AL513124.1-201ENST00000450410 614 ntBASIC2.32□□□□□ -2.04
BDNFP23560 HMGN2P18-201ENST00000450680 270 ntBASIC2.32□□□□□ -2.04
BDNFP23560 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC2.32□□□□□ -2.04
BDNFP23560 U8.21-201ENST00000459536 136 ntBASIC2.32□□□□□ -2.04
BDNFP23560 AC104564.1-201ENST00000493028 407 ntBASIC2.32□□□□□ -2.04
BDNFP23560 KRTAP13-6P-201ENST00000508999 371 ntBASIC2.32□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 213.7 ms